Add automatically generated files.

Makefile.in

aclocal.m4

app/Makefile.in

config/compile

config/config.guess

config/config.sub

config/depcomp

config/install-sh

config/ltmain.sh

config/missing

config/py-compile

config/test-driver

configure

doc/cdi_cman.pdf

doc/cdi_fman.pdf

examples/Makefile.in

examples/pio/Makefile.in

interfaces/Makefile.in

interfaces/python/Cdi.py

interfaces/python/cdi_wrapper.cpp