diff --git a/README.md b/README.md index 67980ab471834012854617656915d5b12170e023..79e14748880d699bfca24c6fc53bfca52c155ba3 100644 --- a/README.md +++ b/README.md @@ -6,4 +6,12 @@ tunnel set-up, and start the client application on your local system. As bash scripts they run natively on Linux, MacOS, and other Unix-like systems. After installing WSL (Windows Subsystem for Linux), they also run -on Microsoft Windows 10. \ No newline at end of file +on Microsoft Windows 10. + +## start-jupyter + +The script is being modified to allow further features: + +* connecting to different DKRZ systems: mistral, vader, levante (?) +* start jupyter notebooks in singularity containers + diff --git a/start-jupyter b/start-jupyter index 1123dd7b7223caff0bd0a3f327303e4e73384d1d..7bcc788f459d29bc631381f88236be3da234e556 100755 --- a/start-jupyter +++ b/start-jupyter @@ -44,6 +44,7 @@ # In case of problems contact Mathis Rosenhauer <rosenhauer@dkrz.de>. # # 2020, Oct. 7, S. Bendoukha, added support for singularity containers. +# 2021, Apr. 14, S. Bendoukha, added option to specify frontend. set -eufo pipefail @@ -92,7 +93,7 @@ SJ_INCFILE="" # # Must be directly accessible from client. The frontend and the node # where jupyter is running need a shared home file system. -readonly SJ_FRONTEND_HOST="mistralpp.dkrz.de" +SJ_FRONTEND_HOST="mistralpp.dkrz.de" # Image # @@ -137,19 +138,21 @@ Available values for OPTION include: -A acctcode start a job with acctcode -c command invoke jupyter with command -d check for presence of jupyter + -f system mistral, vader -i file source file prior to running jupyter -n ntasks request ntasks tasks for job -p partition run job on partition + -s image singularity image -t time job runtime -u username use username for login - -s image singularity image + EOF } function parse_options () { local option - while getopts 'A:c:di:n:p:t:u:s:' option; do + while getopts 'A:c:di:f:n:p:t:u:s:' option; do case ${option} in A) SJ_ACCTCODE="$OPTARG" ;; @@ -157,18 +160,20 @@ function parse_options () { ;; d) SJ_DEBUG=1 ;; + f) SJ_FRONTEND_HOST="$OPTARG" + ;; i) SJ_INCFILE="$OPTARG" ;; n) SJ_NTASKS="$OPTARG" ;; p) SJ_PARTITION="$OPTARG" ;; + s) SJ_IMAGE="$OPTARG" + ;; t) SJ_RUNTIME="$OPTARG" ;; u) SJ_USERNAME="$OPTARG" ;; - s) SJ_IMAGE="$OPTARG" - ;; ?) usage exit 1 ;; @@ -183,6 +188,7 @@ function parse_options () { readonly SJ_RUNTIME readonly SJ_USERNAME readonly SJ_IMAGE + readonly SJ_FRONTEND_HOST } function ssh_frontend () { @@ -206,7 +212,7 @@ function source_incfile() { fi commandline="source ${incfile}; ${commandline}" else - commandline="module load python3/unstable; ${commandline}" + commandline="module use /sw/spack-rhel6/spack/modules/linux-rhel6-haswell/; module load python3/unstable; ${commandline}" fi echo "${commandline}" }