CMOR: adjusted mpiesm scripts + config for MK errata batch

cmor/mpiesm/scripts/conf/PalMod2_requested_vars_AllExp.conf_errataBatch

+# ##################################################
+# ##################################################
+# CMIP6 PostProcessing Workflow Configuration File
+# ##################################################
+# This configuration file specifies which variables will be
+#  processed for which time intervals.
+# It contains + DREQSETTINGS (computed from the CMIP6-DataRequest) and
+#             + USERSETTINGS (specified by the user)
+# for each experiment.
+#
+# There are 3 types of settings: Standard, TimeSlice, GridAndTimeSlice.
+#
+# -Use '#' for comments (also inline).
+# ##################################################
+
+
+# Data Request Version: 00.00.02
+# Supported MIPs (0):
+# Supported Experiments (0):
+
+
+##################################################
+EXP=AllExp
+##################################################
+
+DREQSETTINGS
+Ofx           : Ofx           = slice: first_step
+fx            : fx            = slice: first_step
+
+USERSETTINGS
+# ---> Specify your settings for Experiment AllExp here
+TOTAL    : TOTAL  = False # only produce variables explicitly set to True
+################
+# Aggregation
+################
+jsbachdecfx     : input         = True
+echamdecfx      : input         = True
+################
+# Ocean
+################
+sftof    : Odec   = True
+################
+# Atmosphere
+################
+orog     : dec    = True
+ps       : Amon   = True
+#################
+# Land
+#################
+sftlf    : dec    = True
+mrsofc   : dec    = True
+rootd    : dec    = True
+sftgif   : dec    = True
+landCoverFrac : Lmon = True
+vegFrac       : Emon = True
+#<---- Specify your settings for Experiment AllExp here

cmor/mpiesm/scripts/palmod2_aggregation_MPI-ESM1-2_jsbach.h

@@ -35,14 +35,14 @@ suf=grb
   $cdo expr,'mrsofc=soil_field_cap*soil_depth*1.e+3;' $ifile ${sdir}/tmp_aggr/tmp_mrsofc_${period}.nc || echo ERROR
 
   for l_yyyy in $(seq $period $(( period + 9 )) ); do
-    $cdo settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 $sdir/tmp_aggr/tmp_slm_$period $sdir/out_aggr/slm_${l_yyyy} || echo ERROR
-    $cdo settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 $sdir/tmp_aggr/tmp_slm_nan_$period $sdir/out_aggr/slm_nan_${l_yyyy} || echo ERROR
-    $cdo settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 $sdir/tmp_aggr/tmp_glac_$period $sdir/out_aggr/glac_${l_yyyy} || echo ERROR
-    $cdo settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 $sdir/tmp_aggr/tmp_veg_ratio_max_mon_ini_$period $sdir/tmp_aggr/veg_ratio_max_mon_ini_${l_yyyy}.tmp || echo ERROR
-    $cdo settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 $sdir/tmp_aggr/tmp_C3C4_crop_mask_$period $sdir/out_aggr/C3C4_crop_mask_${l_yyyy} || echo ERROR
-    $cdo settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 -selname,slm $ifile $sdir/out_aggr/sftlf_${l_yyyy}.nc || echo ERROR
-    $cdo settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 -selname,root_depth $ifile ${sdir}/out_aggr/rootd_${l_yyyy}.nc || echo ERROR
-    $cdo settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 ${sdir}/tmp_aggr/tmp_mrsofc_${period}.nc ${sdir}/out_aggr/mrsofc_${l_yyyy}.nc || echo ERROR
+    $cdo settunits,days -settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 $sdir/tmp_aggr/tmp_slm_$period $sdir/out_aggr/slm_${l_yyyy} || echo ERROR
+    $cdo settunits,days -settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 $sdir/tmp_aggr/tmp_slm_nan_$period $sdir/out_aggr/slm_nan_${l_yyyy} || echo ERROR
+    $cdo settunits,days -settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 $sdir/tmp_aggr/tmp_glac_$period $sdir/out_aggr/glac_${l_yyyy} || echo ERROR
+    $cdo settunits,days -settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 $sdir/tmp_aggr/tmp_veg_ratio_max_mon_ini_$period $sdir/tmp_aggr/veg_ratio_max_mon_ini_${l_yyyy}.tmp || echo ERROR
+    $cdo settunits,days -settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 $sdir/tmp_aggr/tmp_C3C4_crop_mask_$period $sdir/out_aggr/C3C4_crop_mask_${l_yyyy} || echo ERROR
+    $cdo settunits,days -settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 -selname,slm $ifile $sdir/out_aggr/sftlf_${l_yyyy}.nc || echo ERROR
+    $cdo settunits,days -settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 -selname,root_depth $ifile ${sdir}/out_aggr/rootd_${l_yyyy}.nc || echo ERROR
+    $cdo settunits,days -settaxis,${l_yyyy}-01-15,12:00:00,1mon -duplicate,12 ${sdir}/tmp_aggr/tmp_mrsofc_${period}.nc ${sdir}/out_aggr/mrsofc_${l_yyyy}.nc || echo ERROR
   done
 
 }; )&; }>$err.jsbachdecfx.input 2>&1

cmor/mpiesm/scripts/transient-deglaciation-prescribed-glac1d_r1i1p1f1-CR.runpp

@@ -44,7 +44,7 @@ alias ncatted=/sw/spack-levante/nco-5.0.6-3xkdth/bin/ncatted
 
 #Root directory of all scripts, outdata, logs etc
 EXP_ID=transient-deglaciation-prescribed-glac1d_r1i1p1f1-CR
-EXP_DIR_TRUNK=/work/bk1192/k204212/palmod_thirdBatch/transient-deglaciation-prescribed-glac1d_r1i1p1f1-CR
+EXP_DIR_TRUNK=/work/kd1292/k204212/palmod_errataBatch/transient-deglaciation-prescribed-glac1d_r1i1p1f1-CR
 
 # RAW Data - path and sub-simulations
 RAW_EXP_DIR_TRUNK=/work/bk1192/from_Mistral/bk1192/WG1/WP1.1/MPIM_transient_deglaciation_prescribed/