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Commit 314f8aec authored by Karl-Hermann Wieners's avatar Karl-Hermann Wieners
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Saved work in progress 

* Added sstClim template
* First steps towards queue settings
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standard_experiments/sstClim-LR.config
+ 14
− 4
View file @ 314f8aec
......@@ -4,8 +4,18 @@
[control]
RES = 63
LEVELS = 47
OCERES = GR15
RES = 63
LEVELS = 47
OCERES = GR15
START = 0 # Start from standard restart files
START_EXPERIMENT = amip_r1i1p1-LR
START_ORIG_DATE = 19781231
START_NEW_DATE =
CLIMATE_EXPERIMENT = piControl-LR
NODES = 4
TASKS = 32
THREADS = 2
START = 0 # Start from standard restart files
standard_experiments/sstClim.run.tmpl 0 → 100644
+ 318
− 0
View file @ 314f8aec
#! /bin/bash
#-----------------------------------------------------------------------------
# @ shell = /bin/bash
# @ job_name = %EXP_ID
# @ wall_clock_limit = 03:00:00
# @ job_type = parallel
# @ node_usage = not_shared
# @ network.MPI = sn_all,not_shared,us
# @ rset = rset_mcm_affinity
# @ mcm_affinity_options = mcm_distribute
# @ resources = ConsumableMemory(768Mb)
# @ node = %NODES
# @ tasks_per_node = %TASKS
# @ task_affinity = cpu(%THREADS)
# @ output = $(job_name).$(jobid)
# @ error = $(output)
# @ notification = error
# @ account_no = %ACCOUNT
# @ parallel_threads = %THREADS
# @
# @ queue
export MP_INFOLEVEL=0
export MP_PRINTENV=no
export MP_LABELIO=no
export MP_SHARED_MEMORY=yes
export MP_SHM_ATTACH_THRESH=256000
export MP_USE_BULK_XFER=yes
export MP_BULK_MIN_MSG_SIZE=128k
export MP_RDMA_MTU=4k
export MP_EAGER_LIMIT=64k
export MP_BUFFER_MEM=32m,512m
export MP_FIFO_MTU=4k
export MP_RFIFO_SIZE=16m
export MP_SINGLE_THREAD=no
export OMP_STACKSIZE=64M
export OMP_NUM_THREADS=%THREADS
export XLFRTEOPTS="intrinthds=1:err_recovery=no:langlvl=2003std"
ulimit -c 0
#-----------------------------------------------------------------------------
#
# Version for shell script running on DKRZ blizzard (Power6)
#
#-----------------------------------------------------------------------------
#
# Job file to run ECHAM 6
#
#-----------------------------------------------------------------------------
#
# If a command has a non-zero exit status, execute ERR trap, if set, and exit
#
set -ex
#
#-----------------------------------------------------------------------------
#
START=%START
#
# START=0: restart from CMIP5-AMIP-restartfiles
# START=1: restart from restartfiles of %EXP_ID or initial
# run (set RERUN=.false. for the first experiment/edit namelist)
#
# experiment identifier: your given experimenter-id according to
# http://svn.zmaw.de/dokuwiki/doku.php?id=listofids:list_of_experimenter_ids
# followed by a number for the current experiment
#
EXP="%EXP_ID" # experiment identifier
expname="%EXPNAME" # experiments name
#
RERUN=.true. # Rerun switch; .false. for initial run, .true. else
#
NTHREADS=%THREADS
export ECHAM6_THREADS=$NTHREADS
#
RES=%RES
LEVELS=%LEVELS
OCERES=%OCERES
#
#-----------------------------------------------------------------------------
#
WORK_DIR=%MODEL_ROOT
#
# absolute path to directory with job scripts:
SCRIPTDIR=$WORK_DIR/experiments/$EXP/scripts
#
# absolute path to directory with plenty of space:
EXPDIR=%DATA_ROOT/experiments/$EXP
#
# absolute path to directory with initial data:
INI_DATA=/pool/data/ECHAM6
INIECH=/pool/data/ECHAM6/T${RES}
#
# absolute path to directory with SST and sea ice files:
BOUNDARY_DATA=${INI_DATA}/T${RES}/amip2
#
# absolute path to directory with initial data for JSBACH:
INIJSB=/pool/data/JSBACH/T${RES}
INIJSBTRANS=/pool/data/JSBACH/T${RES}/New_Hampshire_LCC
#
# absolute path to model binary, including the executable
MODEL=${WORK_DIR}/bin/%ECHAM_EXE
#
#-----------------------------------------------------------------------------
#
# the directory for the experiment will be created, if not already there
if [ ! -d $EXPDIR ]; then
mkdir -p $EXPDIR
fi
#
# in case of Newstart from CMIP5-experiments copy the restart files
#
if [ "${START}" -eq 0 ]; then
odate=%START_ORIG_DATE
ndate=%START_NEW_DATE
pexp=%START_EXPERIMENT
cd $EXPDIR # output and rerun files are written into $EXPDIR
restart_dir=/work/mh0081/m214002/experiments/restarts/${pexp}
cp ${restart_dir}/rerun_${pexp}_echam_${odate}${ndate} .
cp ${restart_dir}/rerun_${pexp}_co2_${odate}${ndate} .
cp ${restart_dir}/rerun_${pexp}_jsbach_${odate}${ndate} .
cp ${restart_dir}/rerun_${pexp}_surf_${odate}${ndate} .
cp ${restart_dir}/rerun_${pexp}_veg_${odate}${ndate} .
ln -sf rerun_${pexp}_echam_${odate}${ndate} restart_${EXP}_echam.nc
ln -sf rerun_${pexp}_co2_${odate}${ndate} restart_${EXP}_co2.nc
ln -sf rerun_${pexp}_jsbach_${odate}${ndate} restart_${EXP}_jsbach.nc
ln -sf rerun_${pexp}_surf_${odate}${ndate} restart_${EXP}_surf.nc
ln -sf rerun_${pexp}_veg_${odate}${ndate} restart_${EXP}_veg.nc
fi
#-----------------------------------------------------------------------------
#
cd $EXPDIR # output and rerun files are written into $EXPDIR
#-----------------------------------------------------------------------------
#
# specification of files for ECHAM
#
#-----------------------------------------------------------------------------
#
rm -f unit.?? sst* ice* hdpara.nc hdstart.nc rrtadata lctlib.def jsbach.nc rrtmg_lw.nc
rm -f ECHAM6_CldOptProps.nc aero* swflux* ozon* greenhouse_gases.nc strat_aerosol_*
rm -f landuse*
#
ln -s ${INIECH}/T${RES}L${LEVELS}_jan_spec.nc unit.23
ln -s ${INIECH}/T${RES}${OCERES}_jan_surf.nc unit.24
#
ln -s ${INIECH}/T${RES}${OCERES}_VLTCLIM.nc unit.90
ln -s ${INIECH}/T${RES}${OCERES}_VGRATCLIM.nc unit.91
ln -s ${INIECH}/T${RES}_TSLCLIM2.nc unit.92
#
ln -s ${INI_DATA}/surrta_data rrtadata
ln -s ${INI_DATA}/rrtmg_lw.nc rrtmg_lw.nc
ln -s ${INI_DATA}/ECHAM6_CldOptProps.nc ECHAM6_CldOptProps.nc
ln -s ${INI_DATA}/hdpara.nc hdpara.nc
ln -s ${INI_DATA}/hdstart.nc hdstart.nc
#
#
# Input data for SST-CLIM
#
year=1849
while [[ $year -lt 1880 ]]
do
ln -s ${INIECH}/aero2/T${RES}_aeropt_kinne_sw_b14_coa.nc aero_coarse_${year}.nc
ln -s ${INIECH}/aero2/T${RES}_aeropt_kinne_sw_b14_fin_1865.nc aero_fine_${year}.nc
ln -s ${INIECH}/aero2/T${RES}_aeropt_kinne_lw_b16_coa.nc aero_farir_${year}.nc
ln -s ${INIECH}/T${RES}_ozone_CMIP5_1850-1860.nc ozon${year}
ln -s ${INIJSBTRANS}/hist/LUH_harvest_T${RES}_1850.nc landuseHarvest.${year}.nc
ln -s ${INIJSBTRANS}/no_LUH_transitions_T${RES}.nc landuseTransitions.${year}.nc
(( year = year+1 ))
done
case ${expname} in
sstClim-LR )
ln -s ${INIECH}/T${RES}${OCERES}_piControl-LR_sst_1880-2379.nc unit.20
ln -s ${INIECH}/T${RES}${OCERES}_piControl-LR_sic_1880-2379.nc unit.96
;;
sstClim-MR )
ln -s ${INIECH}/T${RES}${OCERES}_piControl-MR_sst_1850-2349.nc unit.20
ln -s ${INIECH}/T${RES}${OCERES}_piControl-MR_sic_1850-2349.nc unit.96
;;
esac
;;
#
amip-LR | amip-MR )
year=1975
while [[ $year -lt 2006 ]]
do
ln -s ${BOUNDARY_DATA}/T${RES}_amip2sst_${year}.nc sst${year}
ln -s ${BOUNDARY_DATA}/T${RES}_amip2sic_${year}.nc ice${year}
# aerosols
ln -s ${INIECH}/aero2/T${RES}_aeropt_kinne_sw_b14_coa.nc aero_coarse_${year}.nc
ln -s ${INIECH}/aero2/T${RES}_aeropt_kinne_sw_b14_fin_${year}.nc aero_fine_${year}.nc
ln -s ${INIECH}/aero2/T${RES}_aeropt_kinne_lw_b16_coa.nc aero_farir_${year}.nc
# ozone
ln -s ${INIECH}/ozone2/T${RES}_ozone_CMIP5_${year}.nc ozon${year}
# solar irradiance
ln -s ${INI_DATA}/solar_irradiance/swflux_14band_${year}.nc swflux_${year}.nc
# volcanic aerosols
ln -s ${INIECH}/volcano_aerosols/strat_aerosol_ir_T${RES}_${year}.nc strat_aerosol_ir_${year}.nc
ln -s ${INIECH}/volcano_aerosols/strat_aerosol_sw_T${RES}_${year}.nc strat_aerosol_sw_${year}.nc
# jsbach transitions
ln -s ${INIJSBTRANS}/hist/LUH_harvest_T${RES}_${year}.nc landuseHarvest.${year}.nc
ln -s ${INIJSBTRANS}/hist/LUH_transitions_T${RES}_${year}.nc landuseTransitions.${year}.nc
(( year = year+1 ))
done
year=2006
while [[ $year -lt 2010 ]]
do
ln -s ${BOUNDARY_DATA}/T${RES}_amip2sst_${year}.nc sst${year}
ln -s ${BOUNDARY_DATA}/T${RES}_amip2sic_${year}.nc ice${year}
# aerosols
ln -s ${INIECH}/aero2/T${RES}_aeropt_kinne_sw_b14_coa.nc aero_coarse_${year}.nc
ln -s ${INIECH}/aero2/T${RES}_aeropt_kinne_sw_b14_fin_${year}.nc aero_fine_${year}.nc
ln -s ${INIECH}/aero2/T${RES}_aeropt_kinne_lw_b16_coa.nc aero_farir_${year}.nc
# ozone
ln -s ${INIECH}/ozone2/T${RES}_ozone_CMIP5_${year}.nc ozon${year}
# solar irradiance
ln -s ${INI_DATA}/solar_irradiance/swflux_14band_${year}.nc swflux_${year}.nc
# volcanic aerosols
ln -s ${INIECH}/volcano_aerosols/strat_aerosol_ir_T${RES}_${year}.nc strat_aerosol_ir_${year}.nc
ln -s ${INIECH}/volcano_aerosols/strat_aerosol_sw_T${RES}_${year}.nc strat_aerosol_sw_${year}.nc
# jsbach transitions
ln -s ${INIJSBTRANS}/rcp45/LUH_harvest_T${RES}_rcp45_${year}.nc landuseHarvest.${year}.nc
ln -s ${INIJSBTRANS}/rcp45/LUH_transitions_T${RES}_rcp45_${year}.nc landuseTransitions.${year}.nc
(( year = year+1 ))
done
;;
* )
echo "ERROR: ${expname} not supported, inputfiles not available."
exit 1
;;
esac
#
# greenhouse gases
#
ln -s ${INI_DATA}/greenhouse_rcp45.nc greenhouse_gases.nc
#
#-----------------------------------------------------------------------------
#
# specification of files for JSBACH
# jsbach.nc has to fit the first year of transitions (e.g. 1976)
#
#-----------------------------------------------------------------------------
ln -s ${INI_DATA}/jsbach/lctlib_nlct21.def_rev4154 lctlib.def
ln -s ${INIJSB}/jsbach_T${RES}${OCERES}_11tiles_1976.nc jsbach.nc
#-----------------------------------------------------------------------------
#
# ECHAM6 namelist
#
if [ ! -r namelist.echam ]
then
sed -e '1,$s/${EXPID}/%EXP_ID/' /pool/data/ECHAM6/cmip5_namelists/%EXPNAME/namelist.echam > namelist.echam1
mv namelist.echam1 namelist.echam
fi
echo "* ----------------------------------------------------------------------"
echo "* Namelist of ECHAM6: namelist.echam"
echo "* ----------------------------------------------------------------------"
cat namelist.echam
echo "* ----------------------------------------------------------------------"
echo "* end of namelist.echam"
echo "* ----------------------------------------------------------------------"
echo ""
#------------------------------------------------------------------------------
#-- Namelist JSBACH
#
if [ ! -r namelist.jsbach ]
then
cp /pool/data/ECHAM6/cmip5_namelists/%EXPNAME/namelist.jsbach .
fi
echo "* ----------------------------------------------------------------------"
echo "* Namelist of JSBACH: namelist.jsbach"
echo "* ----------------------------------------------------------------------"
cat namelist.jsbach
echo "* ----------------------------------------------------------------------"
echo "* end of namelist.jsbach"
echo "* ----------------------------------------------------------------------"
echo ""
#-----------------------------------------------------------------------------
# Start the run:
#
cp $SCRIPTDIR/job1 .
cp $SCRIPTDIR/job2 .
#
# IBM/POE startup
#
poe $MODEL
#
case $? in
0)
echo "Model experiment checkpointed."
#-- save restart data
chmod u+x subjob1
./subjob1
#-- submit post-processing job
llsubmit subjob2
#-- submit next production job
cd $SCRIPTDIR
chmod u+x %EXP_ID.run
llsubmit %EXP_ID.run
;;
127)
echo "Model finished experiment."
#-- save restart data
chmod u+x subjob1
./subjob1
#-- submit post-processing job
llsubmit subjob2
;;
*)
echo "ERROR: model run stopped with poe return value ${?}."
exit 1
;;
esac
#
exit
#
#-----------------------------------------------------------------------------
standard_queue_settings/tws.tmpl 0 → 100644
+ 25
− 0
View file @ 314f8aec
#
# Setup for IBM PE/TWS LL
#
# @ shell = /client/bin/ksh
# @ job_type = parallel
# @ node_usage = not_shared
# @ network.MPI = sn_all,not_shared,us
# @ rset = rset_mcm_affinity
# @ mcm_affinity_options = mcm_accumulate
# @ node = %NODES
# @ tasks_per_node = %NPROCS
# @ task_affinity = cpu(%THREADS)
#% if %THREADS > 1
# @ parallel_threads = %THREADS
#% end if
# @ resources = ConsumableMemory(1000mb)
# @ wall_clock_limit = 01:00:00
# @ job_name = %EXP_ID
# @ output = LOG.$(job_name).o$(jobid)
# @ error = LOG.$(job_name).o$(jobid)
# @ notification = error
# @ account_no = xxxxxx
# @ queue
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