Merge branch 'develop' into mgf

.ci/bb/breeze-mpim/test.all.clang

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_clang1201
+
+# Check the formatting. Note that git-clang-format might keep redundant blank
+# lines. Therefore, we use clang-format:
+find src app \
+  -name '*.h' -o -name '*.hpp' -o -name '*.c' -o -name '*.cpp' | \
+    xargs -n 1 -P 8 clang-format --Werror --dry-run --verbose
+
+test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
+
+"${top_srcdir}/configure" \
+--disable-maintainer-mode \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes="${ECCODES_ROOT}" \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${MPICC}" \
+CPPFLAGS="-I${UUID_ROOT}/include" \
+FC="${MPIFC}" \
+F77="${MPIFC}" \
+LDFLAGS="-I${UUID_ROOT}/lib" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log

.ci/bb/breeze-mpim/test.all.nag

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_nag626223
+
+test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
+
+# Create a distribution file with minimalistic configuration:
+"${top_srcdir}/configure"
+make -j1 dist
+
+# Create a subdirectory for further testing and switch to it:
+mkdir check_dist && cd check_dist
+
+# Move the distribution file to the test directory and unpack it:
+mv ../cdi-*.tar.gz ./
+tar xf cdi-*.tar.gz
+
+# Create a subdirectory for building and switch to it:
+mkdir build && cd build
+
+# Use GCC from the path when compiling/linking Fortran code:
+FCFLAGS="-O2 -g -Wc=$(which gcc)"
+
+# Create an out-of-source configuration:
+../cdi-*/configure \
+--disable-maintainer-mode \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes="${ECCODES_ROOT}" \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${MPICC}" \
+CPPFLAGS="-I${UUID_ROOT}/include" \
+F77="${MPIFC}" \
+FC="${MPIFC}" \
+FCFLAGS="${FCFLAGS}" \
+FFLAGS="${FCFLAGS}" \
+LDFLAGS="-I${UUID_ROOT}/lib" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log
+
+make -j8 distclean
+
+check_no_files_in_cwd

.ci/bb/breeze-mpim/test.all.nv

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_nv2130
+
+# We want to check with the Debian version of Libtool, which is patched to avoid
+# overlinking:
+( export PATH="/usr/bin:${PATH-}"
+  export ACLOCAL_PATH="/usr/share/aclocal:${ACLOCAL_PATH-}"
+  module unload automake/1.16.1
+  module load automake/1.16.1
+  "${top_srcdir}/autogen.sh" )
+
+"${top_srcdir}/configure" \
+--disable-maintainer-mode \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes="${ECCODES_ROOT}" \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${MPICC}" \
+CPPFLAGS="-I${UUID_ROOT}/include" \
+F77="${MPIFC}" \
+FC="${MPIFC}" \
+FCFLAGS='-g -fPIC' \
+LDFLAGS="-I${UUID_ROOT}/lib" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log
+
+# Check that an executable is not overlinked to libscalesppmcore.so:
+tested_file='./examples/pio/.libs/collectData'
+invalid_needed=`readelf -d "${tested_file}" | sed -E -n '/\(NEEDED\).*libscalesppmcore\.so/p'` || {
+  echo "ERROR: failed to check '${tested_file}' for ELF NEEDED entries" >&2
+  exit 1
+}
+if test -n "${invalid_needed}"; then
+  {
+    echo "ERROR: '${tested_file}' has excessive ELF NEEDED entries:" >&2
+    echo "${invalid_needed}" >&2
+  } >&2
+  exit 1
+fi

.ci/bb/breeze-mpim/test.ru-py.gcc

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_gcc630
+
+test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
+
+"${top_srcdir}/configure" \
+--disable-maintainer-mode \
+--enable-option-checking=fatal \
+--enable-python \
+--enable-ruby \
+--enable-swig \
+--with-eccodes="${ECCODES_ROOT}" \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${CC}" \
+CPPFLAGS="-I${UUID_ROOT}/include" \
+CXX="${CXX}" \
+LDFLAGS="-L${UUID_ROOT}/lib"
+
+make -j8
+
+# Test the interfaces:
+LD_LIBRARY_PATH="${NETCDF_ROOT}/lib:${LD_LIBRARY_PATH}" make -j8 -C interfaces test
+(cd interfaces && ./CdiInfo)
+
+make -j8 check

.ci/bb/breeze-mpim/utils.sh

+#
+# Accepts a list of environment modules and loads them witch conflict
+# resolution.
+#
+switch_for_module ()
+{
+  for sfm_module in "$@"; do
+    sfm_module_full=
+    sfm_module_short=
+    case $sfm_module in
+      */*)
+        # The module is provided with the version part:
+        sfm_module_full=$sfm_module
+        sfm_module_short=`echo $sfm_module | sed 's%/[^/]*$%%'` ;;
+      *)
+        # Only the name of the module is provided, get the default version:
+        sfm_module_full=`module show $sfm_module 2>&1 | sed -n "s%^[^ \t]*/\\($sfm_module.*\\):%\\1%p"`
+        sfm_module_short=$sfm_module ;;
+    esac
+
+    # A space-separated list of modules that are already loaded:
+    sfm_loaded_full=`module -t list 2>&1 | tr '\n' ' ' | sed 's/^.*Modulefiles://' | sed 's/(default)//g'`
+
+    # Check whether the requested module if already loaded:
+    if test -n "$sfm_module_full"; then
+      case " $sfm_loaded_full " in
+        *" $sfm_module_full "*)
+          echo "module $sfm_module is already loaded"
+          continue ;;
+      esac
+    fi
+
+    # A list of modules in conflict:
+    sfm_conflicts=`module show $sfm_module 2>&1 | sed -n 's/^conflict\(.*\)/\1/p' | tr '\n\t' '  '`
+
+    # A list of loaded modules without version parts:
+    sfm_loaded_short=`echo "$sfm_loaded_full" | sed 's%\([^ ][^ ]*\)/[^ ]*%\1%g'`
+
+    # Add the short name of the module to the list of conflicts:
+    sfm_conflicts="$sfm_conflicts $sfm_module_short"
+
+    # A list of loaded modules that are in conflict with the requested module:
+    sfm_loaded_conflicts=
+    for sfm_conflict in $sfm_conflicts""; do
+      sfm_loaded_list=      
+      case $sfm_conflict in
+        */*)
+          # The conflict is specified with the version part:
+          sfm_loaded_list=$sfm_loaded_full ;;
+        *)
+          # The conflict is specified without the version part:
+          sfm_loaded_list=$sfm_loaded_short ;;
+      esac
+
+      # Check that the conflicted module is loaded:
+      case " $sfm_loaded_list " in
+        *" $sfm_conflict "*)
+          # The conflict is loaded, check whether it is already added to the
+          # list:
+          case " $sfm_loaded_conflicts " in
+            *" $sfm_conflict "*) ;;
+            *)
+              # The conflict is not in the list, append:
+              sfm_loaded_conflicts="$sfm_loaded_conflicts $sfm_conflict" ;;
+          esac
+        ;;
+      esac
+    done
+
+    # Calculate the number of modules that must be unloaded to before loading
+    # the requested module:
+    sfm_loaded_conflicts_count=`echo $sfm_loaded_conflicts | wc -w`
+
+    case $sfm_loaded_conflicts_count in
+      0)
+        # None of the conflicting modules is loaded:
+        sfm_cmd="module load $sfm_module" ;;
+      1)
+        # There is only one module that must be unloaded, use switch command:
+        sfm_cmd="module switch $sfm_loaded_conflicts $sfm_module" ;;
+      *)
+        # There is more than one module that must be unloaded, unload all of
+        # them and then load the requested one:
+        sfm_cmd="module unload $sfm_loaded_conflicts && module load $sfm_module" ;;
+    esac
+
+    echo "$sfm_cmd"
+    eval "$sfm_cmd"
+  done
+}
+
+#
+# Initializes the environment.
+#
+init_env ()
+{
+  saved_set=$-
+  set +eu
+  . /etc/profile.d/mpim.sh
+  set -${saved_set}
+  switch_for_module automake/1.16.1
+
+  # Use non-Debian libtool by default:
+  LIBTOOL_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/libtool-2.4.6-qdyaqqw'
+  export PATH="${LIBTOOL_ROOT}/bin:${PATH-}"
+  export ACLOCAL_PATH="${LIBTOOL_ROOT}/share/aclocal:${ACLOCAL_PATH-}"
+
+  SWIG_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/swig-4.0.2-busrrtn'
+  RUBY_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/ruby-3.0.2-stqm2vj'
+  PYTHON_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/python-2.7.18-zqrnwom'
+
+  export PATH="${RUBY_ROOT}/bin:${PYTHON_ROOT}/bin:${SWIG_ROOT}/bin:${PATH-}"
+}
+
+#
+# Sets variables for tests with GCC 6.3.0.
+#
+init_gcc630 ()
+{
+  init_env
+  switch_for_module gcc/6.3.0
+
+  CC=gcc
+  CXX=g++
+  FC=gfortran
+
+  ECCODES_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/eccodes-2.21.0-3sdngaq'
+  NETCDF_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/netcdf-c-4.8.0-fzupaca'
+  UUID_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/libuuid-1.0.3-rm4kv2o'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  HDF5_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/hdf5-1.10.7-4l3frcp'
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Sets variables for tests with NVHPC 21.3.0.
+#
+init_nv2130 ()
+{
+  init_env
+  switch_for_module gcc/6.3.0
+
+  export NVHPC='/data/mpi/sclab/sip/m300488/nvhpc'
+  export NVLOCALRC="${NVHPC}/Linux_x86_64/21.3/compilers/bin/localrc.60300"
+  export PATH="${NVHPC}/Linux_x86_64/21.3/compilers/bin:${PATH-}"
+
+  CC=nvc
+  CXX=nvc++
+  FC=nvfortran
+
+  export PATH="/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nvhpc-21.3-sandybridge/mpich-3.4.2-sfxulsj/bin:${PATH-}"
+  MPICC=mpicc
+  MPIFC=mpif90
+  MPI_LAUNCH="$(which mpirun)"
+
+  ECCODES_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/eccodes-2.21.0-3sdngaq'
+  NETCDF_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nvhpc-21.3-sandybridge/netcdf-c-4.8.0-vjppuov'
+  PPM_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nvhpc-21.3-sandybridge/scales-ppm-1.0.7-uy4z72r'
+  YAXT_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nvhpc-21.3-sandybridge/yaxt-0.9.2.1-lbqqemx'
+  UUID_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/libuuid-1.0.3-rm4kv2o'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  HDF5_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nvhpc-21.3-sandybridge/hdf5-1.10.7-h7pvthl'
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Sets variables for tests with Clang 12.0.1.
+#
+init_clang1201 ()
+{
+  init_env
+  switch_for_module gcc/6.3.0
+
+  export PATH="/data/mpi/sclab/sip/m300488/clang/12.0.1/bin:${PATH-}"
+  # Clang does not inject RPATHs to the standard library in use:
+  export LD_LIBRARY_PATH="/sw/stretch-x64/gcc/gcc-6.3.0/lib64:${LD_LIBRARY_PATH-}"
+
+  CC=clang
+  CXX=clang++
+  FC=gfortran
+
+  export PATH="/data/mpi/sclab/sip/m300488/libcdi-ci-sw/clang-12.0.1-sandybridge/openmpi-4.1.1-6ydagyy/bin:${PATH-}"
+  MPICC=mpicc
+  MPIFC=mpif90
+  MPI_LAUNCH="$(which mpirun) --oversubscribe"
+
+  ECCODES_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/eccodes-2.21.0-3sdngaq'
+  NETCDF_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/clang-12.0.1-sandybridge/netcdf-c-4.8.0-z6r5guk'
+  PPM_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/clang-12.0.1-sandybridge/scales-ppm-1.0.7-5mhatgx'
+  YAXT_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/clang-12.0.1-sandybridge/yaxt-0.9.2.1-cj2nf5j'
+  UUID_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/libuuid-1.0.3-rm4kv2o'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  HDF5_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/clang-12.0.1-sandybridge/hdf5-1.10.7-4y54xnh'
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Sets variables for tests with NAG 6.2.6223.
+#
+init_nag626223 ()
+{
+  init_env
+  switch_for_module gcc/6.3.0 nag/6.2
+
+  CC=gcc
+  CXX=g++
+  FC=nagfor
+
+  export PATH="/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nag-6.2-sandybridge/mpich-3.4.2-fzsvtw2/bin:${PATH-}"
+  MPICC=mpicc
+  MPIFC=mpif90
+  MPI_LAUNCH="$(which mpirun)"
+
+  ECCODES_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/eccodes-2.21.0-3sdngaq'
+  NETCDF_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nag-6.2-sandybridge/netcdf-c-4.8.0-ogawg3w'
+  PPM_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nag-6.2-sandybridge/scales-ppm-1.0.7-5kdlwzv'
+  YAXT_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nag-6.2-sandybridge/yaxt-0.9.2.1-rhq2ysn'
+  UUID_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/gcc-6.3.0-sandybridge/libuuid-1.0.3-rm4kv2o'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  HDF5_ROOT='/data/mpi/sclab/sip/m300488/libcdi-ci-sw/nag-6.2-sandybridge/hdf5-1.10.7-pltg3k4'
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Accepts a path to a file containing the testsuite summary (either the
+# 'test-suite.log' or the standard output of the 'make check' command) and
+# checks whether all tests were run and passed.
+#
+check_all_tests_passed ()
+{
+  awk '/SKIP: /{
+         print "ERROR: the total number of tests is not equal to the number of passed tests";
+         exit 1;
+       }' $1 >&2
+}
+
+#
+# Checks whether the current working directory or any of its subdirectories
+# contain a file and fails with an error message if that is the case.
+#
+check_no_files_in_cwd ()
+{
+  cnfic_files=`find . -type f 2>/dev/null`
+  if test -n "$cnfic_files"; then
+    {
+      echo "ERROR: the current working directory contains undeleted files:"
+      echo "$cnfic_files"
+    } >&2
+    exit 1
+  fi
+}

.ci/bb/daint-cscs/test.all.cray

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_cray1203
+
+# Save time for the person running this script manually:
+if test "x${PE_NETCDF_MODULE_NAME}" = 'xcray-netcdf'; then
+  case $top_srcdir in
+    "${HOME}/"*)
+      echo "ERROR: parallel NetCDF4 tests are known to fail when CDI is built in the user home directory and linked against NetCDF that does not support MPI parallel invocations" >&2
+      exit 1
+  esac
+fi
+
+test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
+
+# The configure script does not check the 'lib64' subdirectory, therefore we
+# run it with '--with-eccodes' and the following flags. Note that fixing this
+# in the configure script might be tricky: the 'lib64' subdirectory should be
+# checked first but if it does not exist or does not contain the library, we
+# might end up linking to a library from the linker's default search path
+# (e.g. /usr/lib) instead of the one from "$with_eccodes/lib" because
+# "-L${with_eccodes}/lib64" would be ignored in that case:
+CPPFLAGS="-I${ECCODES_ROOT}/include"
+LDFLAGS="-L${ECCODES_ROOT}/lib64"
+
+"${top_srcdir}/configure" \
+--disable-maintainer-mode \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes \
+--with-netcdf \
+CC="${CC}" \
+CPPFLAGS="${CPPFLAGS}" \
+F77="${FC}" \
+FC="${FC}" \
+LDFLAGS="${LDFLAGS}" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig:${PKG_CONFIG_PATH}"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log

.ci/bb/daint-cscs/test.all.pgi

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_pgi2011
+
+# Save time for the person running this script manually:
+if test "x${PE_NETCDF_MODULE_NAME}" = 'xcray-netcdf'; then
+  case $top_srcdir in
+    "${HOME}/"*)
+      echo "ERROR: parallel NetCDF4 tests are known to fail when CDI is built in the user home directory and linked against NetCDF that does not support MPI parallel invocations" >&2
+      exit 1
+  esac
+fi
+
+test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
+
+# The configure script does not check the 'lib64' subdirectory, therefore we
+# run it with '--with-eccodes' and the following flags. Note that fixing this
+# in the configure script might be tricky: the 'lib64' subdirectory should be
+# checked first but if it does not exist or does not contain the library, we
+# might end up linking to a library from the linker's default search path
+# (e.g. /usr/lib) instead of the one from "$with_eccodes/lib" because
+# "-L${with_eccodes}/lib64" would be ignored in that case:
+CPPFLAGS="-I${ECCODES_ROOT}/include"
+LDFLAGS="-L${ECCODES_ROOT}/lib64"
+
+"${top_srcdir}/configure" \
+--disable-maintainer-mode \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes \
+--with-netcdf \
+CC="${CC}" \
+CFLAGS='-g -O1' \
+CPPFLAGS="${CPPFLAGS}" \
+F77="${FC}" \
+FC="${FC}" \
+FCFLAGS='-g -fPIC' \
+LDFLAGS="${LDFLAGS}" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig:${PKG_CONFIG_PATH}" \
+PTHREAD_LIBS='-lpthread'
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log

.ci/bb/daint-cscs/utils.sh

+#
+# Accepts a list of environment modules and loads them witch conflict
+# resolution.
+#
+switch_for_module ()
+{
+  for sfm_module in "$@"; do
+    sfm_module_full=
+    sfm_module_short=
+    case $sfm_module in
+      */*)
+        # The module is provided with the version part:
+        sfm_module_full=$sfm_module
+        sfm_module_short=`echo $sfm_module | sed 's%/[^/]*$%%'` ;;
+      *)
+        # Only the name of the module is provided, get the default version:
+        sfm_module_full=`module show $sfm_module 2>&1 | sed -n "s%^[^ \t]*/\\($sfm_module.*\\):%\\1%p"`
+        sfm_module_short=$sfm_module ;;
+    esac
+
+    # A space-separated list of modules that are already loaded:
+    sfm_loaded_full=`module -t list 2>&1 | tr '\n' ' ' | sed 's/^.*Modulefiles://' | sed 's/(default)//g'`
+
+    # Check whether the requested module if already loaded:
+    if test -n "$sfm_module_full"; then
+      case " $sfm_loaded_full " in
+        *" $sfm_module_full "*)
+          echo "module $sfm_module is already loaded"
+          continue ;;
+      esac
+    fi
+
+    # A list of modules in conflict:
+    sfm_conflicts=`module show $sfm_module 2>&1 | sed -n 's/^conflict\(.*\)/\1/p' | tr '\n\t' '  '`
+
+    # A list of loaded modules without version parts:
+    sfm_loaded_short=`echo "$sfm_loaded_full" | sed 's%\([^ ][^ ]*\)/[^ ]*%\1%g'`
+
+    # Add the short name of the module to the list of conflicts:
+    sfm_conflicts="$sfm_conflicts $sfm_module_short"
+
+    # A list of loaded modules that are in conflict with the requested module:
+    sfm_loaded_conflicts=
+    for sfm_conflict in $sfm_conflicts""; do
+      sfm_loaded_list=      
+      case $sfm_conflict in
+        */*)
+          # The conflict is specified with the version part:
+          sfm_loaded_list=$sfm_loaded_full ;;
+        *)
+          # The conflict is specified without the version part:
+          sfm_loaded_list=$sfm_loaded_short ;;
+      esac
+
+      # Check that the conflicted module is loaded:
+      case " $sfm_loaded_list " in
+        *" $sfm_conflict "*)
+          # The conflict is loaded, check whether it is already added to the
+          # list:
+          case " $sfm_loaded_conflicts " in
+            *" $sfm_conflict "*) ;;
+            *)
+              # The conflict is not in the list, append:
+              sfm_loaded_conflicts="$sfm_loaded_conflicts $sfm_conflict" ;;
+          esac
+        ;;
+      esac
+    done
+
+    # Calculate the number of modules that must be unloaded to before loading
+    # the requested module:
+    sfm_loaded_conflicts_count=`echo $sfm_loaded_conflicts | wc -w`
+
+    case $sfm_loaded_conflicts_count in
+      0)
+        # None of the conflicting modules is loaded:
+        sfm_cmd="module load $sfm_module" ;;
+      1)
+        # There is only one module that must be unloaded, use switch command:
+        sfm_cmd="module switch $sfm_loaded_conflicts $sfm_module" ;;
+      *)
+        # There is more than one module that must be unloaded, unload all of
+        # them and then load the requested one:
+        sfm_cmd="module unload $sfm_loaded_conflicts && module load $sfm_module" ;;
+    esac
+
+    echo "$sfm_cmd"
+    eval "$sfm_cmd"
+  done
+}
+
+#
+# Initializes the environment.
+#
+init_env ()
+{
+  AUTOMAKE_ROOT='/project/d56/libcdi-ci-sw/gcc-11.2.0-haswell/automake-1.16.3-46gthis'
+  export PATH="${AUTOMAKE_ROOT}/bin:${PATH-}"
+  # Tell the custom installation of Automake where the libtool macros are:
+  export ACLOCAL_PATH="/usr/share/aclocal:${ACLOCAL_PATH-}"
+}
+
+#
+# Sets variables for tests with Cray 12.0.3.
+#
+init_cray1203 ()
+{
+  init_env
+  switch_for_module craype PrgEnv-cray cce/12.0.3 cray-mpich
+
+  # Build and test against NetCDF that does not support MPI parallel invocations
+  # (parallel NetCDF4 tests are known to fail in this case when run from the
+  # user home directory on Daint):
+  switch_for_module cray-netcdf
+
+  # Uncomment the following line to test against MPI-capable NetCDF:
+  # switch_for_module cray-netcdf-hdf5parallel cray-hdf5-parallel
+
+  CC=cc
+  CXX=CC
+  FC=ftn
+  MPI_LAUNCH="$(which srun) -p cscsci -C gpu -A d56 -t 05:00"
+
+  ECCODES_ROOT='/project/d56/libcdi-ci-sw/cce-12.0.3-haswell/eccodes-2.24.2-o2a4fw3'
+  PPM_ROOT='/project/d56/libcdi-ci-sw/cce-12.0.3-haswell/scales-ppm-1.0.8-44zlrlu'
+  YAXT_ROOT='/project/d56/libcdi-ci-sw/cce-12.0.3-haswell/yaxt-0.9.2.1-enz3pcz'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib64:${PPM_ROOT}/lib:${YAXT_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Sets variables for tests with PGI 20.1.1.
+#
+init_pgi2011 ()
+{
+  init_env
+  # We use deprecated versions (the most recent compatible with PGI though) of
+  # the Cray packages and have to make sure that the default versions are
+  # unloaded (otherwise, we get various warnings and errors):
+  module unload cray-mpich cray-netcdf cray-netcdf-hdf5parallel cray-hdf5 cray-hdf5-parallel
+  switch_for_module craype PrgEnv-pgi/6.0.8 pgi/20.1.1 cray-mpich/7.7.15
+
+  # Build and test against NetCDF that does not support MPI parallel invocations
+  # (parallel NetCDF4 tests are known to fail in this case when run from the
+  # user home directory on Daint):
+  switch_for_module cray-netcdf/4.7.4.0 cray-hdf5/1.12.0.0
+
+  # Uncomment the following line to test against MPI-capable NetCDF:
+  # switch_for_module cray-netcdf-hdf5parallel/4.7.4.0 cray-hdf5-parallel/1.12.0.0
+
+  CC=cc
+  CXX=CC
+  FC=ftn
+  MPI_LAUNCH="$(which srun) -p cscsci -C gpu -A d56 -t 05:00"
+
+  ECCODES_ROOT='/project/d56/libcdi-ci-sw/pgi-20.1.1-haswell/eccodes-2.24.2-hwtl5nr'
+  PPM_ROOT='/project/d56/libcdi-ci-sw/pgi-20.1.1-haswell/scales-ppm-1.0.8-z2nxqya'
+  YAXT_ROOT='/project/d56/libcdi-ci-sw/pgi-20.1.1-haswell/yaxt-0.9.2.1-3orop7g'
+
+  # The deprecated versions of the Cray packages are not in the default linker
+  # search path:
+  export LD_LIBRARY_PATH="${MPICH_DIR}/lib:${NETCDF_DIR}/lib:${HDF5_DIR}/lib:${LD_LIBRARY_PATH-}"
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib64:${PPM_ROOT}/lib:${YAXT_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Accepts a path to a file containing the testsuite summary (either the
+# 'test-suite.log' or the standard output of the 'make check' command) and
+# checks whether all tests were run and passed.
+#
+check_all_tests_passed ()
+{
+  awk '/SKIP: /{
+         print "ERROR: the total number of tests is not equal to the number of passed tests";
+         exit 1;
+       }' $1 >&2
+}

.ci/bb/levante-dkrz/install_prerequisites.sh

+#!/bin/bash
+
+set -eu
+unset CDPATH
+
+module purge
+module load git
+
+install_dir='/work/mh0287/m300488/libcdi-ci-sw/install'
+work_dir="$(pwd)/build"
+make_cmd='make -j22'
+
+mkdir -p "${work_dir}" && cd "${work_dir}"
+
+# Get PPM 1.0.8:
+wget https://swprojects.dkrz.de/redmine/attachments/download/517/ppm-1.0.8.tar.gz
+tar xvf ppm-1.0.8.tar.gz
+ppm_src_dir="${work_dir}/ppm-1.0.8"
+ppm_name_tag='ppm-1.0.8'
+ppm_config_args='--enable-MPI --disable-netcdf --disable-hdf5 --disable-parmetis --disable-metis --disable-crypto'
+
+# Get YAXT 0.9.3:
+git clone --depth=1 -b release-0.9.3 https://gitlab.dkrz.de/dkrz-sw/yaxt.git
+yaxt_src_dir="${work_dir}/yaxt"
+yaxt_name_tag='yaxt-0.9.3'
+yaxt_config_args=''
+
+export CC='mpicc'
+export FC='mpif90'
+
+# Install for GCC 11.2.0:
+compiler_name_tag='gcc-11.2.0'
+module load openmpi/4.1.2-gcc-11.2.0
+
+# Install PPM:
+build_dir="${ppm_name_tag}-${compiler_name_tag}"
+mkdir "${build_dir}"
+( cd "${build_dir}"
+  "${ppm_src_dir}/configure" ${ppm_config_args} --prefix="${install_dir}/${ppm_name_tag}-${compiler_name_tag}"
+  $make_cmd
+  $make_cmd check
+  $make_cmd install )
+
+# Install YAXT:
+build_dir="${yaxt_name_tag}-${compiler_name_tag}"
+mkdir "${build_dir}"
+( cd "${build_dir}"
+  "${yaxt_src_dir}/configure" ${yaxt_config_args} --prefix="${install_dir}/${yaxt_name_tag}-${compiler_name_tag}"
+  $make_cmd
+  $make_cmd check
+  $make_cmd install )
+
+module unload openmpi/4.1.2-gcc-11.2.0
+
+# Install for Intel Classic 2021.5.0:
+compiler_name_tag='intel-classic-2021.5.0'
+module load openmpi/4.1.2-intel-2021.5.0
+
+# Install PPM:
+build_dir="${ppm_name_tag}-${compiler_name_tag}"
+mkdir "${build_dir}"
+( cd "${build_dir}"
+  "${ppm_src_dir}/configure" ${ppm_config_args} --prefix="${install_dir}/${ppm_name_tag}-${compiler_name_tag}"
+  $make_cmd
+  $make_cmd check
+  $make_cmd install )
+
+# Install YAXT:
+build_dir="${yaxt_name_tag}-${compiler_name_tag}"
+mkdir "${build_dir}"
+( cd "${build_dir}"
+  "${yaxt_src_dir}/configure" ${yaxt_config_args} --prefix="${install_dir}/${yaxt_name_tag}-${compiler_name_tag}"
+  $make_cmd
+  $make_cmd check
+  $make_cmd install )
+
+module unload openmpi/4.1.2-intel-2021.5.0

.ci/bb/levante-dkrz/test.all.gcc

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_gcc1120
+
+test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
+
+# The configure script does not check the 'lib64' subdirectory, therefore we
+# run it with '--with-eccodes' and the following flags. Note that fixing this
+# in the configure script might be tricky: the 'lib64' subdirectory should be
+# checked first but if it does not exist or does not contain the library, we
+# might end up linking to a library from the linker's default search path
+# (e.g. /usr/lib) instead of the one from "$with_eccodes/lib" because
+# "-L${with_eccodes}/lib64" would be ignored in that case:
+CPPFLAGS="-I${ECCODES_ROOT}/include"
+LDFLAGS="-L${ECCODES_ROOT}/lib64"
+
+# We expect --enable-cf-interface and --enable-ppm-dist-array to be set to
+# 'yes' automatically because of --enable-mpi. Function
+# 'check_all_tests_passed' that we run at the end makes sure that the options
+# have been enabled and the corresponding tests have not been skipped.
+"${top_srcdir}/configure" \
+--disable-maintainer-mode \
+--enable-iso-c-interface \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${MPICC}" \
+CPPFLAGS="${CPPFLAGS}" \
+F77="${MPIFC}" \
+FC="${MPIFC}" \
+LDFLAGS="${LDFLAGS}" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log

.ci/bb/levante-dkrz/test.all.intel-classic

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_intelclassic202150
+
+test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
+
+# Create a subdirectory for building and switch to it:
+mkdir build && cd build
+
+# The configure script does not check the 'lib64' subdirectory, therefore we
+# run it with '--with-eccodes' and the following flags. Note that fixing this
+# in the configure script might be tricky: the 'lib64' subdirectory should be
+# checked first but if it does not exist or does not contain the library, we
+# might end up linking to a library from the linker's default search path
+# (e.g. /usr/lib) instead of the one from "$with_eccodes/lib" because
+# "-L${with_eccodes}/lib64" would be ignored in that case:
+CPPFLAGS="-I${ECCODES_ROOT}/include"
+LDFLAGS="-L${ECCODES_ROOT}/lib64"
+
+"${top_srcdir}/configure" \
+--disable-maintainer-mode \
+--enable-cf-interface \
+--enable-iso-c-interface \
+--enable-mpi \
+--enable-option-checking=fatal \
+--with-eccodes \
+--with-netcdf="${NETCDF_ROOT}" \
+CC="${MPICC}" \
+CPPFLAGS="${CPPFLAGS}" \
+F77="${MPIFC}" \
+FC="${MPIFC}" \
+LDFLAGS="${LDFLAGS}" \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
+
+make -j8
+
+make -j8 check | tee tests/test-suite.log
+
+check_all_tests_passed tests/test-suite.log
+
+make -j8 distclean
+
+check_no_files_in_cwd

.ci/bb/levante-dkrz/test.icon-pio.intel-classic

+#!/bin/bash
+
+echo "WARNING: the current version of CDI-PIO is incompatible with the build system if ICON" >&2
+exit 0

.ci/bb/levante-dkrz/test.icon.gcc

+#!/bin/bash
+
+set -eu
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../../.."; pwd)
+
+. "${script_dir}/utils.sh"
+init_gcc1120
+
+# The following compiler flags are used by the respective ICON configure
+# wrapper. They are not set into stone and can be changed if needed. It is just
+# important to keep them the same as in the wrapper.
+CFLAGS='-g -gdwarf-4 -march=native -mpc64 -O2'
+FCFLAGS='-fmodule-private -fimplicit-none -fmax-identifier-length=63 -Wall -Wcharacter-truncation -Wconversion -Wunderflow -Wunused-parameter -Wno-surprising -fall-intrinsics -g -march=native -mpc64 -fbacktrace -fbounds-check -fstack-protector-all -finit-real=nan -finit-integer=-2147483648 -finit-character=127 -O2 -std=f2008'
+
+test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
+
+"${top_srcdir}/configure" \
+--disable-cdi-app \
+--disable-maintainer-mode \
+--disable-shared \
+--enable-cf-interface=no \
+--enable-cgribex \
+--enable-grib \
+--enable-iso-c-interface \
+--enable-mpi=no \
+--enable-ppm-dist-array=no \
+--enable-silent-rules=no \
+--enable-static \
+--with-eccodes=yes \
+--with-netcdf \
+--with-on-demand-check-programs \
+--without-example-programs \
+--without-grib_api \
+--without-szlib \
+--without-threads \
+BUILD_CC= \
+BUILD_CFLAGS= \
+BUILD_CXX= \
+BUILD_F77= \
+BUILD_FC= \
+BUILD_FCFLAGS= \
+BUILD_LDFLAGS= \
+BUILD_LIBS= \
+BUILD_MPI_C_LIB= \
+BUILD_MPI_FC_LIB= \
+CC="${MPICC}" \
+CFLAGS="${CFLAGS}" \
+CPPFLAGS="-I${NETCDF_ROOT}/include -I${ECCODES_ROOT}/include" \
+CXX=no \
+F77=no \
+FC="${MPIFC}" \
+FCFLAGS="${FCFLAGS}" \
+LDFLAGS="-L${NETCDF_ROOT}/lib -L${ECCODES_ROOT}/lib64" \
+LIBS='-leccodes -lnetcdf' \
+MPIROOT= \
+MPI_C_INCLUDE= \
+MPI_C_LIB= \
+MPI_FC_LIB= \
+MPI_FC_MOD= \
+MPI_LAUNCH="${MPI_LAUNCH}" \
+PKG_CONFIG= \
+PPM_CORE_C_INCLUDE= \
+PPM_CORE_C_LIB= \
+YAXT_C_INCLUDE= \
+YAXT_C_LIB= \
+YAXT_FC_LIB= \
+YAXT_FC_MOD= \
+ac_cv_func_uuid_create=no \
+ac_cv_lib_uuid_uuid_generate=no \
+acx_cv_have_libnc_dap=no \
+acx_cv_have_nc4hdf5=no \
+acx_cv_have_netcdf2=yes \
+acx_cv_have_netcdf4=yes \
+acx_cv_have_pnetcdf=no
+
+make -j8
+
+make -j8 check

.ci/bb/levante-dkrz/utils.sh

+#
+# Accepts a list of environment modules and loads them witch conflict
+# resolution.
+#
+switch_for_module ()
+{
+  for sfm_module in "$@"; do
+    sfm_module_full=
+    sfm_module_short=
+    case $sfm_module in
+      */*)
+        # The module is provided with the version part:
+        sfm_module_full=$sfm_module
+        sfm_module_short=`echo $sfm_module | sed 's%/[^/]*$%%'` ;;
+      *)
+        # Only the name of the module is provided, get the default version:
+        sfm_module_full=`module show $sfm_module 2>&1 | sed -n "s%^[^ \t]*/\\($sfm_module.*\\):%\\1%p"`
+        sfm_module_short=$sfm_module ;;
+    esac
+
+    # A space-separated list of modules that are already loaded:
+    sfm_loaded_full=`module -t list 2>&1 | tr '\n' ' ' | sed 's/^.*Modulefiles://' | sed 's/(default)//g'`
+
+    # Check whether the requested module if already loaded:
+    if test -n "$sfm_module_full"; then
+      case " $sfm_loaded_full " in
+        *" $sfm_module_full "*)
+          echo "module $sfm_module is already loaded"
+          continue ;;
+      esac
+    fi
+
+    # A list of modules in conflict:
+    sfm_conflicts=`module show $sfm_module 2>&1 | sed -n 's/^conflict\(.*\)/\1/p' | tr '\n\t' '  '`
+
+    # A list of loaded modules without version parts:
+    sfm_loaded_short=`echo "$sfm_loaded_full" | sed 's%\([^ ][^ ]*\)/[^ ]*%\1%g'`
+
+    # Add the short name of the module to the list of conflicts:
+    sfm_conflicts="$sfm_conflicts $sfm_module_short"
+
+    # A list of loaded modules that are in conflict with the requested module:
+    sfm_loaded_conflicts=
+    for sfm_conflict in $sfm_conflicts""; do
+      sfm_loaded_list=      
+      case $sfm_conflict in
+        */*)
+          # The conflict is specified with the version part:
+          sfm_loaded_list=$sfm_loaded_full ;;
+        *)
+          # The conflict is specified without the version part:
+          sfm_loaded_list=$sfm_loaded_short ;;
+      esac
+
+      # Check that the conflicted module is loaded:
+      case " $sfm_loaded_list " in
+        *" $sfm_conflict "*)
+          # The conflict is loaded, check whether it is already added to the
+          # list:
+          case " $sfm_loaded_conflicts " in
+            *" $sfm_conflict "*) ;;
+            *)
+              # The conflict is not in the list, append:
+              sfm_loaded_conflicts="$sfm_loaded_conflicts $sfm_conflict" ;;
+          esac
+        ;;
+      esac
+    done
+
+    # Calculate the number of modules that must be unloaded to before loading
+    # the requested module:
+    sfm_loaded_conflicts_count=`echo $sfm_loaded_conflicts | wc -w`
+
+    case $sfm_loaded_conflicts_count in
+      0)
+        # None of the conflicting modules is loaded:
+        sfm_cmd="module load $sfm_module" ;;
+      1)
+        # There is only one module that must be unloaded, use switch command:
+        sfm_cmd="module switch $sfm_loaded_conflicts $sfm_module" ;;
+      *)
+        # There is more than one module that must be unloaded, unload all of
+        # them and then load the requested one:
+        sfm_cmd="module unload $sfm_loaded_conflicts && module load $sfm_module" ;;
+    esac
+
+    echo "$sfm_cmd"
+    eval "$sfm_cmd"
+  done
+}
+
+#
+# Initializes the environment.
+#
+init_env ()
+{
+  :
+}
+
+#
+# Sets variables for tests with GCC 11.2.0.
+#
+init_gcc1120 ()
+{
+  init_env
+  switch_for_module gcc/11.2.0-gcc-11.2.0 openmpi/4.1.2-gcc-11.2.0
+
+  CC=gcc
+  CXX=g++
+  FC=gfortran
+  MPICC=mpicc
+  MPIFC=mpif90
+  MPI_LAUNCH="$(which mpirun)"
+
+  ECCODES_ROOT='/sw/spack-levante/eccodes-2.21.0-4ywkk4'
+  NETCDF_ROOT='/sw/spack-levante/netcdf-c-4.8.1-6qheqr'
+  PPM_ROOT='/work/mh0287/m300488/libcdi-ci-sw/install/ppm-1.0.8-gcc-11.2.0'
+  YAXT_ROOT='/work/mh0287/m300488/libcdi-ci-sw/install/yaxt-0.9.3-gcc-11.2.0'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib64:${NETCDF_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Sets variables for tests with Intel Classic 2021.5.0.
+#
+init_intelclassic202150 ()
+{
+  init_env
+  # Try to make sure that the compiler works with the system gcc:
+  module unload gcc
+  # For whatever reason, Intel Classic 2021.5.0 is enabled with
+  # intel-oneapi-compilers/2022.0.1-gcc-11.2.0:
+  switch_for_module intel-oneapi-compilers/2022.0.1-gcc-11.2.0 openmpi/4.1.2-intel-2021.5.0
+
+  AR=xiar
+  CC=icc
+  CXX=icpc
+  FC=ifort
+  MPICC=mpicc
+  MPIFC=mpif90
+  MPI_LAUNCH="$(which mpirun)"
+
+  ECCODES_ROOT='/sw/spack-levante/eccodes-2.21.0-3ehkbb'
+  NETCDF_ROOT='/sw/spack-levante/netcdf-c-4.8.1-2k3cmu'
+  PPM_ROOT='/work/mh0287/m300488/libcdi-ci-sw/install/ppm-1.0.8-intel-classic-2021.5.0'
+  YAXT_ROOT='/work/mh0287/m300488/libcdi-ci-sw/install/yaxt-0.9.3-intel-classic-2021.5.0'
+
+  # Here we fix a never-ending story with Libtool overlinkning, absence of
+  # '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
+  export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib64:${NETCDF_ROOT}/lib:${LD_LIBRARY_PATH-}"
+}
+
+#
+# Accepts a path to a file containing the testsuite summary (either the
+# 'test-suite.log' or the standard output of the 'make check' command) and
+# checks whether all tests were run and passed.
+#
+check_all_tests_passed ()
+{
+  awk '/SKIP: /{
+         print "ERROR: the total number of tests is not equal to the number of passed tests";
+         exit 1;
+       }' $1 >&2
+}
+
+#
+# Checks whether the current working directory or any of its subdirectories
+# contain a file and fails with an error message if that is the case.
+#
+check_no_files_in_cwd ()
+{
+  cnfic_files=`find . -type f 2>/dev/null`
+  if test -n "$cnfic_files"; then
+    {
+      echo "ERROR: the current working directory contains undeleted files:"
+      echo "$cnfic_files"
+    } >&2
+    exit 1
+  fi
+}

.ci/bb/run_all.sh

+#!/bin/bash
+
+set -eu
+set -o pipefail
+
+script_dir=$(cd "$(dirname "$0")"; pwd)
+top_srcdir=$(cd "${script_dir}/../.."; pwd)
+
+test_environment='unknown'
+case $(uname -s) in
+  Linux)
+    node_name=$(uname -n)
+    case $(host "${node_name}") in
+      mpipc*.mpimet.mpg.de\ * | \
+      breeze*.mpimet.mpg.de\ *)
+        test_environment='breeze-mpim' ;;
+      levante*.atos.local\ *)
+        test_environment='levante-dkrz' ;;
+      daint*.login.cscs.ch\ *)
+        test_environment='daint-cscs' ;;
+    esac
+esac
+
+test "x${test_environment}" != 'xunknown' || {
+  echo 'ERROR: unknown test environment' >&2
+  exit 1
+}
+
+cd "${top_srcdir}"
+
+git update-index -q --refresh || {
+  echo "ERROR: failed to update git index in '${top_srcdir}'" >&2
+  exit 1
+}
+
+git diff-files --quiet || {
+  echo "ERROR: '${top_srcdir}' has unstaged changes" >&2
+  exit 1
+}
+
+untracked_files=`git ls-files --others` || {
+  echo "ERROR: failed to get list of untracked files in '${top_srcdir}'" >&2
+  exit 1
+}
+if test -n "${untracked_files}"; then
+  {
+    echo "ERROR: '${top_srcdir}' has untracked files:" >&2
+    echo "${untracked_files}" >&2
+  } >&2
+  exit 1
+fi
+
+echo "Running tests for '${test_environment}'"
+
+for script in $(find "${script_dir}/${test_environment}" -type f -name 'test.*' -executable); do
+  echo "Running '${script}'"
+  "${script}"
+  git clean -fdx
+  git checkout .
+done

ChangeLog

+2022-11-05  Uwe Schulzweida
+
+	* NetCDF output: added compression support for data on GRID_GENERIC
+
+2022-10-19  Uwe Schulzweida
+
+	* Replaced CDI function vlistDefVarExtra() by cdiDefKeyString() with CDI_KEY_CHUNKS
+	* Replaced CDI function vlistInqVarExtra() by cdiInqKeyString() with CDI_KEY_CHUNKS
+	* Replaced CDI function vlistDefVarScalefactor() by cdiDefKeyFloat() with CDI_KEY_SCALEFACTOR
+	* Replaced CDI function vlistInqVarScalefactor() by cdiDefKeyFloat () with CDI_KEY_SCALEFACTOR
+	* Replaced CDI function vlistDefVarAddoffset() by cdiDefKeyFloat () with CDI_KEY_ADDOFFSET
+	* Replaced CDI function vlistInqVarAddoffset() by cdiDefKeyFloat () with CDI_KEY_ADDOFFSET
+
+2022-10-17  Uwe Schulzweida
+
+        * Added environment variable CDI_SHUFFLE to set shuffle option to NetCDF4 deflation compression
+
+2022-10-16  Uwe Schulzweida
+
+	* Improved read performance of temporal chunked NetCDF4 data
+        * Added environment variable CDI_CHUNK_CACHE to set the NetCDF4 chunk cache size
+        * Added environment variable CDI_CHUNK_CACHE_MAX to set the maximum chunk cache size
+
+2022-10-14  Uwe Schulzweida
+
+	* NetCDF: reading of lower time bounds is wrong since 2.0.6 (bug fix)
+
+2022-10-06  Uwe Schulzweida
+
+	* Version 2.1.0 released
+
+2022-10-05  Uwe Schulzweida
+
+	* Added CDI_PROJ_HEALPIX
+
+2022-10-04  Uwe Schulzweida
+
+	* cdi_encode_timeval: added support for TUNIT_SECOND
+
+2022-09-30  Uwe Schulzweida
+
+	* install cmake files in <install>/lib/cmake/cdi
+
 2022-08-12  Uwe Schulzweida
 
 	* added CDI_KEY_CHUNKTYPE and CDI_KEY_CHUNKSIZE
@@ -56,7 +99,7 @@
 
 2022-01-28  Uwe Schulzweida
 
-	* cdf_read_coordinates: check that bounds have only 2 dimensions [Bug #10575]
+	* cdf_read_coordinates: check that grid cell bounds have only 2 dimensions [Bug #10575]
 	* gribIterator::gridGenerate: copy CDI_KEY_UUID (bug fix)
 
 2022-01-12  Uwe Schulzweida

NEWS

 CDI NEWS
 --------
 
-Version 2.1.0 (11 October 2021):
+Version 2.2.0 (6 October 2023):
+
+   New features:
+     * Improved read performance of temporal chunked NetCDF4 data
+   Fixed bugs:
+
+Version 2.1.0 (6 October 2022):
 
    New features:
      * Added support for NCZarr
      * Set number of significant bits used for NetCDF 4.9.0 bit-roundung: vlistDefVarNSB()/vlistInqVarNSB()
      * Added support for milli seconds
      * Changed DateType back to int
+     * Made CDI compatible to revision 1.8.3 used in ICON
    Fixed bugs:
+     * recalculate optimal chunk_size if gridsize is > chunk_size_lim
+     * ecCodes encode: fix problem with startStep for step type MIN/MAX
+     * GRIB read: recalculate start date/time for every record and timestep
+     * changed chunk_size_lim from 1073741823 to 16777216
      * compareXYvals failed for unstructured grids (segmentation fault) [Bug #10632]
-     * cdf_read_coordinates: check that bounds have only 2 dimensions [Bug #10575]
+     * cdf_read_coordinates: check that grid cell bounds have only 2 dimensions [Bug #10575]
 
 Version 2.0.0 (11 October 2021):
 

app/cdi.c

@@ -78,8 +78,8 @@ static int datamode = DP_MODE;
 static void
 version(void)
 {
-  int filetypes[] = { CDI_FILETYPE_SRV, CDI_FILETYPE_EXT, CDI_FILETYPE_IEG, CDI_FILETYPE_GRB,  CDI_FILETYPE_GRB2,
-                      CDI_FILETYPE_NC,  CDI_FILETYPE_NC2, CDI_FILETYPE_NC4, CDI_FILETYPE_NC4C, CDI_FILETYPE_NC5, CDI_FILETYPE_NCZARR };
+  int filetypes[] = { CDI_FILETYPE_SRV, CDI_FILETYPE_EXT, CDI_FILETYPE_IEG,  CDI_FILETYPE_GRB, CDI_FILETYPE_GRB2,  CDI_FILETYPE_NC,
+                      CDI_FILETYPE_NC2, CDI_FILETYPE_NC4, CDI_FILETYPE_NC4C, CDI_FILETYPE_NC5, CDI_FILETYPE_NCZARR };
   const char *typenames[] = { "srv", "ext", "ieg", "grb", "grb2", "nc", "nc2", "nc4", "nc4c", "nc5", "nczarr" };
 
   fprintf(stderr, "CDI version 2.1\n");
@@ -497,8 +497,8 @@ printShortinfo(int streamID, int vlistID, int vardis)
             {
               const CdiDateTime dt = taxisInqRdatetime(taxisID);
 
-              fprintf(stdout, "     RefTime = %4.4d-%2.2d-%2.2d %2.2d:%2.2d:%2.2d",
-                      dt.date.year, dt.date.month, dt.date.day, dt.time.hour, dt.time.minute, dt.time.second);
+              fprintf(stdout, "     RefTime = %4.4d-%2.2d-%2.2d %2.2d:%2.2d:%2.2d", dt.date.year, dt.date.month, dt.date.day,
+                      dt.time.hour, dt.time.minute, dt.time.second);
               if (dt.time.ms) fprintf(stdout, ".%d", dt.time.ms);
 
               const int tunits = taxisInqTunit(taxisID);
@@ -560,8 +560,9 @@ setDefaultDataType(char *datatypestr)
           else
             {
               fprintf(stderr, "Unsupported number of bits %d!\n", nbits);
-              fprintf(stderr,
-                      "Use I8/I16/I32/F32/F64 for nc/nc2/nc4/nc4c/nc5/nczarr; F32/F64 for grb2/srv/ext/ieg; P1 - P24 for grb/grb2.\n");
+              fprintf(
+                  stderr,
+                  "Use I8/I16/I32/F32/F64 for nc/nc2/nc4/nc4c/nc5/nczarr; F32/F64 for grb2/srv/ext/ieg; P1 - P24 for grb/grb2.\n");
               exit(EXIT_FAILURE);
             }
         }

app/printinfo.c

@@ -9,15 +9,14 @@
 
 #include "printinfo.h"
 
-
 #define DATE_FORMAT "%5.4d-%2.2d-%2.2d"
 #define TIME_FORMAT "%2.2d:%2.2d:%2.2d"
 
 void
 datetime2str(CdiDateTime dt, char *datetimestr, int maxlen)
 {
-  snprintf(datetimestr, maxlen, DATE_FORMAT "T" TIME_FORMAT,
-           dt.date.year, dt.date.month, dt.date.day, dt.time.hour, dt.time.minute, dt.time.second);
+  snprintf(datetimestr, maxlen, DATE_FORMAT "T" TIME_FORMAT, dt.date.year, dt.date.month, dt.date.day, dt.time.hour, dt.time.minute,
+           dt.time.second);
 }
 
 void
@@ -44,7 +43,8 @@ time2str(CdiTime time, char *timestr, int maxlen)
     }
 
   if (msDigitsNum)
-    snprintf(timestr, maxlen, "%2.2d:%2.2d:%0*.*f", time.hour, time.minute, msDigitsNum + 3, msDigitsNum, time.second + time.ms / 1000.0);
+    snprintf(timestr, maxlen, "%2.2d:%2.2d:%0*.*f", time.hour, time.minute, msDigitsNum + 3, msDigitsNum,
+             time.second + time.ms / 1000.0);
   else
     snprintf(timestr, maxlen, TIME_FORMAT, time.hour, time.minute, time.second);
 }

config/default

@@ -42,7 +42,7 @@ case "${HOSTNAME}" in
 	            CC=icc CFLAGS="-g -D_REENTRANT -Wall -Wwrite-strings -O3 -march=native -fp-model source"
 	;;
     bailung*|d133*|d134*)
-	${CONFPATH}configure --prefix=$HOME/local \
+	${CONFPATH}configure --prefix=$HOME/local/cdi \
                     --enable-maintainer-mode \
                     --enable-iso-c-interface \
                     --enable-swig \
@@ -69,7 +69,7 @@ case "${HOSTNAME}" in
                  --with-fdb5=$HOME/src/fdb \
                  --with-eccodes=$HOME/local/eccodes-2.22.0 \
                  --with-netcdf=$HOME/local/netcdf-c-4.9.0"
-        PREFIX="--prefix=$HOME/local"
+        PREFIX="--prefix=$HOME/local/cdi"
         LD_ADD="-Wl,-rpath,$HOME/local/eccodes-2.22.0/lib -Wl,-rpath,$HOME/src/fdb/lib"
         if  test "$COMP" = clang ; then
           ${CONFPATH}configure $CONFIG_OPTS $PREFIX $CDILIBS LDFLAGS="$LD_ADD $LDFLAGS" \