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Sofiane Bendoukha
ssh_scripts
Commits
257a7389
Commit
257a7389
authored
4 years ago
by
Sofiane Bendoukha
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Added first support for singularity.
parent
6c86102e
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start-jupyter
+16
-3
16 additions, 3 deletions
start-jupyter
with
16 additions
and
3 deletions
start-jupyter
+
16
−
3
View file @
257a7389
...
...
@@ -93,6 +93,11 @@ SJ_INCFILE=""
# where jupyter is running need a shared home file system.
readonly
SJ_FRONTEND_HOST
=
"mistralpp.dkrz.de"
# Image
#
# start the jupyter notebook in a singularity container from a given
# image name.
SJ_IMAGE
=
""
function
clean_up
()
{
trap
- ERR EXIT
...
...
@@ -136,13 +141,14 @@ Available values for OPTION include:
-p partition run job on partition
-t time job runtime
-u username use username for login
-s image singularity image
EOF
}
function
parse_options
()
{
local
option
while
getopts
'A:c:di:n:p:t:u:'
option
;
do
while
getopts
'A:c:di:n:p:t:u:
s:
'
option
;
do
case
${
option
}
in
A
)
SJ_ACCTCODE
=
"
$OPTARG
"
;;
...
...
@@ -160,6 +166,8 @@ function parse_options () {
;;
u
)
SJ_USERNAME
=
"
$OPTARG
"
;;
s
)
SJ_IMAGE
=
"
$OPTARG
"
;;
?
)
usage
exit
1
;;
...
...
@@ -173,6 +181,7 @@ function parse_options () {
readonly
SJ_PARTITION
readonly
SJ_RUNTIME
readonly
SJ_USERNAME
readonly
SJ_IMAGE
}
function
ssh_frontend
()
{
...
...
@@ -206,16 +215,19 @@ function which_jupyter() {
local
which
which
=
"
$(
source_incfile
"which jupyter"
)
"
ssh_frontend
"/bin/bash -lc
\"
${
which
}
\"
"
}
}
function
assemble_commandline
()
{
local
logfile
=
"
$1
"
local
commandline
=
"jupyter
${
SJ_COMMAND
}
--no-browser 2>>
${
logfile
}
"
local
commandline
=
"jupyter
${
SJ_COMMAND
}
--no-browser 2>>
${
logfile
}
"
# If we are not running a job, we have to perform our own scheduling
if
[[
-z
${
SJ_ACCTCODE
}
]]
;
then
commandline
=
"nohup
${
commandline
}
> /dev/null & echo
\$
!"
fi
if
[[
-n
${
SJ_IMAGE
}
]]
;
then
commandline
=
"singularity exec
${
SJ_IMAGE
}
${
commandline
}
"
fi
commandline
=
"
$(
source_incfile
"
${
commandline
}
"
)
"
echo
"
${
commandline
}
"
}
...
...
@@ -342,6 +354,7 @@ function main () {
trap
clean_up INT QUIT TERM ERR EXIT
echo
"Establishing ssh master connection."
set
-x
# Set up control master for connection sharing
mkdir
-p
"
${
HOME
}
/.ssh"
ssh_socket_dir
=
"
$(
mktemp
-d
"
${
HOME
}
/.ssh/socket.XXXXX"
)
"
...
...
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