.ci/bb/breeze-mpim/test.all.clang

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_clang1201
+
+# Check the formatting. Note that git-clang-format might keep redundant blank
+# lines. Therefore, we use clang-format:
+find src app \
+  -name '*.h' -o -name '*.hpp' -o -name '*.c' -o -name '*.cpp' | \
+    xargs -n 1 -P 8 clang-format --Werror --dry-run --verbose
+
+enable_maintainer_mode='no'
+if test ! -f "${top_srcdir}/configure"; then
+  "${top_srcdir}/autogen.sh"
+  # If there is no configure script, there are, most probably, no Fortran
+  # interface files, which are generated in the maintainer mode only:
+  enable_maintainer_mode='yes'
+fi
+
+"${top_srcdir}/configure" \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-maintainer-mode="${enable_maintainer_mode}" \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes="${ECCODES_ROOT}" \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${MPICC}" \
+CPPFLAGS="-I${UUID_ROOT}/include" \
+FC="${MPIFC}" \
+F77="${MPIFC}" \
+LDFLAGS="-I${UUID_ROOT}/lib" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log

.ci/bb/breeze-mpim/test.all.nag

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_nag626223
+
+test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
+
+# Create a distribution file with minimalistic configuration:
+"${top_srcdir}/configure" --enable-maintainer-mode
+make -j8 dist
+
+# Create a subdirectory for further testing and switch to it:
+mkdir check_dist && cd check_dist
+
+# Move the distribution file to the test directory and unpack it:
+mv ../cdi-*.tar.gz ./
+tar xf cdi-*.tar.gz
+
+# Create a subdirectory for building and switch to it:
+mkdir build && cd build
+
+# Use GCC from the path when compiling/linking Fortran code:
+FCFLAGS="-O2 -g -Wc=$(which gcc)"
+
+# Create an out-of-source configuration:
+../cdi-*/configure \
+--disable-maintainer-mode \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes="${ECCODES_ROOT}" \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${MPICC}" \
+CPPFLAGS="-I${UUID_ROOT}/include" \
+F77="${MPIFC}" \
+FC="${MPIFC}" \
+FCFLAGS="${FCFLAGS}" \
+FFLAGS="${FCFLAGS}" \
+LDFLAGS="-I${UUID_ROOT}/lib" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log
+
+make -j8 distclean
+
+check_no_files_in_cwd

.ci/bb/breeze-mpim/test.all.nv

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_nv2130
+
+enable_maintainer_mode='no'
+if test ! -f "${top_srcdir}/configure"; then
+  # If there is no configure script, there are, most probably, no Fortran
+  # interface files, which are generated in the maintainer mode only:
+  enable_maintainer_mode='yes'
+fi
+
+# We want to check with the Debian version of Libtool, which is patched to avoid
+# overlinking:
+( export PATH="/usr/bin:${PATH-}"
+  export ACLOCAL_PATH="/usr/share/aclocal:${ACLOCAL_PATH-}"
+  module unload automake/1.16.1
+  module load automake/1.16.1
+  "${top_srcdir}/autogen.sh" )
+
+"${top_srcdir}/configure" \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-maintainer-mode="${enable_maintainer_mode}" \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes="${ECCODES_ROOT}" \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${MPICC}" \
+CPPFLAGS="-I${UUID_ROOT}/include" \
+F77="${MPIFC}" \
+FC="${MPIFC}" \
+FCFLAGS='-g -fPIC' \
+LDFLAGS="-I${UUID_ROOT}/lib" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log
+
+# Check that an executable is not overlinked to libscalesppmcore.so:
+tested_file='./examples/pio/.libs/collectData'
+invalid_needed=`readelf -d "${tested_file}" | sed -E -n '/\(NEEDED\).*libscalesppmcore\.so/p'` || {
+  echo "ERROR: failed to check '${tested_file}' for ELF NEEDED entries" >&2
+  exit 1
+}
+if test -n "${invalid_needed}"; then
+  {
+    echo "ERROR: '${tested_file}' has excessive ELF NEEDED entries:" >&2
+    echo "${invalid_needed}" >&2
+  } >&2
+  exit 1
+fi

.ci/bb/breeze-mpim/test.ru-py.gcc

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_gcc630
+
+test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
+
+"${top_srcdir}/configure" \
+--disable-maintainer-mode \
+--enable-option-checking=fatal \
+--enable-python \
+--enable-ruby \
+--enable-swig \
+--with-eccodes="${ECCODES_ROOT}" \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${CC}" \
+CPPFLAGS="-I${UUID_ROOT}/include" \
+CXX="${CXX}" \
+LDFLAGS="-L${UUID_ROOT}/lib"
+
+make -j8
+
+# Test the interfaces:
+LD_LIBRARY_PATH="${NETCDF_ROOT}/lib:${LD_LIBRARY_PATH}" make -j8 -C interfaces test
+(cd interfaces && ./CdiInfo)
+
+make -j8 check

.ci/bb/breeze-mpim/utils.sh

+#
+# Accepts a list of environment modules and loads them witch conflict
+# resolution.
+#
+switch_for_module ()
+{
+  for sfm_module in "$@"; do
+    sfm_module_full=
+    sfm_module_short=
+    case $sfm_module in
+      */*)
+        # The module is provided with the version part:
+        sfm_module_full=$sfm_module
+        sfm_module_short=`echo $sfm_module | sed 's%/[^/]*$%%'` ;;
+      *)
+        # Only the name of the module is provided, get the default version:
+        sfm_module_full=`module show $sfm_module 2>&1 | sed -n "s%^[^ \t]*/\\($sfm_module.*\\):%\\1%p"`
+        sfm_module_short=$sfm_module ;;
+    esac
+
+    # A space-separated list of modules that are already loaded:
+    sfm_loaded_full=`module -t list 2>&1 | tr '\n' ' ' | sed 's/^.*Modulefiles://' | sed 's/(default)//g'`
+
+    # Check whether the requested module if already loaded:
+    if test -n "$sfm_module_full"; then
+      case " $sfm_loaded_full " in
+        *" $sfm_module_full "*)
+          echo "module $sfm_module is already loaded"
+          continue ;;
+      esac
+    fi
+
+    # A list of modules in conflict:
+    sfm_conflicts=`module show $sfm_module 2>&1 | sed -n 's/^conflict\(.*\)/\1/p' | tr '\n\t' '  '`
+
+    # A list of loaded modules without version parts:
+    sfm_loaded_short=`echo "$sfm_loaded_full" | sed 's%\([^ ][^ ]*\)/[^ ]*%\1%g'`
+
+    # Add the short name of the module to the list of conflicts:
+    sfm_conflicts="$sfm_conflicts $sfm_module_short"
+
+    # A list of loaded modules that are in conflict with the requested module:
+    sfm_loaded_conflicts=
+    for sfm_conflict in $sfm_conflicts""; do
+      sfm_loaded_list=      
+      case $sfm_conflict in
+        */*)
+          # The conflict is specified with the version part:
+          sfm_loaded_list=$sfm_loaded_full ;;
+        *)
+          # The conflict is specified without the version part:
+          sfm_loaded_list=$sfm_loaded_short ;;
+      esac
+
+      # Check that the conflicted module is loaded:
+      case " $sfm_loaded_list " in
+        *" $sfm_conflict "*)
+          # The conflict is loaded, check whether it is already added to the
+          # list:
+          case " $sfm_loaded_conflicts " in
+            *" $sfm_conflict "*) ;;
+            *)
+              # The conflict is not in the list, append:
+              sfm_loaded_conflicts="$sfm_loaded_conflicts $sfm_conflict" ;;
+          esac
+        ;;
+      esac
+    done
+
+    # Calculate the number of modules that must be unloaded to before loading
+    # the requested module:
+    sfm_loaded_conflicts_count=`echo $sfm_loaded_conflicts | wc -w`
+
+    case $sfm_loaded_conflicts_count in
+      0)
+        # None of the conflicting modules is loaded:
+        sfm_cmd="module load $sfm_module" ;;
+      1)
+        # There is only one module that must be unloaded, use switch command:
+        sfm_cmd="module switch $sfm_loaded_conflicts $sfm_module" ;;
+      *)
+        # There is more than one module that must be unloaded, unload all of
+        # them and then load the requested one:
+        sfm_cmd="module unload $sfm_loaded_conflicts && module load $sfm_module" ;;
+    esac
+
+    echo "$sfm_cmd"
+    eval "$sfm_cmd"
+  done
+}
+
+#
+# Initializes the environment.
+#
+init_env ()
+{
+  saved_set=$-
+  set +eu
+  . /etc/profile.d/mpim.sh
+  set -${saved_set}
+  switch_for_module automake/1.16.1
+
+  # Use non-Debian libtool by default:
+  LIBTOOL_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/libtool-2.4.6-qdyaqqw'
+  export PATH="${LIBTOOL_ROOT}/bin:${PATH-}"
+  export ACLOCAL_PATH="${LIBTOOL_ROOT}/share/aclocal:${ACLOCAL_PATH-}"
+
+  SWIG_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/swig-4.0.2-busrrtn'
+  RUBY_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/ruby-3.0.2-stqm2vj'
+  PYTHON_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/python-2.7.18-zqrnwom'
+
+  export PATH="${RUBY_ROOT}/bin:${PYTHON_ROOT}/bin:${SWIG_ROOT}/bin:${PATH-}"
+}
+
+#
+# Sets variables for tests with GCC 6.3.0.
+#
+init_gcc630 ()
+{
+  init_env
+  switch_for_module gcc/6.3.0
+
+  CC=gcc
+  CXX=g++
+  FC=gfortran
+
+  ECCODES_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/eccodes-2.21.0-3sdngaq'
+  NETCDF_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/netcdf-c-4.8.0-fzupaca'
+  UUID_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/libuuid-1.0.3-rm4kv2o'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  HDF5_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/hdf5-1.10.7-4l3frcp'
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Sets variables for tests with NVHPC 21.3.0.
+#
+init_nv2130 ()
+{
+  init_env
+  switch_for_module gcc/6.3.0
+
+  export NVHPC='/data/mpi/sclab/sip/m300488/nvhpc'
+  export NVLOCALRC="${NVHPC}/Linux_x86_64/21.3/compilers/bin/localrc.60300"
+  export PATH="${NVHPC}/Linux_x86_64/21.3/compilers/bin:${PATH-}"
+
+  CC=nvc
+  CXX=nvc++
+  FC=nvfortran
+
+  export PATH="/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nvhpc-21.3-sandybridge/mpich-3.4.2-sfxulsj/bin:${PATH-}"
+  MPICC=mpicc
+  MPIFC=mpif90
+  MPI_LAUNCH="$(which mpirun)"
+
+  ECCODES_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/eccodes-2.21.0-3sdngaq'
+  NETCDF_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nvhpc-21.3-sandybridge/netcdf-c-4.8.0-vjppuov'
+  PPM_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nvhpc-21.3-sandybridge/scales-ppm-1.0.7-uy4z72r'
+  YAXT_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nvhpc-21.3-sandybridge/yaxt-0.9.2.1-lbqqemx'
+  UUID_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/libuuid-1.0.3-rm4kv2o'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  HDF5_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nvhpc-21.3-sandybridge/hdf5-1.10.7-h7pvthl'
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Sets variables for tests with Clang 12.0.1.
+#
+init_clang1201 ()
+{
+  init_env
+  switch_for_module gcc/6.3.0
+
+  export PATH="/data/mpi/sclab/sip/m300488/clang/12.0.1/bin:${PATH-}"
+  # Clang does not inject RPATHs to the standard library in use:
+  export LD_LIBRARY_PATH="/sw/stretch-x64/gcc/gcc-6.3.0/lib64:${LD_LIBRARY_PATH-}"
+
+  CC=clang
+  CXX=clang++
+  FC=gfortran
+
+  export PATH="/data/mpi/sclab/sip/m300488/libcdi-ci-sw/clang-12.0.1-sandybridge/openmpi-4.1.1-6ydagyy/bin:${PATH-}"
+  MPICC=mpicc
+  MPIFC=mpif90
+  MPI_LAUNCH="$(which mpirun) --oversubscribe"
+
+  ECCODES_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/eccodes-2.21.0-3sdngaq'
+  NETCDF_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/clang-12.0.1-sandybridge/netcdf-c-4.8.0-z6r5guk'
+  PPM_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/clang-12.0.1-sandybridge/scales-ppm-1.0.7-5mhatgx'
+  YAXT_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/clang-12.0.1-sandybridge/yaxt-0.9.2.1-cj2nf5j'
+  UUID_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/libuuid-1.0.3-rm4kv2o'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  HDF5_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/clang-12.0.1-sandybridge/hdf5-1.10.7-4y54xnh'
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Sets variables for tests with NAG 6.2.6223.
+#
+init_nag626223 ()
+{
+  init_env
+  switch_for_module gcc/6.3.0 nag/6.2
+
+  CC=gcc
+  CXX=g++
+  FC=nagfor
+
+  export PATH="/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nag-6.2-sandybridge/mpich-3.4.2-fzsvtw2/bin:${PATH-}"
+  MPICC=mpicc
+  MPIFC=mpif90
+  MPI_LAUNCH="$(which mpirun)"
+
+  ECCODES_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/eccodes-2.21.0-3sdngaq'
+  NETCDF_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nag-6.2-sandybridge/netcdf-c-4.8.0-ogawg3w'
+  PPM_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nag-6.2-sandybridge/scales-ppm-1.0.7-5kdlwzv'
+  YAXT_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nag-6.2-sandybridge/yaxt-0.9.2.1-rhq2ysn'
+  UUID_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/libuuid-1.0.3-rm4kv2o'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  HDF5_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nag-6.2-sandybridge/hdf5-1.10.7-pltg3k4'
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Accepts a path to a file containing the testsuite summary (either the
+# 'test-suite.log' or the standard output of the 'make check' command) and
+# checks whether all tests were run and passed.
+#
+check_all_tests_passed ()
+{
+  awk '/SKIP: /{
+         print "ERROR: the total number of tests is not equal to the number of passed tests";
+         exit 1;
+       }' $1 >&2
+}
+
+#
+# Checks whether the current working directory or any of its subdirectories
+# contain a file and fails with an error message if that is the case.
+#
+check_no_files_in_cwd ()
+{
+  cnfic_files=`find . -type f 2>/dev/null`
+  if test -n "$cnfic_files"; then
+    {
+      echo "ERROR: the current working directory contains undeleted files:"
+      echo "$cnfic_files"
+    } >&2
+    exit 1
+  fi
+}

.ci/bb/daint-cscs/test.all.cray

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_cray1203
+
+# Save time for the person running this script manually:
+if test "x${PE_NETCDF_MODULE_NAME}" = 'xcray-netcdf'; then
+  case $top_srcdir in
+    "${HOME}/"*)
+      echo "ERROR: parallel NetCDF4 tests are known to fail when CDI is built in the user home directory and linked against NetCDF that does not support MPI parallel invocations" >&2
+      exit 1
+  esac
+fi
+
+enable_maintainer_mode='no'
+if test ! -f "${top_srcdir}/configure"; then
+  "${top_srcdir}/autogen.sh"
+  # If there is no configure script, there are, most probably, no Fortran
+  # interface files, which are generated in the maintainer mode only:
+  enable_maintainer_mode='yes'
+fi
+
+# The configure script does not check the 'lib64' subdirectory, therefore we
+# run it with '--with-eccodes' and the following flags. Note that fixing this
+# in the configure script might be tricky: the 'lib64' subdirectory should be
+# checked first but if it does not exist or does not contain the library, we
+# might end up linking to a library from the linker's default search path
+# (e.g. /usr/lib) instead of the one from "$with_eccodes/lib" because
+# "-L${with_eccodes}/lib64" would be ignored in that case:
+CPPFLAGS="-I${ECCODES_ROOT}/include"
+LDFLAGS="-L${ECCODES_ROOT}/lib64"
+
+"${top_srcdir}/configure" \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-maintainer-mode="${enable_maintainer_mode}" \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes \
+--with-netcdf \
+CC="${CC}" \
+CPPFLAGS="${CPPFLAGS}" \
+F77="${FC}" \
+FC="${FC}" \
+LDFLAGS="${LDFLAGS}" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig:${PKG_CONFIG_PATH}"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log

.ci/bb/daint-cscs/test.all.pgi

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_pgi2011
+
+# Save time for the person running this script manually:
+if test "x${PE_NETCDF_MODULE_NAME}" = 'xcray-netcdf'; then
+  case $top_srcdir in
+    "${HOME}/"*)
+      echo "ERROR: parallel NetCDF4 tests are known to fail when CDI is built in the user home directory and linked against NetCDF that does not support MPI parallel invocations" >&2
+      exit 1
+  esac
+fi
+
+enable_maintainer_mode='no'
+if test ! -f "${top_srcdir}/configure"; then
+  "${top_srcdir}/autogen.sh"
+  # If there is no configure script, there are, most probably, no Fortran
+  # interface files, which are generated in the maintainer mode only:
+  enable_maintainer_mode='yes'
+fi
+
+# The configure script does not check the 'lib64' subdirectory, therefore we
+# run it with '--with-eccodes' and the following flags. Note that fixing this
+# in the configure script might be tricky: the 'lib64' subdirectory should be
+# checked first but if it does not exist or does not contain the library, we
+# might end up linking to a library from the linker's default search path
+# (e.g. /usr/lib) instead of the one from "$with_eccodes/lib" because
+# "-L${with_eccodes}/lib64" would be ignored in that case:
+CPPFLAGS="-I${ECCODES_ROOT}/include"
+LDFLAGS="-L${ECCODES_ROOT}/lib64"
+
+"${top_srcdir}/configure" \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-maintainer-mode="${enable_maintainer_mode}" \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes \
+--with-netcdf \
+CC="${CC}" \
+CFLAGS='-g -O1' \
+CPPFLAGS="${CPPFLAGS}" \
+F77="${FC}" \
+FC="${FC}" \
+FCFLAGS='-g -fPIC' \
+LDFLAGS="${LDFLAGS}" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig:${PKG_CONFIG_PATH}" \
+PTHREAD_LIBS='-lpthread'
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log

.ci/bb/daint-cscs/utils.sh

+#
+# Accepts a list of environment modules and loads them witch conflict
+# resolution.
+#
+switch_for_module ()
+{
+  for sfm_module in "$@"; do
+    sfm_module_full=
+    sfm_module_short=
+    case $sfm_module in
+      */*)
+        # The module is provided with the version part:
+        sfm_module_full=$sfm_module
+        sfm_module_short=`echo $sfm_module | sed 's%/[^/]*$%%'` ;;
+      *)
+        # Only the name of the module is provided, get the default version:
+        sfm_module_full=`module show $sfm_module 2>&1 | sed -n "s%^[^ \t]*/\\($sfm_module.*\\):%\\1%p"`
+        sfm_module_short=$sfm_module ;;
+    esac
+
+    # A space-separated list of modules that are already loaded:
+    sfm_loaded_full=`module -t list 2>&1 | tr '\n' ' ' | sed 's/^.*Modulefiles://' | sed 's/(default)//g'`
+
+    # Check whether the requested module if already loaded:
+    if test -n "$sfm_module_full"; then
+      case " $sfm_loaded_full " in
+        *" $sfm_module_full "*)
+          echo "module $sfm_module is already loaded"
+          continue ;;
+      esac
+    fi
+
+    # A list of modules in conflict:
+    sfm_conflicts=`module show $sfm_module 2>&1 | sed -n 's/^conflict\(.*\)/\1/p' | tr '\n\t' '  '`
+
+    # A list of loaded modules without version parts:
+    sfm_loaded_short=`echo "$sfm_loaded_full" | sed 's%\([^ ][^ ]*\)/[^ ]*%\1%g'`
+
+    # Add the short name of the module to the list of conflicts:
+    sfm_conflicts="$sfm_conflicts $sfm_module_short"
+
+    # A list of loaded modules that are in conflict with the requested module:
+    sfm_loaded_conflicts=
+    for sfm_conflict in $sfm_conflicts""; do
+      sfm_loaded_list=      
+      case $sfm_conflict in
+        */*)
+          # The conflict is specified with the version part:
+          sfm_loaded_list=$sfm_loaded_full ;;
+        *)
+          # The conflict is specified without the version part:
+          sfm_loaded_list=$sfm_loaded_short ;;
+      esac
+
+      # Check that the conflicted module is loaded:
+      case " $sfm_loaded_list " in
+        *" $sfm_conflict "*)
+          # The conflict is loaded, check whether it is already added to the
+          # list:
+          case " $sfm_loaded_conflicts " in
+            *" $sfm_conflict "*) ;;
+            *)
+              # The conflict is not in the list, append:
+              sfm_loaded_conflicts="$sfm_loaded_conflicts $sfm_conflict" ;;
+          esac
+        ;;
+      esac
+    done
+
+    # Calculate the number of modules that must be unloaded to before loading
+    # the requested module:
+    sfm_loaded_conflicts_count=`echo $sfm_loaded_conflicts | wc -w`
+
+    case $sfm_loaded_conflicts_count in
+      0)
+        # None of the conflicting modules is loaded:
+        sfm_cmd="module load $sfm_module" ;;
+      1)
+        # There is only one module that must be unloaded, use switch command:
+        sfm_cmd="module switch $sfm_loaded_conflicts $sfm_module" ;;
+      *)
+        # There is more than one module that must be unloaded, unload all of
+        # them and then load the requested one:
+        sfm_cmd="module unload $sfm_loaded_conflicts && module load $sfm_module" ;;
+    esac
+
+    echo "$sfm_cmd"
+    eval "$sfm_cmd"
+  done
+}
+
+#
+# Initializes the environment.
+#
+init_env ()
+{
+  AUTOMAKE_ROOT='/project/d56/libcdi-ci-sw/gcc-11.2.0-haswell/automake-1.16.3-46gthis'
+  export PATH="${AUTOMAKE_ROOT}/bin:${PATH-}"
+  # Tell the custom installation of Automake where the libtool macros are:
+  export ACLOCAL_PATH="/usr/share/aclocal:${ACLOCAL_PATH-}"
+}
+
+#
+# Sets variables for tests with Cray 12.0.3.
+#
+init_cray1203 ()
+{
+  init_env
+  switch_for_module craype PrgEnv-cray cce/12.0.3 cray-mpich
+
+  # Build and test against NetCDF that does not support MPI parallel invocations
+  # (parallel NetCDF4 tests are known to fail in this case when run from the
+  # user home directory on Daint):
+  switch_for_module cray-netcdf
+
+  # Uncomment the following line to test against MPI-capable NetCDF:
+  # switch_for_module cray-netcdf-hdf5parallel cray-hdf5-parallel
+
+  CC=cc
+  CXX=CC
+  FC=ftn
+  MPI_LAUNCH="$(which srun) -p cscsci -C gpu -A d56 -t 05:00"
+
+  ECCODES_ROOT='/project/d56/libcdi-ci-sw/cce-12.0.3-haswell/eccodes-2.24.2-o2a4fw3'
+  PPM_ROOT='/project/d56/libcdi-ci-sw/cce-12.0.3-haswell/scales-ppm-1.0.8-44zlrlu'
+  YAXT_ROOT='/project/d56/libcdi-ci-sw/cce-12.0.3-haswell/yaxt-0.9.2.1-enz3pcz'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib64:${PPM_ROOT}/lib:${YAXT_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Sets variables for tests with PGI 20.1.1.
+#
+init_pgi2011 ()
+{
+  init_env
+  # We use deprecated versions (the most recent compatible with PGI though) of
+  # the Cray packages and have to make sure that the default versions are
+  # unloaded (otherwise, we get various warnings and errors):
+  module unload cray-mpich cray-netcdf cray-netcdf-hdf5parallel cray-hdf5 cray-hdf5-parallel
+  switch_for_module craype PrgEnv-pgi/6.0.8 pgi/20.1.1 cray-mpich/7.7.15
+
+  # Build and test against NetCDF that does not support MPI parallel invocations
+  # (parallel NetCDF4 tests are known to fail in this case when run from the
+  # user home directory on Daint):
+  switch_for_module cray-netcdf/4.7.4.0 cray-hdf5/1.12.0.0
+
+  # Uncomment the following line to test against MPI-capable NetCDF:
+  # switch_for_module cray-netcdf-hdf5parallel/4.7.4.0 cray-hdf5-parallel/1.12.0.0
+
+  CC=cc
+  CXX=CC
+  FC=ftn
+  MPI_LAUNCH="$(which srun) -p cscsci -C gpu -A d56 -t 05:00"
+
+  ECCODES_ROOT='/project/d56/libcdi-ci-sw/pgi-20.1.1-haswell/eccodes-2.24.2-hwtl5nr'
+  PPM_ROOT='/project/d56/libcdi-ci-sw/pgi-20.1.1-haswell/scales-ppm-1.0.8-z2nxqya'
+  YAXT_ROOT='/project/d56/libcdi-ci-sw/pgi-20.1.1-haswell/yaxt-0.9.2.1-3orop7g'
+
+  # The deprecated versions of the Cray packages are not in the default linker
+  # search path:
+  export LD_LIBRARY_PATH="${MPICH_DIR}/lib:${NETCDF_DIR}/lib:${HDF5_DIR}/lib:${LD_LIBRARY_PATH-}"
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib64:${PPM_ROOT}/lib:${YAXT_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Accepts a path to a file containing the testsuite summary (either the
+# 'test-suite.log' or the standard output of the 'make check' command) and
+# checks whether all tests were run and passed.
+#
+check_all_tests_passed ()
+{
+  awk '/SKIP: /{
+         print "ERROR: the total number of tests is not equal to the number of passed tests";
+         exit 1;
+       }' $1 >&2
+}

.ci/bb/levante-dkrz/install_prerequisites.sh

+#!/bin/bash
+
+set -eu
+unset CDPATH
+
+module purge
+module load git
+
+install_dir='/work/mh0287/m300488/libcdi-ci-sw/install'
+work_dir="$(pwd)/build"
+make_cmd='make -j22'
+
+mkdir -p "${work_dir}" && cd "${work_dir}"
+
+# Get PPM 1.0.8:
+wget https://swprojects.dkrz.de/redmine/attachments/download/517/ppm-1.0.8.tar.gz
+tar xvf ppm-1.0.8.tar.gz
+ppm_src_dir="${work_dir}/ppm-1.0.8"
+ppm_name_tag='ppm-1.0.8'
+ppm_config_args='--enable-MPI --disable-netcdf --disable-hdf5 --disable-parmetis --disable-metis --disable-crypto'
+
+# Get YAXT 0.9.3:
+git clone --depth=1 -b release-0.9.3 https://gitlab.dkrz.de/dkrz-sw/yaxt.git
+yaxt_src_dir="${work_dir}/yaxt"
+yaxt_name_tag='yaxt-0.9.3'
+yaxt_config_args=''
+
+export CC='mpicc'
+export FC='mpif90'
+
+# Install for GCC 11.2.0:
+compiler_name_tag='gcc-11.2.0'
+module load openmpi/4.1.2-gcc-11.2.0
+
+# Install PPM:
+build_dir="${ppm_name_tag}-${compiler_name_tag}"
+mkdir "${build_dir}"
+( cd "${build_dir}"
+  "${ppm_src_dir}/configure" ${ppm_config_args} --prefix="${install_dir}/${ppm_name_tag}-${compiler_name_tag}"
+  $make_cmd
+  $make_cmd check
+  $make_cmd install )
+
+# Install YAXT:
+build_dir="${yaxt_name_tag}-${compiler_name_tag}"
+mkdir "${build_dir}"
+( cd "${build_dir}"
+  "${yaxt_src_dir}/configure" ${yaxt_config_args} --prefix="${install_dir}/${yaxt_name_tag}-${compiler_name_tag}"
+  $make_cmd
+  $make_cmd check
+  $make_cmd install )
+
+module unload openmpi/4.1.2-gcc-11.2.0
+
+# Install for Intel Classic 2021.5.0:
+compiler_name_tag='intel-classic-2021.5.0'
+module load openmpi/4.1.2-intel-2021.5.0
+
+# Install PPM:
+build_dir="${ppm_name_tag}-${compiler_name_tag}"
+mkdir "${build_dir}"
+( cd "${build_dir}"
+  "${ppm_src_dir}/configure" ${ppm_config_args} --prefix="${install_dir}/${ppm_name_tag}-${compiler_name_tag}"
+  $make_cmd
+  $make_cmd check
+  $make_cmd install )
+
+# Install YAXT:
+build_dir="${yaxt_name_tag}-${compiler_name_tag}"
+mkdir "${build_dir}"
+( cd "${build_dir}"
+  "${yaxt_src_dir}/configure" ${yaxt_config_args} --prefix="${install_dir}/${yaxt_name_tag}-${compiler_name_tag}"
+  $make_cmd
+  $make_cmd check
+  $make_cmd install )
+
+module unload openmpi/4.1.2-intel-2021.5.0

.ci/bb/levante-dkrz/test.all.gcc

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_gcc1120
+
+enable_maintainer_mode='no'
+if test ! -f "${top_srcdir}/configure"; then
+  "${top_srcdir}/autogen.sh"
+  # If there is no configure script, there are, most probably, no Fortran
+  # interface files, which are generated in the maintainer mode only:
+  enable_maintainer_mode='yes'
+fi
+
+# The configure script does not check the 'lib64' subdirectory, therefore we
+# run it with '--with-eccodes' and the following flags. Note that fixing this
+# in the configure script might be tricky: the 'lib64' subdirectory should be
+# checked first but if it does not exist or does not contain the library, we
+# might end up linking to a library from the linker's default search path
+# (e.g. /usr/lib) instead of the one from "$with_eccodes/lib" because
+# "-L${with_eccodes}/lib64" would be ignored in that case:
+CPPFLAGS="-I${ECCODES_ROOT}/include"
+LDFLAGS="-L${ECCODES_ROOT}/lib64"
+
+# We expect --enable-cf-interface and --enable-ppm-dist-array to be set to
+# 'yes' automatically because of --enable-mpi. Function
+# 'check_all_tests_passed' that we run at the end makes sure that the options
+# have been enabled and the corresponding tests have not been skipped.
+"${top_srcdir}/configure" \
+--enable-iso-c-interface \
+--enable-maintainer-mode="${enable_maintainer_mode}" \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${MPICC}" \
+CPPFLAGS="${CPPFLAGS}" \
+F77="${MPIFC}" \
+FC="${MPIFC}" \
+LDFLAGS="${LDFLAGS}" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log

.ci/bb/levante-dkrz/test.all.intel-classic

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_intelclassic202150
+
+enable_maintainer_mode='no'
+if test ! -f "${top_srcdir}/configure"; then
+  "${top_srcdir}/autogen.sh"
+  # If there is no configure script, there are, most probably, no Fortran
+  # interface files, which are generated in the maintainer mode only:
+  enable_maintainer_mode='yes'
+fi
+
+# Create a subdirectory for building and switch to it:
+mkdir build && cd build
+
+# The configure script does not check the 'lib64' subdirectory, therefore we
+# run it with '--with-eccodes' and the following flags. Note that fixing this
+# in the configure script might be tricky: the 'lib64' subdirectory should be
+# checked first but if it does not exist or does not contain the library, we
+# might end up linking to a library from the linker's default search path
+# (e.g. /usr/lib) instead of the one from "$with_eccodes/lib" because
+# "-L${with_eccodes}/lib64" would be ignored in that case:
+CPPFLAGS="-I${ECCODES_ROOT}/include"
+LDFLAGS="-L${ECCODES_ROOT}/lib64"
+
+"${top_srcdir}/configure" \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-maintainer-mode="${enable_maintainer_mode}" \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${MPICC}" \
+CPPFLAGS="${CPPFLAGS}" \
+F77="${MPIFC}" \
+FC="${MPIFC}" \
+LDFLAGS="${LDFLAGS}" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log
+
+if test "x${enable_maintainer_mode}" = 'xyes'; then
+  make -j8 maintainer-clean
+else
+  make -j8 distclean
+fi
+
+check_no_files_in_cwd

.ci/bb/levante-dkrz/test.icon-pio.intel-classic

+#!/bin/bash
+
+echo "WARNING: the current version of CDI-PIO is incompatible with the build system if ICON" >&2
+exit 0

.ci/bb/levante-dkrz/test.icon.gcc

+#!/bin/bash
+
+set -eu
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_gcc1120
+
+# The following compiler flags are used by the respective ICON configure
+# wrapper. They are not set into stone and can be changed if needed. It is just
+# important to keep them the same as in the wrapper.
+CFLAGS='-g -gdwarf-4 -march=native -mpc64 -O2'
+FCFLAGS='-fmodule-private -fimplicit-none -fmax-identifier-length=63 -Wall -Wcharacter-truncation -Wconversion -Wunderflow -Wunused-parameter -Wno-surprising -fall-intrinsics -g -march=native -mpc64 -fbacktrace -fbounds-check -fstack-protector-all -finit-real=nan -finit-integer=-2147483648 -finit-character=127 -O2 -std=f2008'
+
+if test ! -f "${top_srcdir}/configure"; then
+  "${top_srcdir}/autogen.sh"
+  # If there is no configure script, there are, most probably, no Fortran
+  # interface files, which are generated in the maintainer mode only. Therefore,
+  # we have to generate them before testing:
+  "${top_srcdir}/configure" --enable-maintainer-mode && make -C src mo_cdi.f90 && make distclean
+fi
+
+"${top_srcdir}/configure" \
+--disable-cdi-app \
+--disable-maintainer-mode \
+--disable-shared \
+--enable-cf-interface=no \
+--enable-cgribex \
+--enable-grib \
+--enable-iso-c-interface \
+--enable-mpi=no \
+--enable-ppm-dist-array=no \
+--enable-silent-rules=no \
+--enable-static \
+--with-eccodes=yes \
+--with-netcdf \
+--with-on-demand-check-programs \
+--without-example-programs \
+--without-grib_api \
+--without-szlib \
+--without-threads \
+BUILD_CC= \
+BUILD_CFLAGS= \
+BUILD_CXX= \
+BUILD_F77= \
+BUILD_FC= \
+BUILD_FCFLAGS= \
+BUILD_LDFLAGS= \
+BUILD_LIBS= \
+BUILD_MPI_C_LIB= \
+BUILD_MPI_FC_LIB= \
+CC="${MPICC}" \
+CFLAGS="${CFLAGS}" \
+CPPFLAGS="-I${NETCDF_ROOT}/include -I${ECCODES_ROOT}/include" \
+CXX=no \
+F77=no \
+FC="${MPIFC}" \
+FCFLAGS="${FCFLAGS}" \
+LDFLAGS="-L${NETCDF_ROOT}/lib -L${ECCODES_ROOT}/lib64" \
+LIBS='-leccodes -lnetcdf' \
+MPIROOT= \
+MPI_C_INCLUDE= \
+MPI_C_LIB= \
+MPI_FC_LIB= \
+MPI_FC_MOD= \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG= \
+PPM_CORE_C_INCLUDE= \
+PPM_CORE_C_LIB= \
+YAXT_C_INCLUDE= \
+YAXT_C_LIB= \
+YAXT_FC_LIB= \
+YAXT_FC_MOD= \
+ac_cv_func_uuid_create=no \
+ac_cv_lib_uuid_uuid_generate=no \
+acx_cv_have_libnc_dap=no \
+acx_cv_have_nc4hdf5=no \
+acx_cv_have_netcdf2=yes \
+acx_cv_have_netcdf4=yes \
+acx_cv_have_pnetcdf=no
+
+make -j8
+
+make -j8 check

.ci/bb/levante-dkrz/utils.sh

+#
+# Accepts a list of environment modules and loads them witch conflict
+# resolution.
+#
+switch_for_module ()
+{
+  for sfm_module in "$@"; do
+    sfm_module_full=
+    sfm_module_short=
+    case $sfm_module in
+      */*)
+        # The module is provided with the version part:
+        sfm_module_full=$sfm_module
+        sfm_module_short=`echo $sfm_module | sed 's%/[^/]*$%%'` ;;
+      *)
+        # Only the name of the module is provided, get the default version:
+        sfm_module_full=`module show $sfm_module 2>&1 | sed -n "s%^[^ \t]*/\\($sfm_module.*\\):%\\1%p"`
+        sfm_module_short=$sfm_module ;;
+    esac
+
+    # A space-separated list of modules that are already loaded:
+    sfm_loaded_full=`module -t list 2>&1 | tr '\n' ' ' | sed 's/^.*Modulefiles://' | sed 's/(default)//g'`
+
+    # Check whether the requested module if already loaded:
+    if test -n "$sfm_module_full"; then
+      case " $sfm_loaded_full " in
+        *" $sfm_module_full "*)
+          echo "module $sfm_module is already loaded"
+          continue ;;
+      esac
+    fi
+
+    # A list of modules in conflict:
+    sfm_conflicts=`module show $sfm_module 2>&1 | sed -n 's/^conflict\(.*\)/\1/p' | tr '\n\t' '  '`
+
+    # A list of loaded modules without version parts:
+    sfm_loaded_short=`echo "$sfm_loaded_full" | sed 's%\([^ ][^ ]*\)/[^ ]*%\1%g'`
+
+    # Add the short name of the module to the list of conflicts:
+    sfm_conflicts="$sfm_conflicts $sfm_module_short"
+
+    # A list of loaded modules that are in conflict with the requested module:
+    sfm_loaded_conflicts=
+    for sfm_conflict in $sfm_conflicts""; do
+      sfm_loaded_list=      
+      case $sfm_conflict in
+        */*)
+          # The conflict is specified with the version part:
+          sfm_loaded_list=$sfm_loaded_full ;;
+        *)
+          # The conflict is specified without the version part:
+          sfm_loaded_list=$sfm_loaded_short ;;
+      esac
+
+      # Check that the conflicted module is loaded:
+      case " $sfm_loaded_list " in
+        *" $sfm_conflict "*)
+          # The conflict is loaded, check whether it is already added to the
+          # list:
+          case " $sfm_loaded_conflicts " in
+            *" $sfm_conflict "*) ;;
+            *)
+              # The conflict is not in the list, append:
+              sfm_loaded_conflicts="$sfm_loaded_conflicts $sfm_conflict" ;;
+          esac
+        ;;
+      esac
+    done
+
+    # Calculate the number of modules that must be unloaded to before loading
+    # the requested module:
+    sfm_loaded_conflicts_count=`echo $sfm_loaded_conflicts | wc -w`
+
+    case $sfm_loaded_conflicts_count in
+      0)
+        # None of the conflicting modules is loaded:
+        sfm_cmd="module load $sfm_module" ;;
+      1)
+        # There is only one module that must be unloaded, use switch command:
+        sfm_cmd="module switch $sfm_loaded_conflicts $sfm_module" ;;
+      *)
+        # There is more than one module that must be unloaded, unload all of
+        # them and then load the requested one:
+        sfm_cmd="module unload $sfm_loaded_conflicts && module load $sfm_module" ;;
+    esac
+
+    echo "$sfm_cmd"
+    eval "$sfm_cmd"
+  done
+}
+
+#
+# Initializes the environment.
+#
+init_env ()
+{
+  switch_for_module ruby/3.0.2-gcc-11.2.0
+}
+
+#
+# Sets variables for tests with GCC 11.2.0.
+#
+init_gcc1120 ()
+{
+  init_env
+  switch_for_module gcc/11.2.0-gcc-11.2.0 openmpi/4.1.2-gcc-11.2.0
+
+  CC=gcc
+  CXX=g++
+  FC=gfortran
+  MPICC=mpicc
+  MPIFC=mpif90
+  MPI_LAUNCH="$(which mpirun)"
+
+  ECCODES_ROOT='/sw/spack-levante/eccodes-2.21.0-4ywkk4'
+  NETCDF_ROOT='/sw/spack-levante/netcdf-c-4.8.1-6qheqr'
+  PPM_ROOT='/work/mh0287/m300488/libcdi-ci-sw/install/ppm-1.0.8-gcc-11.2.0'
+  YAXT_ROOT='/work/mh0287/m300488/libcdi-ci-sw/install/yaxt-0.9.3-gcc-11.2.0'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib64:${NETCDF_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Sets variables for tests with Intel Classic 2021.5.0.
+#
+init_intelclassic202150 ()
+{
+  init_env
+  # Try to make sure that the compiler works with the system gcc:
+  module unload gcc
+  # For whatever reason, Intel Classic 2021.5.0 is enabled with
+  # intel-oneapi-compilers/2022.0.1-gcc-11.2.0:
+  switch_for_module intel-oneapi-compilers/2022.0.1-gcc-11.2.0 openmpi/4.1.2-intel-2021.5.0
+
+  AR=xiar
+  CC=icc
+  CXX=icpc
+  FC=ifort
+  MPICC=mpicc
+  MPIFC=mpif90
+  MPI_LAUNCH="$(which mpirun)"
+
+  ECCODES_ROOT='/sw/spack-levante/eccodes-2.21.0-3ehkbb'
+  NETCDF_ROOT='/sw/spack-levante/netcdf-c-4.8.1-2k3cmu'
+  PPM_ROOT='/work/mh0287/m300488/libcdi-ci-sw/install/ppm-1.0.8-intel-classic-2021.5.0'
+  YAXT_ROOT='/work/mh0287/m300488/libcdi-ci-sw/install/yaxt-0.9.3-intel-classic-2021.5.0'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib64:${NETCDF_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Accepts a path to a file containing the testsuite summary (either the
+# 'test-suite.log' or the standard output of the 'make check' command) and
+# checks whether all tests were run and passed.
+#
+check_all_tests_passed ()
+{
+  awk '/SKIP: /{
+         print "ERROR: the total number of tests is not equal to the number of passed tests";
+         exit 1;
+       }' $1 >&2
+}
+
+#
+# Checks whether the current working directory or any of its subdirectories
+# contain a file and fails with an error message if that is the case.
+#
+check_no_files_in_cwd ()
+{
+  cnfic_files=`find . -type f 2>/dev/null`
+  if test -n "$cnfic_files"; then
+    {
+      echo "ERROR: the current working directory contains undeleted files:"
+      echo "$cnfic_files"
+    } >&2
+    exit 1
+  fi
+}

.ci/bb/run_all.sh

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../.."; pwd)
+
+test_environment='unknown'
+case $(uname -s) in
+  Linux)
+    node_name=$(uname -n)
+    case $(host "${node_name}") in
+      mpipc*.mpimet.mpg.de\ * | \
+      breeze*.mpimet.mpg.de\ *)
+        test_environment='breeze-mpim' ;;
+      levante*.atos.local\ *)
+        test_environment='levante-dkrz' ;;
+      daint*.login.cscs.ch\ *)
+        test_environment='daint-cscs' ;;
+    esac
+esac
+
+test "x${test_environment}" != 'xunknown' || {
+  echo 'ERROR: unknown test environment' >&2
+  exit 1
+}
+
+cd "${top_srcdir}"
+
+git update-index -q --refresh || {
+  echo "ERROR: failed to update git index in '${top_srcdir}'" >&2
+  exit 1
+}
+
+git diff-files --quiet || {
+  echo "ERROR: '${top_srcdir}' has unstaged changes" >&2
+  exit 1
+}
+
+untracked_files=`git ls-files --others` || {
+  echo "ERROR: failed to get list of untracked files in '${top_srcdir}'" >&2
+  exit 1
+}
+if test -n "${untracked_files}"; then
+  {
+    echo "ERROR: '${top_srcdir}' has untracked files:" >&2
+    echo "${untracked_files}" >&2
+  } >&2
+  exit 1
+fi
+
+echo "Running tests for '${test_environment}'"
+
+for script in $(find "${script_dir}/${test_environment}" -type f -name 'test.*' -executable); do
+  echo "Running '${script}'"
+  "${script}"
+  git clean -fdx
+  git checkout .
+done

.gitignore

@@ -25,9 +25,9 @@ Makefile.in
 /config.lt
 /config.status
 /libtool
+/src/cmake/cdi/cdi-config-version.cmake
+/src/cmake/cdi/cdi-config.cmake
 /src/config.h
-/src/cmake/cdi-config-version.cmake
-/src/cmake/cdi-config.cmake
 /src/pkgconfig/cdi.pc
 /src/pkgconfig/cdi_f2003.pc
 /src/pkgconfig/cdipio.pc
@@ -73,6 +73,12 @@ Makefile
 /app/cdi
 /app/createtable
 /build
+/src/cdi.inc
+/src/cdiFortran.c
+/src/cdipio.inc
+/src/cdipioFortran.c
+/src/make_fint
+/src/mo_cdi.f90
 
 # Documentation stage files:
 /doc/cdi_cman.pdf

COPYING

-Copyright 2021, MPI für Meteorologie
+Copyright 2002-2022, MPI für Meteorologie
 
 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
 
@@ -9,3 +9,6 @@ Redistribution and use in source and binary forms, with or without modification,
 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
 
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Copyright notice
+   ©2002-2022 MPI-M, see list in the AUTHORS file

ChangeLog

+2022-12-06  Uwe Schulzweida
+
+	* Version 2.1.1 released
+
+2022-11-29  Uwe Schulzweida
+
+	* cdf_def_mapping: added support for datatype NC_STRING (bug fix)
+
+2022-11-18  Uwe Schulzweida
+
+	* grid module: removed initialization of CDI_KEY_SCANNINGMODE (bug fix)
+
+2022-11-16  Uwe Schulzweida
+
+	* cdf_read_xcoord: skip char coordinates only if ndims=1 (bug fix)
+
+2022-11-13  Uwe Schulzweida
+
+	* Added interface function streamOpenReadQuery();
+	* Added module cdiQuery
+
+2022-11-09  Uwe Schulzweida
+
+	* async_worker: removed syncronization at end of timesteps
+
+2022-11-05  Uwe Schulzweida
+
+	* NetCDF output: added compression support for data on GRID_GENERIC
+
+2022-10-19  Uwe Schulzweida
+
+	* Replaced CDI function vlistDefVarExtra() by cdiDefKeyString() with CDI_KEY_CHUNKS
+	* Replaced CDI function vlistInqVarExtra() by cdiInqKeyString() with CDI_KEY_CHUNKS
+	* Replaced CDI function vlistDefVarScalefactor() by cdiDefKeyFloat() with CDI_KEY_SCALEFACTOR
+	* Replaced CDI function vlistInqVarScalefactor() by cdiDefKeyFloat () with CDI_KEY_SCALEFACTOR
+	* Replaced CDI function vlistDefVarAddoffset() by cdiDefKeyFloat () with CDI_KEY_ADDOFFSET
+	* Replaced CDI function vlistInqVarAddoffset() by cdiDefKeyFloat () with CDI_KEY_ADDOFFSET
+
+2022-10-17  Uwe Schulzweida
+
+        * Added environment variable CDI_SHUFFLE to set shuffle option to NetCDF4 deflation compression
+
+2022-10-16  Uwe Schulzweida
+
+	* Improved read performance of temporal chunked NetCDF4 data
+        * Added environment variable CDI_CHUNK_CACHE to set the NetCDF4 chunk cache size
+        * Added environment variable CDI_CHUNK_CACHE_MAX to set the maximum chunk cache size
+
+2022-10-14  Uwe Schulzweida
+
+	* NetCDF: reading of lower time bounds is wrong since 2.0.6 (bug fix)
+
+2022-10-06  Uwe Schulzweida
+
+	* Version 2.1.0 released
+
+2022-10-05  Uwe Schulzweida
+
+	* Added CDI_PROJ_HEALPIX
+
+2022-10-04  Uwe Schulzweida
+
+	* cdi_encode_timeval: added support for TUNIT_SECOND
+
+2022-09-30  Uwe Schulzweida
+
+	* install cmake files in <install>/lib/cmake/cdi
+
+2022-08-12  Uwe Schulzweida
+
+	* added CDI_KEY_CHUNKTYPE and CDI_KEY_CHUNKSIZE
+
+2022-08-11  Uwe Schulzweida
+
+        * using CGRIBEX library version 2.0.2
+	* Version 2.0.6 released
+
+2022-07-11  Uwe Schulzweida
+
+	* Set number of significant bits used for NetCDF 4.9.0 bit-roundung: vlistDefVarNSB()/vlistInqVarNSB()
+
+2022-06-29  Uwe Schulzweida
+
+	* Added support for NCZarr
+
+2022-05-19  Uwe Schulzweida
+
+	* Added support for milli seconds
+	* Changed DateType back to int
+
+2022-04-01  Uwe Schulzweida
+
+	* cdf_set_grid_to_similar_vars: set ydimid to CDI_UNDEFID for GRID_GAUSSIAN_REDUCED (bug fix)
+
+2022-03-23  Uwe Schulzweida
+
+	* compareXYvals failed for unstructured grids (segmentation fault) [Bug #10632]
+
+2022-03-16  Uwe Schulzweida
+
+        * using CGRIBEX library version 2.0.1
+	* Version 2.0.5 released
+
+2022-03-11  Uwe Schulzweida
+
+	* zaxis_compare: check bounds (bug fix)
+
+2022-03-10  Uwe Schulzweida
+
+	* ecCodes encode: fix problem with startStep for step type MIN/MAX  [report: Johannes Schick]
+	* ecCodes encode: switch off unused bitmap [request: Sebastian Borchert]
+
+2022-03-04  Uwe Schulzweida
+
+	* recalculate optimal chunk_size if gridsize is > chunk_size_lim (bug fix)
+
+2022-02-14  Uwe Schulzweida
+
+	* Version 2.0.4 released
+
 2022-02-02  Uwe Schulzweida
 
 	* gribapiEncode: init productDefinitionTemplate with -1 (bug fix)
 
 2022-01-28  Uwe Schulzweida
 
-	* cdf_read_coordinates: check that bounds have only 2 dimensions [Bug #10575]
+	* cdf_read_coordinates: check that grid cell bounds have only 2 dimensions [Bug #10575]
 	* gribIterator::gridGenerate: copy CDI_KEY_UUID (bug fix)
 
 2022-01-12  Uwe Schulzweida

LICENSE

-Copyright 2003-2021, MPI für Meteorologie
+Copyright 2002-2022, MPI für Meteorologie
 
 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
 
@@ -9,3 +9,6 @@ Redistribution and use in source and binary forms, with or without modification,
 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
 
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Copyright notice
+   ©2002-2022 MPI-M, see list in the AUTHORS file

Makefile.am

@@ -3,6 +3,7 @@
 SUBDIRS = src interfaces app examples examples/pio tests
 #
 EXTRA_DIST=config/default \
+	LICENSE \
 	doc/cdi_cman.pdf \
 	doc/cdi_fman.pdf \
 	src/cfortran.doc \
@@ -15,6 +16,10 @@ ACLOCAL_AMFLAGS = -I m4
 #
 CLEANFILES  = `ls *~`
 #
+
+# The pdf files below cannot be created in parallel:
+doc/cdi_cman.pdf: doc/cdi_fman.pdf
+
 doc/cdi_cman.pdf: 
 	(cd $(top_srcdir)/doc/tex ; ./makepdf_c ; mv cdi_cman.pdf .. ; ./cleanup)
 #