Commit c0f01291 authored by Sofiane Bendoukha's avatar Sofiane Bendoukha
Browse files

Enable starting jupyter notebook on different frontend.

parent 306c1096
......@@ -6,4 +6,12 @@ tunnel set-up, and start the client application on your local system.
As bash scripts they run natively on Linux, MacOS, and other Unix-like
systems. After installing WSL (Windows Subsystem for Linux), they also run
on Microsoft Windows 10.
\ No newline at end of file
on Microsoft Windows 10.
## start-jupyter
The script is being modified to allow further features:
* connecting to different DKRZ systems: mistral, vader, levante (?)
* start jupyter notebooks in singularity containers
......@@ -44,6 +44,7 @@
# In case of problems contact Mathis Rosenhauer <rosenhauer@dkrz.de>.
#
# 2020, Oct. 7, S. Bendoukha, added support for singularity containers.
# 2021, Apr. 14, S. Bendoukha, added option to specify frontend.
set -eufo pipefail
......@@ -92,7 +93,7 @@ SJ_INCFILE=""
#
# Must be directly accessible from client. The frontend and the node
# where jupyter is running need a shared home file system.
readonly SJ_FRONTEND_HOST="mistralpp.dkrz.de"
SJ_FRONTEND_HOST="mistralpp.dkrz.de"
# Image
#
......@@ -137,19 +138,21 @@ Available values for OPTION include:
-A acctcode start a job with acctcode
-c command invoke jupyter with command
-d check for presence of jupyter
-f system mistral, vader
-i file source file prior to running jupyter
-n ntasks request ntasks tasks for job
-p partition run job on partition
-s image singularity image
-t time job runtime
-u username use username for login
-s image singularity image
EOF
}
function parse_options () {
local option
while getopts 'A:c:di:n:p:t:u:s:' option; do
while getopts 'A:c:di:f:n:p:t:u:s:' option; do
case ${option} in
A) SJ_ACCTCODE="$OPTARG"
;;
......@@ -157,18 +160,20 @@ function parse_options () {
;;
d) SJ_DEBUG=1
;;
f) SJ_FRONTEND_HOST="$OPTARG"
;;
i) SJ_INCFILE="$OPTARG"
;;
n) SJ_NTASKS="$OPTARG"
;;
p) SJ_PARTITION="$OPTARG"
;;
s) SJ_IMAGE="$OPTARG"
;;
t) SJ_RUNTIME="$OPTARG"
;;
u) SJ_USERNAME="$OPTARG"
;;
s) SJ_IMAGE="$OPTARG"
;;
?) usage
exit 1
;;
......@@ -183,6 +188,7 @@ function parse_options () {
readonly SJ_RUNTIME
readonly SJ_USERNAME
readonly SJ_IMAGE
readonly SJ_FRONTEND_HOST
}
function ssh_frontend () {
......@@ -206,7 +212,7 @@ function source_incfile() {
fi
commandline="source ${incfile}; ${commandline}"
else
commandline="module load python3/unstable; ${commandline}"
commandline="module use /sw/spack-rhel6/spack/modules/linux-rhel6-haswell/; module load python3/unstable; ${commandline}"
fi
echo "${commandline}"
}
......
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