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Commit 8bb6ae45 authored by Sergey Kosukhin's avatar Sergey Kosukhin
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Remove obsolete CI script for Mistral.

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1 merge request!14Draft: K202125/cdi 1.8.x pio merge followup
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.ci/bb/mistral-dkrz/test.all.pgi-19.9.0 deleted 100755 → 0
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− 48
View file @ c9cebb15
#!/bin/bash
set -eu
set -o pipefail
script_dir=$(cd "$(dirname "$0")"; pwd)
top_srcdir=$(cd "${script_dir}/../../.."; pwd)
. "${script_dir}/utils.sh"
init_pgi1990
test -f "${top_srcdir}/configure" || "${top_srcdir}/autogen.sh"
# The configure script does not check the 'lib64' subdirectory, therefore we
# run it with '--with-eccodes' and the following flags. Note that fixing this
# in the configure script might be tricky: the 'lib64' subdirectory should be
# checked first but if it does not exist or does not contain the library, we
# might end up linking to a library from the linker's default search path
# (e.g. /usr/lib) instead of the one from "$with_eccodes/lib" because
# "-L${with_eccodes}/lib64" would be ignored in that case:
CPPFLAGS="-I${ECCODES_ROOT}/include"
LDFLAGS="-L${ECCODES_ROOT}/lib64"
# There is no libnetcdf.la file, therefore Libtool does not know how to link
# to the right library:
LDFLAGS+=" -L${HDF5_ROOT}/lib"
"${top_srcdir}/configure" \
--disable-maintainer-mode \
--enable-cf-interface \
--enable-iso-c-interface \
--enable-mpi \
--enable-option-checking=fatal \
--enable-ppm-dist-array \
--with-eccodes \
--with-netcdf="${NETCDF_ROOT}" \
CC="${MPICC}" \
CPPFLAGS="${CPPFLAGS}" \
FC="${MPIFC}" \
LDFLAGS="${LDFLAGS}" \
MPI_LAUNCH="${MPI_LAUNCH}" \
PKG_CONFIG_PATH="${YAXT_ROOT}/lib/pkgconfig:${PPM_ROOT}/lib/pkgconfig"
make -j8
make -j8 check || { cat tests/test-suite.log; exit 1; }
check_all_tests_passed tests/test-suite.log
.ci/bb/mistral-dkrz/utils.sh deleted 100644 → 0
+ 0
− 238
View file @ c9cebb15
#
# Accepts a list of environment modules and loads them witch conflict
# resolution.
#
switch_for_module ()
{
for sfm_module in "$@"; do
sfm_module_full=
sfm_module_short=
case $sfm_module in
*/*)
# The module is provided with the version part:
sfm_module_full=$sfm_module
sfm_module_short=`echo $sfm_module | sed 's%/[^/]*$%%'` ;;
*)
# Only the name of the module is provided, get the default version:
sfm_module_full=`module show $sfm_module 2>&1 | sed -n "s%^[^ \t]*/\\($sfm_module.*\\):%\\1%p"`
sfm_module_short=$sfm_module ;;
esac
# A space-separated list of modules that are already loaded:
sfm_loaded_full=`module -t list 2>&1 | tr '\n' ' ' | sed 's/^.*Modulefiles://' | sed 's/(default)//g'`
# Check whether the requested module if already loaded:
if test -n "$sfm_module_full"; then
case " $sfm_loaded_full " in
*" $sfm_module_full "*)
echo "module $sfm_module is already loaded"
continue ;;
esac
fi
# A list of modules in conflict:
sfm_conflicts=`module show $sfm_module 2>&1 | sed -n 's/^conflict\(.*\)/\1/p' | tr '\n\t' ' '`
# A list of loaded modules without version parts:
sfm_loaded_short=`echo "$sfm_loaded_full" | sed 's%\([^ ][^ ]*\)/[^ ]*%\1%g'`
# Add the short name of the module to the list of conflicts:
sfm_conflicts="$sfm_conflicts $sfm_module_short"
# A list of loaded modules that are in conflict with the requested module:
sfm_loaded_conflicts=
for sfm_conflict in $sfm_conflicts""; do
sfm_loaded_list=
case $sfm_conflict in
*/*)
# The conflict is specified with the version part:
sfm_loaded_list=$sfm_loaded_full ;;
*)
# The conflict is specified without the version part:
sfm_loaded_list=$sfm_loaded_short ;;
esac
# Check that the conflicted module is loaded:
case " $sfm_loaded_list " in
*" $sfm_conflict "*)
# The conflict is loaded, check whether it is already added to the
# list:
case " $sfm_loaded_conflicts " in
*" $sfm_conflict "*) ;;
*)
# The conflict is not in the list, append:
sfm_loaded_conflicts="$sfm_loaded_conflicts $sfm_conflict" ;;
esac
;;
esac
done
# Calculate the number of modules that must be unloaded to before loading
# the requested module:
sfm_loaded_conflicts_count=`echo $sfm_loaded_conflicts | wc -w`
case $sfm_loaded_conflicts_count in
0)
# None of the conflicting modules is loaded:
sfm_cmd="module load $sfm_module" ;;
1)
# There is only one module that must be unloaded, use switch command:
sfm_cmd="module switch $sfm_loaded_conflicts $sfm_module" ;;
*)
# There is more than one module that must be unloaded, unload all of
# them and then load the requested one:
sfm_cmd="module unload $sfm_loaded_conflicts && module load $sfm_module" ;;
esac
echo "$sfm_cmd"
eval "$sfm_cmd"
done
}
#
# Initializes the environment.
#
init_env ()
{
saved_set=$-
set +eu
. /sw/rhel6-x64/etc/profile.mistral
module use /sw/spack-rhel6/spack/modules/linux-rhel6-haswell
set -${saved_set}
switch_for_module automake libtool autoconf
}
#
# Sets variables for tests with GCC 6.4.0.
#
init_gcc640 ()
{
init_env
switch_for_module gcc/6.4.0 openmpi/2.0.2p1_hpcx-gcc64
CC=gcc
CXX=g++
FC=gfortran
MPICC=mpicc
MPIFC=mpif90
MPI_LAUNCH="$(which mpirun)"
GRIBAPI_ROOT='/sw/rhel6-x64/grib_api/grib_api-1.15.0-gcc48'
NETCDF_ROOT='/sw/rhel6-x64/netcdf/netcdf_c-4.4.0-parallel-openmpi2-gcc64'
PPM_ROOT='/work/mh0287/m300488/cdi-pio-sw/ppm-1.0.6-gcc64'
YAXT_ROOT='/work/mh0287/m300488/cdi-pio-sw/yaxt-0.9.0-gcc64'
}
#
# Sets variables for tests with Intel 17.0.6.
#
init_intel1706 ()
{
init_env
switch_for_module gcc/6.4.0 intel/17.0.6 openmpi/2.0.2p1_hpcx-intel14
CC=icc
CXX=icpc
FC=ifort
MPICC=mpicc
MPIFC=mpif90
MPI_LAUNCH="$(which mpirun)"
GRIBAPI_ROOT='/sw/rhel6-x64/grib_api/grib_api-1.15.0-gcc48'
NETCDF_ROOT='/sw/rhel6-x64/netcdf/netcdf_c-4.4.0-parallel-openmpi2-intel14'
PPM_ROOT='/work/mh0287/m300488/cdi-pio-sw/ppm-1.0.6-intel17'
YAXT_ROOT='/work/mh0287/m300488/cdi-pio-sw/yaxt-0.9.0-intel17'
# Here we fix a never-ending story with Libtool overlinkning, absence of
# '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
PNETCDF_ROOT='/sw/rhel6-x64/netcdf/parallel_netcdf-1.6.1-openmpi2-intel14'
export LD_LIBRARY_PATH="${PNETCDF_ROOT}/lib:${LD_LIBRARY_PATH-}"
}
#
# Sets variables for tests with NAG 6.2.6223.
#
init_nag626223 ()
{
init_env
switch_for_module gcc/6.4.0 nag/6.2
# There is no environment module for MPICH:
MPICH_ROOT='/mnt/lustre01/work/k20200/sw/spack/opt/spack/linux-rhel6-x86_64/nag-6.2/mpich-3.2.1-zxw7jhgz7qk4kim5jtziybfzigtiauxj'
export PATH="${MPICH_ROOT}/bin:${PATH-}"
CC=gcc
CXX=g++
FC=nagfor
MPICC=mpicc
MPIFC=mpif90
MPI_LAUNCH="$(which mpirun)"
ECCODES_ROOT='/mnt/lustre01/work/k20200/sw/spack/opt/spack/linux-rhel6-x86_64/nag-6.2/eccodes-2.5.0-givay23bqhgzreuk5um2wtjsumebwbt4'
NETCDF_ROOT='/mnt/lustre01/work/k20200/sw/spack/opt/spack/linux-rhel6-x86_64/gcc-8.3.0-works/netcdf-4.7.0-eftv5u36ogb5awbb27hffiiv5rib4kqj'
PPM_ROOT='/work/mh0287/m300488/cdi-pio-sw/ppm-1.0.6-nag62'
YAXT_ROOT='/work/mh0287/m300488/cdi-pio-sw/yaxt-0.9.0-nag62'
# Here we fix a never-ending story with Libtool overlinkning, absence of
# '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib:${LD_LIBRARY_PATH-}"
}
#
# Sets variables for tests with PGI 19.9.0.
#
init_pgi1990 ()
{
init_env
switch_for_module pgi/19.9-spack openmpi/2.0.2p2-pgi-19.9
CC=pgcc
CXX=pgc++
FC=pgfortran
MPICC=mpicc
MPIFC=mpif90
MPI_LAUNCH="$(which orterun)"
ECCODES_ROOT='/sw/spack-rhel6/eccodes-2.19.1-cqlkd7'
NETCDF_ROOT='/sw/spack-rhel6/netcdf-c-4.7.4-22ody2'
PPM_ROOT='/work/mh0287/m300488/cdi-pio-sw/ppm-1.0.6-pgi19'
YAXT_ROOT='/work/mh0287/m300488/cdi-pio-sw/yaxt-0.9.0-pgi19'
# Here we fix a never-ending story with Libtool overlinkning, absence of
# '*.la' files when they could help, and '-Wl,--disable/enable-new-dtags':
HDF5_ROOT='/sw/spack-rhel6/hdf5-1.10.7-xynrbi'
export LD_LIBRARY_PATH="${ECCODES_ROOT}/lib64:${NETCDF_ROOT}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH-}"
}
#
# Accepts a path to a file containing the testsuite summary (either the
# 'test-suite.log' or the standard output of the 'make check' command) and
# checks whether all tests were run and passed.
#
check_all_tests_passed ()
{
awk '/^# TOTAL: /{ total=$3 };
/^# PASS: /{ pass=$3 };
END {
if ( total == "" || total != pass ) {
print "ERROR: the total number of tests is not equal to the number of passed tests";
exit 1;
}
}' $1 >&2
}
#
# Checks whether the current working directory or any of its subdirectories
# contain a file and fails with an error message if that is the case.
#
check_no_files_in_cwd ()
{
cnfic_files=`find . -type f 2>/dev/null`
if test -n "$cnfic_files"; then
{
echo "ERROR: the current working directory contains undeleted files:"
echo "$cnfic_files"
} >&2
exit 1
fi
}
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