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Commit 49cb5b57 authored by Ralf Mueller's avatar Ralf Mueller :fishing_pole_and_fish:
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move climate exercise to subdir

parent f0c0d87b
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1 merge request!2Draft: add link to debugging document
%% Cell type:code id: tags:
``` python
import intake
col = intake.open_esm_datastore("/pool/data/Catalogs/dkrz_cmip6_disk_netcdf.json")
```
%% Cell type:code id: tags:
``` python
query = dict(
variable_id=["fco2antt","siextentn"],
table_id=["Amon","SImon"],
member_id=["r1i1p1f1"],
experiment_id=["historical"])
cat = col.search(**query)
```
%% Output
/home/dkrz/k202125/kernels/your-kernel/lib/python3.8/site-packages/intake_esm/search.py:50: UserWarning: Query returned zero results.
warn(message)
%% Cell type:code id: tags:
``` python
cat.unique('variable_id')
```
%% Output
{'variable_id': {'count': 2, 'values': ['siextentn', 'fco2antt']}}
%% Cell type:code id: tags:
``` python
print(cat.df)
```
%% Output
activity_id institution_id source_id experiment_id member_id \
0 CMIP AWI AWI-CM-1-1-MR historical r1i1p1f1
1 CMIP AWI AWI-CM-1-1-MR historical r1i1p1f1
2 CMIP AWI AWI-CM-1-1-MR historical r1i1p1f1
3 CMIP AWI AWI-CM-1-1-MR historical r1i1p1f1
4 CMIP AWI AWI-CM-1-1-MR historical r1i1p1f1
.. ... ... ... ... ...
279 CMIP NCC NorESM2-MM historical r1i1p1f1
280 CMIP NCC NorESM2-MM historical r1i1p1f1
281 CMIP NCC NorESM2-MM historical r1i1p1f1
282 CMIP NCC NorESM2-MM historical r1i1p1f1
283 CMIP NCC NorESM2-MM historical r1i1p1f1
table_id variable_id grid_label dcpp_init_year version time_range \
0 SImon siextentn gn NaN v20181218 185001-185012
1 SImon siextentn gn NaN v20181218 185101-186012
2 SImon siextentn gn NaN v20181218 186101-187012
3 SImon siextentn gn NaN v20181218 187101-188012
4 SImon siextentn gn NaN v20181218 188101-189012
.. ... ... ... ... ... ...
279 SImon siextentn gn NaN v20191108 197001-197912
280 SImon siextentn gn NaN v20191108 198001-198912
281 SImon siextentn gn NaN v20191108 199001-199912
282 SImon siextentn gn NaN v20191108 200001-200912
283 SImon siextentn gn NaN v20191108 201001-201412
path \
0 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
1 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
2 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
3 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
4 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
.. ...
279 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
280 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
281 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
282 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
283 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
opendap_url
0 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
1 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
2 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
3 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
4 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
.. ...
279 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
280 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
281 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
282 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
283 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
[284 rows x 13 columns]
%% Cell type:code id: tags:
``` python
cat.unique('source_id')
```
%% Output
{'source_id': {'count': 14,
'values': ['MRI-ESM2-0',
'CESM2-WACCM-FV2',
'CESM2',
'CESM2-FV2',
'AWI-CM-1-1-MR',
'MPI-ESM-1-2-HAM',
'CESM2-WACCM',
'NorESM2-MM',
'INM-CM5-0',
'AWI-ESM-1-1-LR',
'IPSL-CM6A-LR',
'MPI-ESM1-2-HR',
'INM-CM4-8',
'MPI-ESM1-2-LR']}}
%% Cell type:code id: tags:
``` python
xr_dict = cat.to_dataset_dict(cdf_kwargs={"chunks":{"time":1}})
print(xr_dict)
```
%% Output
--> The keys in the returned dictionary of datasets are constructed as follows:
'activity_id.institution_id.source_id.experiment_id.table_id.grid_label'
/home/dkrz/k202125/kernels/your-kernel/lib/python3.8/site-packages/xarray/conventions.py:512: SerializationWarning: variable 'siextentn' has multiple fill values {1e+20, 1e+20}, decoding all values to NaN.
new_vars[k] = decode_cf_variable(
/home/dkrz/k202125/kernels/your-kernel/lib/python3.8/site-packages/xarray/conventions.py:512: SerializationWarning: variable 'siextentn' has multiple fill values {1e+20, 1e+20}, decoding all values to NaN.
new_vars[k] = decode_cf_variable(
/home/dkrz/k202125/kernels/your-kernel/lib/python3.8/site-packages/xarray/conventions.py:512: SerializationWarning: variable 'siextentn' has multiple fill values {1e+20, 1e+20}, decoding all values to NaN.
new_vars[k] = decode_cf_variable(
/home/dkrz/k202125/kernels/your-kernel/lib/python3.8/site-packages/xarray/conventions.py:512: SerializationWarning: variable 'siextentn' has multiple fill values {1e+20, 1e+20}, decoding all values to NaN.
new_vars[k] = decode_cf_variable(
/home/dkrz/k202125/kernels/your-kernel/lib/python3.8/site-packages/xarray/conventions.py:512: SerializationWarning: variable 'siextentn' has multiple fill values {1e+20, 1e+20}, decoding all values to NaN.
new_vars[k] = decode_cf_variable(
/home/dkrz/k202125/kernels/your-kernel/lib/python3.8/site-packages/xarray/conventions.py:512: SerializationWarning: variable 'siextentn' has multiple fill values {1e+20, 1e+20}, decoding all values to NaN.
new_vars[k] = decode_cf_variable(
{'CMIP.NCAR.CESM2-WACCM.historical.SImon.gn': <xarray.Dataset>
Dimensions: (member_id: 1, time: 1980, d2: 2)
Coordinates:
* time (time) object 1850-01-15 12:00:00 ... 2014-12-15 12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: d2
Data variables:
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
time_bnds (time, d2) object dask.array<chunksize=(1, 2), meta=np.ndarray>
Attributes: (12/46)
Conventions: CF-1.7 CMIP-6.2
activity_id: CMIP
case_id: 4
cesm_casename: b.e21.BWHIST.f09_g17.CMIP6-historical-WACCM.001
contact: cesm_cmip6@ucar.edu
creation_date: 2019-01-30T21:01:57Z
... ...
variant_label: r1i1p1f1
branch_time_in_parent: 20075.0
branch_time_in_child: 674885.0
branch_method: standard
intake_esm_varname: ['siextentn']
intake_esm_dataset_key: CMIP.NCAR.CESM2-WACCM.historical.SImon.gn, 'CMIP.NCAR.CESM2.historical.SImon.gn': <xarray.Dataset>
Dimensions: (member_id: 1, time: 1980, d2: 2)
Coordinates:
* time (time) object 1850-01-15 12:00:00 ... 2014-12-15 12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: d2
Data variables:
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
time_bnds (time, d2) object dask.array<chunksize=(1, 2), meta=np.ndarray>
Attributes: (12/46)
Conventions: CF-1.7 CMIP-6.2
activity_id: CMIP
case_id: 15
cesm_casename: b.e21.BHIST.f09_g17.CMIP6-historical.001
contact: cesm_cmip6@ucar.edu
creation_date: 2019-01-16T23:19:37Z
... ...
branch_time_in_parent: 219000.0
branch_time_in_child: 674885.0
branch_method: standard
further_info_url: https://furtherinfo.es-doc.org/CMIP6.NCAR.CESM2....
intake_esm_varname: ['siextentn']
intake_esm_dataset_key: CMIP.NCAR.CESM2.historical.SImon.gn, 'CMIP.MPI-M.MPI-ESM1-2-LR.historical.SImon.gn': <xarray.Dataset>
Dimensions: (time: 1980, bnds: 2, member_id: 1)
Coordinates:
* time (time) datetime64[ns] 1850-01-16T12:00:00 ... 2014-12-16T12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: bnds
Data variables:
time_bnds (time, bnds) datetime64[ns] dask.array<chunksize=(1, 2), meta=np.ndarray>
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
Attributes: (12/48)
project_id: CMIP6
creation_date: 2019-09-04T13:52:10Z
branch_time_in_child: 0.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.MPI-M.MPI-E...
nominal_resolution: 250 km
realization_index: 1
... ...
experiment_id: historical
intake_esm_varname: ['siextentn']
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by MPI-M is licensed u...
data_specs_version: 01.00.30
intake_esm_dataset_key: CMIP.MPI-M.MPI-ESM1-2-LR.historical.SImon.gn, 'CMIP.NCC.NorESM2-MM.historical.SImon.gn': <xarray.Dataset>
Dimensions: (time: 1980, bnds: 2, member_id: 1)
Coordinates:
* time (time) object 1850-01-16 12:00:00 ... 2014-12-16 12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: bnds
Data variables:
time_bnds (time, bnds) object dask.array<chunksize=(1, 2), meta=np.ndarray>
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
Attributes: (12/50)
creation_date: 2019-12-10T04:40:17Z
branch_time_in_child: 0.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.NCC.NorES...
nominal_resolution: 100 km
realization_index: 1
branch_method: Hybrid-restart from year 1200-01-01 of piControl
... ...
experiment_id: historical
intake_esm_varname: ['siextentn']
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by NCC is licensed u...
data_specs_version: 01.00.31
intake_esm_dataset_key: CMIP.NCC.NorESM2-MM.historical.SImon.gn, 'CMIP.NCAR.CESM2-FV2.historical.SImon.gn': <xarray.Dataset>
Dimensions: (member_id: 1, time: 1980, d2: 2)
Coordinates:
* time (time) object 1850-01-15 12:00:00 ... 2014-12-15 12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: d2
Data variables:
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
time_bnds (time, d2) object dask.array<chunksize=(1, 2), meta=np.ndarray>
Attributes: (12/45)
branch_time_in_child: 674885.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.NCAR.CESM2-...
nominal_resolution: 250 km
realization_index: 1
branch_method: standard
experiment: Simulation of recent past (1850 to 2014). Impose...
... ...
experiment_id: historical
intake_esm_varname: ['siextentn']
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by <The National Cente...
data_specs_version: 01.00.31
intake_esm_dataset_key: CMIP.NCAR.CESM2-FV2.historical.SImon.gn, 'CMIP.HAMMOZ-Consortium.MPI-ESM-1-2-HAM.historical.SImon.gn': <xarray.Dataset>
Dimensions: (time: 1980, bnds: 2, member_id: 1)
Coordinates:
* time (time) datetime64[ns] 1850-01-16T12:00:00 ... 2014-12-16T12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: bnds
Data variables:
time_bnds (time, bnds) datetime64[ns] dask.array<chunksize=(1, 2), meta=np.ndarray>
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
Attributes: (12/48)
project_id: CMIP6
creation_date: 2019-11-24T15:37:56Z
branch_time_in_child: 0.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.MPI-M.MPI-E...
nominal_resolution: 250 km
realization_index: 1
... ...
experiment_id: historical
intake_esm_varname: ['siextentn']
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by the HAMMOZ-Consorti...
data_specs_version: 01.00.30
intake_esm_dataset_key: CMIP.HAMMOZ-Consortium.MPI-ESM-1-2-HAM.historica..., 'CMIP.INM.INM-CM4-8.historical.SImon.gr1': <xarray.Dataset>
Dimensions: (time: 1980, bnds: 2, member_id: 1)
Coordinates:
* time (time) object 1850-01-16 12:00:00 ... 2014-12-16 12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: bnds
Data variables:
time_bnds (time, bnds) object dask.array<chunksize=(1, 2), meta=np.ndarray>
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
Attributes: (12/47)
branch_time_in_child: 0.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.INM.INM-CM4...
nominal_resolution: 100 km
realization_index: 1
branch_method: standard
experiment: all-forcing simulation of the recent past
... ...
experiment_id: historical
intake_esm_varname: ['siextentn']
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by Lawrence Livermore ...
data_specs_version: 01.00.29
intake_esm_dataset_key: CMIP.INM.INM-CM4-8.historical.SImon.gr1, 'CMIP.INM.INM-CM5-0.historical.SImon.gr1': <xarray.Dataset>
Dimensions: (time: 1980, bnds: 2, member_id: 1)
Coordinates:
* time (time) object 1850-01-16 12:00:00 ... 2014-12-16 12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: bnds
Data variables:
time_bnds (time, bnds) object dask.array<chunksize=(1, 2), meta=np.ndarray>
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
Attributes: (12/48)
Conventions: CF-1.7 CMIP-6.2
activity_id: CMIP
branch_method: standard
branch_time_in_child: 0.0
branch_time_in_parent: 90885.0
contact: Evgeny Volodin (volodinev@gmail.com)
... ...
variable_id: siextentn
variant_label: r1i1p1f1
license: CMIP6 model data produced by Lawrence Livermore ...
cmor_version: 3.4.0
intake_esm_varname: ['siextentn']
intake_esm_dataset_key: CMIP.INM.INM-CM5-0.historical.SImon.gr1, 'CMIP.MRI.MRI-ESM2-0.historical.SImon.gm': <xarray.Dataset>
Dimensions: (time: 1980, bnds: 2, member_id: 1)
Coordinates:
* time (time) datetime64[ns] 1850-01-16T12:00:00 ... 2014-12-16T12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: bnds
Data variables:
time_bnds (time, bnds) datetime64[ns] dask.array<chunksize=(1, 2), meta=np.ndarray>
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
Attributes: (12/45)
Conventions: CF-1.7 CMIP-6.2
activity_id: CMIP
branch_method: standard
branch_time_in_child: 0.0
branch_time_in_parent: 0.0
creation_date: 2019-12-05T05:01:30Z
... ...
variant_label: r1i1p1f1
license: CMIP6 model data produced by MRI is licensed und...
cmor_version: 3.5.0
tracking_id: hdl:21.14100/34467cf1-efb1-4019-8115-224d03d5d998
intake_esm_varname: ['siextentn']
intake_esm_dataset_key: CMIP.MRI.MRI-ESM2-0.historical.SImon.gm, 'CMIP.AWI.AWI-ESM-1-1-LR.historical.SImon.gn': <xarray.Dataset>
Dimensions: (time: 1980, bnds: 2, member_id: 1, nodes: 1, ncells: 126859, vertices: 18)
Coordinates:
* time (time) datetime64[ns] 1850-01-16T12:00:00 ... 2014-12-16T12:00:00
lat (ncells) float64 dask.array<chunksize=(126859,), meta=np.ndarray>
lon (ncells) float64 dask.array<chunksize=(126859,), meta=np.ndarray>
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: bnds, nodes, ncells, vertices
Data variables:
time_bnds (time, bnds) datetime64[ns] dask.array<chunksize=(1, 2), meta=np.ndarray>
siextentn (member_id, time, nodes) float32 dask.array<chunksize=(1, 1, 1), meta=np.ndarray>
lat_bnds (ncells, vertices) float64 dask.array<chunksize=(126859, 18), meta=np.ndarray>
lon_bnds (ncells, vertices) float64 dask.array<chunksize=(126859, 18), meta=np.ndarray>
Attributes: (12/41)
creation_date: 2020-02-12T12:00:00Z
branch_time_in_child: 0.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.AWI.AWI-ESM...
nominal_resolution: 50 km
realization_index: 1
branch_method: standard
... ...
experiment_id: historical
intake_esm_varname: ['siextentn']
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by Alfred Wegener Inst...
data_specs_version: 01.00.30
intake_esm_dataset_key: CMIP.AWI.AWI-ESM-1-1-LR.historical.SImon.gn, 'CMIP.IPSL.IPSL-CM6A-LR.historical.SImon.gn': <xarray.Dataset>
Dimensions: (y: 1, x: 1, nvertex: 4, time: 1980, axis_nbounds: 2, member_id: 1)
Coordinates:
nav_lat (y, x) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
nav_lon (y, x) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
* time (time) datetime64[ns] 1850-01-16T12:00:00 ... 2014-12-16T...
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: y, x, nvertex, axis_nbounds
Data variables:
bounds_nav_lon (y, x, nvertex) float32 dask.array<chunksize=(1, 1, 4), meta=np.ndarray>
bounds_nav_lat (y, x, nvertex) float32 dask.array<chunksize=(1, 1, 4), meta=np.ndarray>
area (y, x) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
time_bounds (time, axis_nbounds) datetime64[ns] dask.array<chunksize=(1, 2), meta=np.ndarray>
siextentn (member_id, time, y, x) float32 dask.array<chunksize=(1, 1, 1, 1), meta=np.ndarray>
Attributes: (12/52)
Conventions: CF-1.7 CMIP-6.2
creation_date: 2018-07-11T07:36:13Z
tracking_id: hdl:21.14100/acf4bd21-02d3-4422-b23b-69c252779d5c
description: CMIP6 historical
title: IPSL-CM6A-LR model output prepared for CMIP6 / C...
activity_id: CMIP
... ...
variant_label: r1i1p1f1
realization_index: 1
history: Sat Dec 1 12:14:26 2018: ncatted -O -a realizat...
NCO: "4.6.0"
intake_esm_varname: ['siextentn']
intake_esm_dataset_key: CMIP.IPSL.IPSL-CM6A-LR.historical.SImon.gn, 'CMIP.MPI-M.MPI-ESM1-2-HR.historical.SImon.gn': <xarray.Dataset>
Dimensions: (time: 1980, bnds: 2, member_id: 1)
Coordinates:
* time (time) datetime64[ns] 1850-01-16T12:00:00 ... 2014-12-16T12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: bnds
Data variables:
time_bnds (time, bnds) datetime64[ns] dask.array<chunksize=(1, 2), meta=np.ndarray>
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
Attributes: (12/48)
project_id: CMIP6
creation_date: 2019-08-25T07:51:35Z
branch_time_in_child: 0.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.MPI-M.MPI-E...
nominal_resolution: 50 km
realization_index: 1
... ...
experiment_id: historical
intake_esm_varname: ['siextentn']
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by MPI-M is licensed u...
data_specs_version: 01.00.30
intake_esm_dataset_key: CMIP.MPI-M.MPI-ESM1-2-HR.historical.SImon.gn, 'CMIP.NCAR.CESM2-WACCM-FV2.historical.SImon.gn': <xarray.Dataset>
Dimensions: (member_id: 1, time: 1980, d2: 2)
Coordinates:
* time (time) object 1850-01-15 12:00:00 ... 2014-12-15 12:00:00
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: d2
Data variables:
siextentn (member_id, time) float32 dask.array<chunksize=(1, 1), meta=np.ndarray>
time_bnds (time, d2) object dask.array<chunksize=(1, 2), meta=np.ndarray>
Attributes: (12/45)
branch_time_in_child: 674885.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.NCAR.CESM2-...
nominal_resolution: 100 km
realization_index: 1
branch_method: standard
experiment: Simulation of recent past (1850 to 2014). Impose...
... ...
experiment_id: historical
intake_esm_varname: ['siextentn']
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by <The National Cente...
data_specs_version: 01.00.31
intake_esm_dataset_key: CMIP.NCAR.CESM2-WACCM-FV2.historical.SImon.gn, 'CMIP.AWI.AWI-CM-1-1-MR.historical.SImon.gn': <xarray.Dataset>
Dimensions: (time: 1980, member_id: 1, nodes: 1, number_of_time_bounds: 2, ncells: 830305, vertices: 16)
Coordinates:
* time (time) datetime64[ns] 1850-01-16T12:00:00 ... 2014-12-16T12:00:00
lat (ncells) float64 dask.array<chunksize=(830305,), meta=np.ndarray>
lon (ncells) float64 dask.array<chunksize=(830305,), meta=np.ndarray>
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: nodes, number_of_time_bounds, ncells, vertices
Data variables:
siextentn (member_id, time, nodes) float32 dask.array<chunksize=(1, 1, 1), meta=np.ndarray>
time_bnds (time, number_of_time_bounds) datetime64[ns] dask.array<chunksize=(1, 2), meta=np.ndarray>
lat_bnds (ncells, vertices) float64 dask.array<chunksize=(830305, 16), meta=np.ndarray>
lon_bnds (ncells, vertices) float64 dask.array<chunksize=(830305, 16), meta=np.ndarray>
Attributes: (12/41)
creation_date: 2018-12-18T12:00:00Z
branch_time_in_child: 0.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.AWI.AWI-CM-...
nominal_resolution: 25 km
realization_index: 1
branch_method: standard
... ...
experiment_id: historical
intake_esm_varname: ['siextentn']
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by Alfred Wegener Inst...
data_specs_version: 01.00.27
intake_esm_dataset_key: CMIP.AWI.AWI-CM-1-1-MR.historical.SImon.gn, 'CMIP.AWI.AWI-ESM-1-1-LR.historical.Amon.gn': <xarray.Dataset>
Dimensions: (time: 1980, bnds: 2, lat: 96, lon: 192, member_id: 1)
Coordinates:
* time (time) datetime64[ns] 1850-01-16T12:00:00 ... 2014-12-16T12:00:00
* lat (lat) float64 -88.57 -86.72 -84.86 -83.0 ... 84.86 86.72 88.57
* lon (lon) float64 0.0 1.875 3.75 5.625 ... 352.5 354.4 356.2 358.1
* member_id (member_id) <U8 'r1i1p1f1'
Dimensions without coordinates: bnds
Data variables:
time_bnds (time, bnds) datetime64[ns] dask.array<chunksize=(1, 2), meta=np.ndarray>
lat_bnds (lat, bnds) float64 dask.array<chunksize=(96, 2), meta=np.ndarray>
lon_bnds (lon, bnds) float64 dask.array<chunksize=(192, 2), meta=np.ndarray>
fco2antt (member_id, time, lat, lon) float32 dask.array<chunksize=(1, 1, 96, 192), meta=np.ndarray>
Attributes: (12/46)
creation_date: 2020-04-01T06:55:16Z
branch_time_in_child: 0.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.AWI.AWI-ESM...
nominal_resolution: 250 km
realization_index: 1
branch_method: standard
... ...
experiment_id: historical
intake_esm_varname: ['fco2antt']
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by Alfred Wegener Inst...
data_specs_version: 01.00.30
intake_esm_dataset_key: CMIP.AWI.AWI-ESM-1-1-LR.historical.Amon.gn}
%% Cell type:code id: tags:
``` python
xr_dict.keys()
```
%% Output
dict_keys(['CMIP.NCAR.CESM2-WACCM.historical.SImon.gn', 'CMIP.NCAR.CESM2.historical.SImon.gn', 'CMIP.MPI-M.MPI-ESM1-2-LR.historical.SImon.gn', 'CMIP.NCC.NorESM2-MM.historical.SImon.gn', 'CMIP.NCAR.CESM2-FV2.historical.SImon.gn', 'CMIP.HAMMOZ-Consortium.MPI-ESM-1-2-HAM.historical.SImon.gn', 'CMIP.INM.INM-CM4-8.historical.SImon.gr1', 'CMIP.INM.INM-CM5-0.historical.SImon.gr1', 'CMIP.MRI.MRI-ESM2-0.historical.SImon.gm', 'CMIP.AWI.AWI-ESM-1-1-LR.historical.SImon.gn', 'CMIP.IPSL.IPSL-CM6A-LR.historical.SImon.gn', 'CMIP.MPI-M.MPI-ESM1-2-HR.historical.SImon.gn', 'CMIP.NCAR.CESM2-WACCM-FV2.historical.SImon.gn', 'CMIP.AWI.AWI-CM-1-1-MR.historical.SImon.gn', 'CMIP.AWI.AWI-ESM-1-1-LR.historical.Amon.gn'])
%% Cell type:code id: tags:
``` python
for k,v in xr_dict.items():
print(k)
if ('AWI' in k) or ('IPSL' in k):
continue
v.squeeze('member_id').to_netcdf(k+'.nc')
```
%% Output
CMIP.NCAR.CESM2-WACCM.historical.SImon.gn
CMIP.NCAR.CESM2.historical.SImon.gn
CMIP.MPI-M.MPI-ESM1-2-LR.historical.SImon.gn
CMIP.NCC.NorESM2-MM.historical.SImon.gn
CMIP.NCAR.CESM2-FV2.historical.SImon.gn
CMIP.HAMMOZ-Consortium.MPI-ESM-1-2-HAM.historical.SImon.gn
CMIP.INM.INM-CM4-8.historical.SImon.gr1
CMIP.INM.INM-CM5-0.historical.SImon.gr1
CMIP.MRI.MRI-ESM2-0.historical.SImon.gm
CMIP.AWI.AWI-ESM-1-1-LR.historical.SImon.gn
CMIP.IPSL.IPSL-CM6A-LR.historical.SImon.gn
CMIP.MPI-M.MPI-ESM1-2-HR.historical.SImon.gn
CMIP.NCAR.CESM2-WACCM-FV2.historical.SImon.gn
CMIP.AWI.AWI-CM-1-1-MR.historical.SImon.gn
CMIP.AWI.AWI-ESM-1-1-LR.historical.Amon.gn
%% Cell type:code id: tags:
``` python
import xarray as xr
ds = xr.open_dataset('CMIP.NCAR.CESM2-WACCM-FV2.historical.SImon.gn.nc')
ds
```
%% Output
<xarray.Dataset>
Dimensions: (member_id: 1, time: 1980, d2: 2)
Coordinates:
* time (time) object 1850-01-15 12:00:00 ... 2014-12-15 12:00:00
* member_id (member_id) object 'r1i1p1f1'
Dimensions without coordinates: d2
Data variables:
siextentn (member_id, time) float32 ...
time_bnds (time, d2) object ...
Attributes: (12/45)
branch_time_in_child: 674885.0
further_info_url: https://furtherinfo.es-doc.org/CMIP6.NCAR.CESM2-...
nominal_resolution: 100 km
realization_index: 1
branch_method: standard
experiment: Simulation of recent past (1850 to 2014). Impose...
... ...
experiment_id: historical
intake_esm_varname: siextentn
Conventions: CF-1.7 CMIP-6.2
license: CMIP6 model data produced by <The National Cente...
data_specs_version: 01.00.31
intake_esm_dataset_key: CMIP.NCAR.CESM2-WACCM-FV2.historical.SImon.gn
%% Cell type:code id: tags:
``` python
print(cat.df)
```
%% Output
activity_id institution_id source_id experiment_id member_id \
0 CMIP AWI AWI-CM-1-1-MR historical r1i1p1f1
1 CMIP AWI AWI-CM-1-1-MR historical r1i1p1f1
2 CMIP AWI AWI-CM-1-1-MR historical r1i1p1f1
3 CMIP AWI AWI-CM-1-1-MR historical r1i1p1f1
4 CMIP AWI AWI-CM-1-1-MR historical r1i1p1f1
.. ... ... ... ... ...
279 CMIP NCC NorESM2-MM historical r1i1p1f1
280 CMIP NCC NorESM2-MM historical r1i1p1f1
281 CMIP NCC NorESM2-MM historical r1i1p1f1
282 CMIP NCC NorESM2-MM historical r1i1p1f1
283 CMIP NCC NorESM2-MM historical r1i1p1f1
table_id variable_id grid_label dcpp_init_year version time_range \
0 SImon siextentn gn NaN v20181218 185001-185012
1 SImon siextentn gn NaN v20181218 185101-186012
2 SImon siextentn gn NaN v20181218 186101-187012
3 SImon siextentn gn NaN v20181218 187101-188012
4 SImon siextentn gn NaN v20181218 188101-189012
.. ... ... ... ... ... ...
279 SImon siextentn gn NaN v20191108 197001-197912
280 SImon siextentn gn NaN v20191108 198001-198912
281 SImon siextentn gn NaN v20191108 199001-199912
282 SImon siextentn gn NaN v20191108 200001-200912
283 SImon siextentn gn NaN v20191108 201001-201412
path \
0 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
1 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
2 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
3 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
4 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
.. ...
279 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
280 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
281 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
282 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
283 /mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMI...
opendap_url
0 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
1 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
2 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
3 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
4 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
.. ...
279 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
280 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
281 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
282 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
283 http://esgf3.dkrz.de/thredds/dodsC/cmip6/CMIP/...
[284 rows x 13 columns]
%% Cell type:code id: tags:
``` python
for p in cat.df["path"]:
print(p)
```
%% Output
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_185001-185012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_185101-186012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_186101-187012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_187101-188012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_188101-189012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_189101-190012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_190101-191012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_191101-192012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_192101-193012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_193101-194012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_194101-195012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_195101-196012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_196101-197012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_197101-198012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_198101-199012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_199101-200012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_200101-201012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-CM-1-1-MR/historical/r1i1p1f1/SImon/siextentn/gn/v20181218/siextentn_SImon_AWI-CM-1-1-MR_historical_r1i1p1f1_gn_201101-201412.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_185001-185012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_185101-185112.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_185201-185212.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_185301-185312.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_185401-185412.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_185501-185512.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_185601-185612.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_185701-185712.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_185801-185812.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_185901-185912.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_186001-186012.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_186101-186112.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_186201-186212.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_186301-186312.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_186401-186412.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_186501-186512.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_186601-186612.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_186701-186712.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_186801-186812.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_186901-186912.nc
/mnt/lustre02/work/ik1017/CMIP6/data/CMIP6/CMIP/AWI/AWI-ESM-1-1-LR/historical/r1i1p1f1/Amon/fco2antt/gn/v20200212/fco2antt_Amon_AWI-ESM-1-1-LR_historical_r1i1p1f1_gn_187001-187012.nc
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%% Cell type:code id: tags:
``` python
import intake
col = intake.open_esm_datastore("/pool/data/Catalogs/dkrz_cmip6_disk_netcdf.json")
```
%% Cell type:code id: tags:
``` python
query=dict(variable_id=["siextentn","co2mass"],member_id=['r1i1p1f1'],
experiment_id="historical")
cat=col.search(require_all_on=["source_id"],
**query)
cat.unique("table_id")
```
%% Cell type:code id: tags:
``` python
cat.df
```
%% Cell type:code id: tags:
``` python
print(cat.df)
```
%% Cell type:code id: tags:
``` python
xr_dict = cat.to_dataset_dict(cdf_kwargs={"chunks":{"time":1}})
print(xr_dict)
```
%% Cell type:code id: tags:
``` python
xr_dict.keys()
```
%% Cell type:code id: tags:
``` python
for k,v in xr_dict.items():
print(k)
if ('AWI' in k) or ('IPSL' in k):
continue
v.squeeze('member_id').to_netcdf(k+'.nc')
```
%% Cell type:code id: tags:
``` python
import xarray as xr
ds = xr.open_dataset('CMIP.NCAR.CESM2-WACCM-FV2.historical.SImon.gn.nc')
ds
```
%% Cell type:code id: tags:
``` python
print(cat.df)
```
%% Cell type:code id: tags:
``` python
for p in cat.df["path"]:
print(p)
```
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