Update .gitignore

.gitignore

 # Autoreconf stage files:
 /autom4te.cache
+/configure~
 /src/config.h.in~
 
 # Distributed autoreconf stage files:
@@ -24,22 +25,20 @@ Makefile.in
 
 # Configure stage files:
 .deps
-/cdi.settings
-/config.log
-/config.lt
-/config.status
-/examples/pio/collectData
-/examples/pio/collectData.parallel
-/interfaces/*.run
-/libtool
-/src/cmake/cdi/*.cmake
-/src/config.h
-/src/pkgconfig/*.pc
-/src/stamp-h1
-/tables/gen_tableheaderfile
-/tests/*.run
-/tests/test_cksum_base
+/**/interfaces/*.run
+/**/src/cmake/cdi/*.cmake
+/**/src/config.h
+/**/src/pkgconfig/*.pc
+/**/src/stamp-h1
+/**/tables/gen_tableheaderfile
+/**/tests/*.run
+/**/tests/test_cksum_base
 Makefile
+cdi.settings
+config.log
+config.lt
+config.status
+libtool
 
 # Build stage files:
 *.L
@@ -48,88 +47,90 @@ Makefile
 *.mod
 *.o
 .dirstamp
-/*/**/.libs
-/app/cdi
-/app/createtable
+/**/.libs
+/**/app/cdi
+/**/app/createtable
+/**/examples/cdi_append
+/**/examples/cdi_copy
+/**/examples/cdi_read
+/**/examples/cdi_read_f2003
+/**/examples/cdi_write
+/**/examples/cdi_write_const
+/**/examples/cdi_write_ens
+/**/examples/cdi_write_f2003
+/**/examples/cdi_write_hybrid
+/**/examples/cdi_write_local
+/**/examples/cdi_write_relativ
+/**/examples/pio/*.parallel.F90
+/**/examples/pio/*.parallel.c
+/**/examples/pio/collectData
+/**/examples/pio/collectData.parallel
+/**/examples/pio/collectData2003
+/**/examples/pio/collectData2003.parallel
+/**/examples/pio/collectDataNStreams
+/**/examples/pio/collectDataNStreams.parallel
+/**/examples/pio/compareResourcesArray
+/**/interfaces/CdiInfo
+/**/interfaces/python/Cdi.py
+/**/interfaces/python/cdi_wrapper.cpp
+/**/interfaces/ruby/cdi_wrapper.cpp
+/**/src/cdi.inc
+/**/src/cdiFortran.c
+/**/src/cdipio.inc
+/**/src/cdipioFortran.c
+/**/src/make_fint
+/**/src/mo_cdi.f90
+/**/tests/*.parallel.c
+/**/tests/calendar_test1
+/**/tests/cksum_read
+/**/tests/cksum_verify
+/**/tests/cksum_write
+/**/tests/cksum_write_chunk
+/**/tests/pio_write
+/**/tests/pio_write.parallel
+/**/tests/pio_write_deco2d
+/**/tests/pio_write_deco2d.parallel
+/**/tests/test_byteswap
+/**/tests/test_cdf_read
+/**/tests/test_cdf_write
+/**/tests/test_grib
+/**/tests/test_month_adjust
+/**/tests/test_resource_copy
+/**/tests/test_resource_copy.parallel
+/**/tests/test_table
 /build
-/examples/cdi_append
-/examples/cdi_copy
-/examples/cdi_read
-/examples/cdi_read_f2003
-/examples/cdi_write
-/examples/cdi_write_const
-/examples/cdi_write_ens
-/examples/cdi_write_f2003
-/examples/cdi_write_hybrid
-/examples/cdi_write_local
-/examples/cdi_write_relativ
-/examples/pio/*.parallel.F90
-/examples/pio/*.parallel.c
-/examples/pio/collectData2003
-/examples/pio/collectData2003.parallel
-/examples/pio/collectDataNStreams
-/examples/pio/collectDataNStreams.parallel
-/examples/pio/compareResourcesArray
-/interfaces/CdiInfo
-/interfaces/python/Cdi.py
-/interfaces/python/cdi_wrapper.cpp
-/interfaces/ruby/cdi_wrapper.cpp
-/src/cdi.inc
-/src/cdiFortran.c
-/src/cdipio.inc
-/src/cdipioFortran.c
-/src/make_fint
-/src/mo_cdi.f90
-/tests/*.parallel.c
-/tests/calendar_test1
-/tests/cksum_read
-/tests/cksum_verify
-/tests/cksum_write
-/tests/cksum_write_chunk
-/tests/pio_write
-/tests/pio_write.parallel
-/tests/pio_write_deco2d
-/tests/pio_write_deco2d.parallel
-/tests/test_byteswap
-/tests/test_cdf_read
-/tests/test_cdf_write
-/tests/test_grib
-/tests/test_month_adjust
-/tests/test_resource_copy
-/tests/test_resource_copy.parallel
-/tests/test_table
 
 # Test stage files:
-/examples/**/*.grb
-/examples/**/*.grb2
-/examples/**/*.nc
-/interfaces/*.log
-/interfaces/*.trs
-/interfaces/python/*.pyc
-/interfaces/python/*.pyo
-/interfaces/python/__pycache__
-/tests/*.cksum
-/tests/*.ext
-/tests/*.grb
-/tests/*.grb2
-/tests/*.ieg
-/tests/*.log
-/tests/*.nc
-/tests/*.nc2
-/tests/*.nc4
-/tests/*.srv
-/tests/*.stderr
-/tests/*.stdout
-/tests/*.trs
+/**/examples/**/*.grb
+/**/examples/**/*.grb2
+/**/examples/**/*.nc
+/**/interfaces/*.log
+/**/interfaces/*.trs
+/**/interfaces/python/*.pyc
+/**/interfaces/python/*.pyo
+/**/interfaces/python/__pycache__
+/**/tests/*.cksum
+/**/tests/*.ext
+/**/tests/*.grb
+/**/tests/*.grb2
+/**/tests/*.ieg
+/**/tests/*.log
+/**/tests/*.nc
+/**/tests/*.nc2
+/**/tests/*.nc4
+/**/tests/*.srv
+/**/tests/*.stderr
+/**/tests/*.stdout
+/**/tests/*.trs
 
 # Documentation stage files:
 /doc/cdi_cman.pdf
 /doc/cdi_fman.pdf
 
 # Dist stage files:
-/cdi-[0-9].[0-9].[0-9]*
-/cdi-[0-9].[0-9][0-9].[0-9]*
-/src/cdilib.c
+/**/cdi-[0-9].[0-9].[0-9]*
+/**/cdi-[0-9].[0-9][0-9].[0-9]*
+/**/src/cdilib.c
 
 # Mac OS files:
 *.dSYM