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Commit 18dd9f94 authored by Mathis Rosenhauer's avatar Mathis Rosenhauer
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Sleep longer after scancel to avoid DKRZepilog files

parent f1b8b704
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......@@ -52,9 +52,8 @@ clean_up () {
if [[ ${job_id} ]]; then
# Clean up temp files and cancel job
tmp_files="${tmp_files} out.${job_id} out.${job_id}_DKRZepilog \
vnc_gethost.${job_id}"
ssh ${MISTRAL} "scancel ${job_id}; sleep 1" 2> /dev/null
tmp_files="${tmp_files} out.${job_id} vnc_gethost.${job_id}"
ssh ${MISTRAL} "scancel ${job_id}; sleep 5" 2> /dev/null
else
echo "Job ID not available. Make sure the vncjob is not running!"
ssh ${MISTRAL} "squeue -u ${USERNAME}"
......@@ -74,9 +73,9 @@ clean_up () {
trap 'clean_up \"${job_id}\" \"${vnc_host_display}\" \"${xvnc_pid}\" \
\"${job_script}\"' INT QUIT TERM ERR
job_script=$( \
ssh ${MISTRAL} 'mkdir -p .startvnc && cd .startvnc && mktemp vncjob.XXXXX')
ssh ${MISTRAL} "mkdir -p .startvnc; cat > .startvnc/${job_script}" <<EOF
job_script=$(ssh ${MISTRAL} \
'mkdir -p .startvnc && cd .startvnc && mktemp vncjob.XXXXX')
ssh ${MISTRAL} "cat > .startvnc/${job_script}" <<EOF
#!/bin/bash
#SBATCH --partition=gpu
#SBATCH --ntasks=12
......
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