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Commit 8383d490 authored by Martin Schupfner's avatar Martin Schupfner
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Update MPI-ESM configuration and scripts 

- mpism: tables - fixed unit for arctic sftgifIt
- MK cdocmorinfos: updated references
- ncatted scripts: updated references, added scripts version for TKs simulations
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cmor/mpiesm/scripts/ncatted.sh → cmor/mpiesm/scripts/ncatted_MK.sh
+ 6
− 10
View file @ 8383d490
......@@ -8,10 +8,9 @@ module load nco
# Attributes
TITLE="MPI-ESM1-2 output prepared for PalMod2"
REFERENCES="Kapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400,\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217"
REFERENCES="Kleinen, T., Mikolajewicz, U. and Brovkin, V. (2020). Terrestrial methane emissions from the Last Glacial Maximum to the preindustrial period. Climate of the Past, 16(2):575–595. doi: 10.5194/cp-16-575-2020.\nKleinen, T., Gromov, S., Steil, B. and Brovkin, V. (2021). Atmospheric methane underestimated in future climate projections. Environmental Research Letters, 16(9):094006. doi: 10.1088/1748-9326/ac1814.\nKapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400,\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217"
REFERENCES="Kapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400,\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217\nBathymetry: Meccia, V. L., & Mikolajewicz, U. (2018). Interactive ocean bathymetry and coastlines for simulating the last deglaciation with the Max Planck Institute earth system model (MPI-ESM-v1.2). Geoscientific Model Development, 11(11), 4677–4692. https://doi.org/10.5194/gmd-11-4677-2018\nRiver Routing: Riddick, T., Brovkin, V., Hagemann, S., & Mikolajewicz, U. (2018). Dynamic hydrological discharge modelling for coupled climate model simulations of the last glacial cycle: The MPI-DynamicHD model version 3.0. Geoscientific Model Development, 11(10), 4291–4316. https://doi.org/10.5194/gmd-11-4291-2018"
NOMINAL_RESOLUTION="500 km" # echam6, jsbach, mpiom, hamocc
#NOMINAL_RESOLUTION="km" # vilma
#NOMINAL_RESOLUTION="km" # vilma
#NOMINAL_RESOLUTION="25 km" # mPISM
SOURCE="MPI-ESM1.2-CR (2017): \naerosol: none, prescribed Kinne (2010)\natmos: ECHAM6.3 (spectral T31; 96 x 48 longitude/latitude; 31 levels; top level 10 hPa)\natmosChem: none\nland: JSBACH3.20\nlandIce: none/prescribed\nocean: MPIOM1.63 (bipolar GR3.0, approximately 300km; 122 x 101 longitude/latitude; 40 levels; top grid cell 0-15 m)\nocnBgchem: none\nseaIce: unnamed (thermodynamic (Semtner zero-layer) dynamic (Hibler 79) sea ice model)\nsolidLand: none/prescribed"
CONVENTIONS="CF-1.7 PalMod-2.0"
......@@ -39,7 +38,7 @@ TABLE_INFO[LImon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e3656
TABLE_INFO[SImon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Emon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[AERmon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
#
#
#TABLE_INFO[]=
declare -A VARIANT_INFO
VARIANT_INFO["1"]="Predecessor model version to p2. p2 contains a range of bug fixes and an updated model tuning: it comprises the introduction of a brine plume parameterization in MPI-OM and a modification of sea-ice lead closure parameters, improvement of the automated topography generation scripts (e.g. baroclinic exchange in shallow fjords), and a replacement of the direct use of topographic roughness in ECHAM6 by a parameterized treatment like the one in the standard ECHAM6 model. Tuning parameters are taken from Mauritsen and Roeckner (2020) and comprise the surface value of the critical humidity profile for cloud formation (crs), the threshold between cloud water and ice (csecfrl) and the fall speed of cloud ice (cvtfall). Additionally, a mean volcanic aerosol forcing was taken into account. For details see Supporting Information of Kapsch et al., 2022."
......@@ -58,12 +57,8 @@ echo "-------------------------"
#exp_id=transient-deglaciation-prescribed-ice6g_r1i1p1f1-CR
exp_id=transient-deglaciation-prescribed-glac1d_r1i1p1f1-CR
ifolder=/work/bk1192/k204212/palmod/${exp_id}/archive/PalMod2/
ifolder=/work/bk1192/k204212/palmod_secondBatch/${exp_id}/archive/PalMod2/
ifolder=/work/bk1192/k204212/palmod_thirdBatch/${exp_id}/archive/PalMod2/
ifolder=/work/kd1292/k204212/palmod_errataBatch/${exp_id}/archive/PalMod2/
#ifolder=/work/bk1192/k204212/palmod_pismtest/transient-deglaciation-prescribed-glac1d_r1i1p1f1-CR/archive/PalMod2
#ifolder=/work/ik1017/ESGF_Buff/k204212/PalMod2_test
#ifolder=/work/kd1292/k204212/palmod_MK/${exp_id}/archive/PalMod2/
ifolder=/work/kd1292/ESGF_Buff/k204212/palmod_MK/archive/PalMod2
ifiles=($(find $ifolder -type f))
echo ${#ifiles[@]} files found.
......@@ -80,6 +75,7 @@ echo $i $ifile
#ncatted -O -h -a parent_experiment_id,global,m,c,"${PARENTEXPID}" -a variant_info,global,m,c,"${VARIANT_INFO[$physics_index]}" -a history,global,m,c,"$HISTORY" -a creation_date,global,m,c,"$CREATION_DATE" -a physics_index,global,m,c,"$physics_index" -a variant_label,global,m,c,"$memberid" -a table_info,global,m,c,"${TABLE_INFO[$table]}" -a Conventions,global,m,c,"$CONVENTIONS" -a title,global,m,c,"$TITLE" -a references,global,m,c,"$REFERENCES" -a source,global,m,c,"$SOURCE" -a nominal_resolution,global,m,c,"$NOMINAL_RESOLUTION" $ifile || echo "ERROR $ifile"
#ncatted -O -h -a variant_info,global,m,c,"${VARIANT_INFO[$physics_index]}" $ifile || echo "ERROR $ifile"
#ncatted -O -h -a tracking_id,global,m,c,"$uuid" $ifile || echo "ERROR $ifile"
ncatted -O -h -a history,global,m,c,"$HISTORY" -a creation_date,global,m,c,"$CREATION_DATE" -a table_info,global,m,c,"${TABLE_INFO[$table]}" -a Conventions,global,m,c,"$CONVENTIONS" -a title,global,m,c,"$TITLE" -a references,global,m,c,"$REFERENCES" $ifile || echo "ERROR $ifile"
# Adjust filename timestamp
if [[ "$table" != *"fx"* ]]; then
......
cmor/mpiesm/scripts/ncatted_TK_ssp.sh 0 → 100644
+ 118
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View file @ 8383d490
#!/bin/bash
set -ue
module load nco
# todo: rename version_ids
# Attributes
TITLE="MPI-ESM1-2 output prepared for PalMod2"
REFERENCES="Kleinen, T., Mikolajewicz, U. and Brovkin, V. (2020). Terrestrial methane emissions from the Last Glacial Maximum to the preindustrial period. Climate of the Past, 16(2):575–595. doi: 10.5194/cp-16-575-2020\nKleinen, T., Gromov, S., Steil, B. and Brovkin, V. (2021). Atmospheric methane underestimated in future climate projections. Environmental Research Letters, 16(9):094006. doi: 10.1088/1748-9326/ac1814\nKapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217"
NOMINAL_RESOLUTION="500 km" # echam6, jsbach, mpiom, hamocc
#NOMINAL_RESOLUTION="km" # vilma
#NOMINAL_RESOLUTION="25 km" # mPISM
SOURCE="MPI-ESM1.2-CR (2017): \naerosol: none, prescribed Kinne (2010)\natmos: ECHAM6.3 (spectral T31; 96 x 48 longitude/latitude; 31 levels; top level 10 hPa)\natmosChem: unnamed (accelerated methane chemistry)\nland: JSBACH3.20, River Transport Model\nlandIce: none, prescribed\nocean: MPIOM1.63 (bipolar GR3.0, approximately 300km; 122 x 101 longitude/latitude; 40 levels; top grid cell 0-15 m)\nocnBgchem: none, prescribed\nseaIce: unnamed (thermodynamic (Semtner zero-layer) dynamic (Hibler 79) sea ice model)\nsolidLand: none, prescribed"
CONVENTIONS="CF-1.7 PalMod-2.0"
CREATION_DATE="2023-01-10T10:00:00Z"
HISTORY="2023-01-10T10:00:00Z ; CMOR rewrote data to be consistent with PalMod2, CF-1.7 PalMod-2.0 and CF standards."
#PARENTEXPID="no parent"
PARENTEXPID="transient-deglaciation-prescribed-glac1d-methane"
declare -A TABLE_INFO
# 00.00.02
TABLE_INFO[Amon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Omon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Lmon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[dec]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[fx]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Ofx]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
# 00.00.03
TABLE_INFO[Amon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Omon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Lmon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[dec]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[fx]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Ofx]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Odec]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[dec]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[LImon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[SImon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Emon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[AERmon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
#
#TABLE_INFO[]=
VARIANT_INFO="PalMod MPI-ESM1-2-CR setup with full methane cycle. Model physics identical to MPI-ESM1-2-CR simulation transient-deglaciation-prescribed_r1i1p1f1."
echo "------------------------"
echo $TITLE
echo $REFERENCES
echo $NOMINAL_RESOLUTION
echo $SOURCE
echo $CONVENTIONS
echo $CREATION_DATE
echo $HISTORY
echo ${TABLE_INFO[@]}
echo "-------------------------"
exp_id=ssp119-future-methane_r1i1p1f1-CR
exp_id=ssp126-future-methane_r1i1p1f1-CR
exp_id=ssp245-future-methane_r1i1p1f1-CR
exp_id=ssp370-future-methane_r1i1p1f1-CR
exp_id=ssp585-future-methane_r1i1p1f1-CR
ifolder=/work/kd1292/k204212/palmod_TK/${exp_id}/archive/PalMod2/
ifiles=($(find $ifolder -type f))
echo ${#ifiles[@]} files found.
i=0
for ifile in ${ifiles[@]}; do
i=$((i+1))
echo $i $ifile
table=$(echo $ifile | rev | cut -d '/' -f 1 | rev | cut -d '_' -f 2)
memberid=$(echo $ifile | rev | cut -d '/' -f 1 | rev | cut -d '_' -f 5)
physics_index=${memberid:5:1}
uuid="hdl:21.14105/$(uuidgen)"
# Run ncatted
#ncatted -O -h -a variant_info,global,m,c,"${VARIANTINFO}" -a parent_experiment_id,global,m,c,"${PARENTEXPID}" -a variant_info,global,m,c,"${VARIANT_INFO[$physics_index]}" -a history,global,m,c,"$HISTORY" -a creation_date,global,m,c,"$CREATION_DATE" -a physics_index,global,m,c,"$physics_index" -a variant_label,global,m,c,"$memberid" -a table_info,global,m,c,"${TABLE_INFO[$table]}" -a Conventions,global,m,c,"$CONVENTIONS" -a title,global,m,c,"$TITLE" -a references,global,m,c,"$REFERENCES" -a source,global,m,c,"$SOURCE" -a nominal_resolution,global,m,c,"$NOMINAL_RESOLUTION" $ifile || echo "ERROR $ifile"
#ncatted -O -h -a tracking_id,global,m,c,"$uuid" $ifile || echo "ERROR $ifile"
ncatted -O -h -a history,global,m,c,"$HISTORY" -a creation_date,global,m,c,"$CREATION_DATE" -a table_info,global,m,c,"${TABLE_INFO[$table]}" -a Conventions,global,m,c,"$CONVENTIONS" -a title,global,m,c,"$TITLE" -a references,global,m,c,"$REFERENCES" $ifile || echo "ERROR $ifile"
# Adjust filename timestamp
if [[ "$table" != *"fx"* ]]; then
trunk=$(echo $ifile | rev | cut -d '_' -f 2- | rev)
timestamp=$(echo $ifile | rev | cut -d '.' -f 2 | cut -d '_' -f 1 | rev)
time1=$(echo $timestamp | cut -d '-' -f 1 | sed 's/^0*//' )
time2=$(echo $timestamp | cut -d '-' -f 2 | sed 's/^0*//' )
echo $time1 $time2
# Case 1 - Decadal data
if [[ "$table" == *"dec"* ]]; then
if [[ "${time1: -1}" == "5" ]]; then
newtime1=$(printf "%04d" $(expr $time1 - 5))
newtime2=$(printf "%04d" $(expr $time2 + 5))
else
newtime1=$(printf "%04d" ${time1} )
newtime2=$(printf "%04d" ${time2} )
fi
# Case 2 - the rest - annual and monthly data
elif [[ "$table" == *"mon"* ]]; then
newtime1=$(printf "%06d" ${time1} )
newtime2=$(printf "%06d" ${time2} )
elif [[ "$table" == *"yr"* ]]; then
newtime1=$(printf "%04d" ${time1} )
newtime2=$(printf "%04d" ${time2} )
elif [[ "$table" == *"day"* ]]; then
newtime1=$(printf "%08d" ${time1} )
newtime2=$(printf "%08d" ${time2} )
elif [[ "$table" == *"hr"* ]]; then
newtime1=$(printf "%010d" ${time1} )
newtime2=$(printf "%010d" ${time2} )
else
echo "ERROR: ${table}: no timestamp renaming rule!"
continue
fi
# mv command
ifile_new=${trunk}_${newtime1}-${newtime2}.nc
[[ "$ifile" != "$ifile_new" ]] && {
mv -v $ifile $ifile_new || echo "ERROR renaming $ifile to $ifile_new"
}
fi
done
cmor/mpiesm/scripts/ncatted_TK_transient.sh 0 → 100644
+ 114
− 0
View file @ 8383d490
#!/bin/bash
set -ue
module load nco
# todo: rename version_ids
# Attributes
TITLE="MPI-ESM1-2 output prepared for PalMod2"
REFERENCES="Kleinen, T., Mikolajewicz, U. and Brovkin, V. (2020). Terrestrial methane emissions from the Last Glacial Maximum to the preindustrial period. Climate of the Past, 16(2):575–595. doi: 10.5194/cp-16-575-2020\nKleinen, T., Gromov, S., Steil, B. and Brovkin, V. (2021). Atmospheric methane underestimated in future climate projections. Environmental Research Letters, 16(9):094006. doi: 10.1088/1748-9326/ac1814\nKapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217"
NOMINAL_RESOLUTION="500 km" # echam6, jsbach, mpiom, hamocc
#NOMINAL_RESOLUTION="km" # vilma
#NOMINAL_RESOLUTION="25 km" # mPISM
SOURCE="MPI-ESM1.2-CR (2017): \naerosol: none, prescribed Kinne (2010)\natmos: ECHAM6.3 (spectral T31; 96 x 48 longitude/latitude; 31 levels; top level 10 hPa)\natmosChem: unnamed (accelerated methane chemistry)\nland: JSBACH3.20, River Transport Model\nlandIce: none, prescribed\nocean: MPIOM1.63 (bipolar GR3.0, approximately 300km; 122 x 101 longitude/latitude; 40 levels; top grid cell 0-15 m)\nocnBgchem: none, prescribed\nseaIce: unnamed (thermodynamic (Semtner zero-layer) dynamic (Hibler 79) sea ice model)\nsolidLand: none, prescribed"
CONVENTIONS="CF-1.7 PalMod-2.0"
CREATION_DATE="2023-01-10T10:00:00Z"
HISTORY="2023-01-10T10:00:00Z ; CMOR rewrote data to be consistent with PalMod2, CF-1.7 PalMod-2.0 and CF standards."
PARENTEXPID="no parent"
#PARENTEXPID="transient-deglaciation-prescribed-glac1d-methane"
declare -A TABLE_INFO
# 00.00.02
TABLE_INFO[Amon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Omon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Lmon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[dec]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[fx]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Ofx]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
# 00.00.03
TABLE_INFO[Amon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Omon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Lmon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[dec]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[fx]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Ofx]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Odec]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[dec]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[LImon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[SImon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[Emon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
TABLE_INFO[AERmon]="Creation Date:(14 February 2022) MD5:26bac4b397da7babac4e36561826e6b0"
#
#TABLE_INFO[]=
VARIANT_INFO="PalMod MPI-ESM1-2-CR setup with full methane cycle. Model physics identical to MPI-ESM1-2-CR simulation transient-deglaciation-prescribed_r1i1p1f1."
echo "------------------------"
echo $TITLE
echo $REFERENCES
echo $NOMINAL_RESOLUTION
echo $SOURCE
echo $CONVENTIONS
echo $CREATION_DATE
echo $HISTORY
echo ${TABLE_INFO[@]}
echo "-------------------------"
exp_id=transient-deglaciation-prescribed-glac1d-methane_r1i1p1f1-CR
ifolder=/work/kd1292/k204212/palmod_TK/${exp_id}/archive/PalMod2/
ifiles=($(find $ifolder -type f))
echo ${#ifiles[@]} files found.
i=0
for ifile in ${ifiles[@]}; do
i=$((i+1))
echo $i $ifile
table=$(echo $ifile | rev | cut -d '/' -f 1 | rev | cut -d '_' -f 2)
memberid=$(echo $ifile | rev | cut -d '/' -f 1 | rev | cut -d '_' -f 5)
physics_index=${memberid:5:1}
uuid="hdl:21.14105/$(uuidgen)"
# Run ncatted
#ncatted -O -h -a variant_info,global,m,c,"${VARIANTINFO}" -a parent_experiment_id,global,m,c,"${PARENTEXPID}" -a variant_info,global,m,c,"${VARIANT_INFO[$physics_index]}" -a history,global,m,c,"$HISTORY" -a creation_date,global,m,c,"$CREATION_DATE" -a physics_index,global,m,c,"$physics_index" -a variant_label,global,m,c,"$memberid" -a table_info,global,m,c,"${TABLE_INFO[$table]}" -a Conventions,global,m,c,"$CONVENTIONS" -a title,global,m,c,"$TITLE" -a references,global,m,c,"$REFERENCES" -a source,global,m,c,"$SOURCE" -a nominal_resolution,global,m,c,"$NOMINAL_RESOLUTION" $ifile || echo "ERROR $ifile"
#ncatted -O -h -a tracking_id,global,m,c,"$uuid" $ifile || echo "ERROR $ifile"
ncatted -O -h -a history,global,m,c,"$HISTORY" -a creation_date,global,m,c,"$CREATION_DATE" -a table_info,global,m,c,"${TABLE_INFO[$table]}" -a Conventions,global,m,c,"$CONVENTIONS" -a title,global,m,c,"$TITLE" -a references,global,m,c,"$REFERENCES" $ifile || echo "ERROR $ifile"
# Adjust filename timestamp
if [[ "$table" != *"fx"* ]]; then
trunk=$(echo $ifile | rev | cut -d '_' -f 2- | rev)
timestamp=$(echo $ifile | rev | cut -d '.' -f 2 | cut -d '_' -f 1 | rev)
time1=$(echo $timestamp | cut -d '-' -f 1 | sed 's/^0*//' )
time2=$(echo $timestamp | cut -d '-' -f 2 | sed 's/^0*//' )
echo $time1 $time2
# Case 1 - Decadal data
if [[ "$table" == *"dec"* ]]; then
if [[ "${time1: -1}" == "6" ]]; then
newtime1=$(printf "%05d" $(expr $time1 - 5))
newtime2=$(printf "%05d" $(expr $time2 + 4))
else
newtime1=$(printf "%05d" ${time1} )
newtime2=$(printf "%05d" ${time2} )
fi
# Case 2 - the rest - annual and monthly data
elif [[ "$table" == *"mon"* ]]; then
newtime1=$(printf "%07d" ${time1} )
newtime2=$(printf "%07d" ${time2} )
elif [[ "$table" == *"yr"* ]]; then
newtime1=$(printf "%05d" ${time1} )
newtime2=$(printf "%05d" ${time2} )
elif [[ "$table" == *"day"* ]]; then
newtime1=$(printf "%09d" ${time1} )
newtime2=$(printf "%09d" ${time2} )
elif [[ "$table" == *"hr"* ]]; then
newtime1=$(printf "%011d" ${time1} )
newtime2=$(printf "%011d" ${time2} )
else
echo "ERROR: ${table}: no timestamp renaming rule!"
continue
fi
# mv command
ifile_new=${trunk}_${newtime1}-${newtime2}.nc
[[ "$ifile" != "$ifile_new" ]] && {
mv -v $ifile $ifile_new || echo "ERROR renaming $ifile to $ifile_new"
}
fi
done
cmor/mpiesm/scripts/tables/MPI-ESM1-2_mpism_PalMod2_mapping.txt
+ 1
− 1
View file @ 8383d490
......@@ -53,7 +53,7 @@
! listed in the following: !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
&parameter cmor_name="sftgifIt" name="ifl,gi,fi,o" project_mip_table="IdecAnt" units="1" cell_methods="m" character_axis="typelice" /
&parameter cmor_name="sftgifIt" name="ifl,gi,fi,o" project_mip_table="IdecGre" units="%" cell_methods="m" character_axis="typelice" /
&parameter cmor_name="sftgifIt" name="ifl,gi,fi,o" project_mip_table="IdecGre" units="1" cell_methods="m" character_axis="typelice" /
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
! Diagnosed Variables listed in the following: !
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
......
cmor/mpiesm/scripts/transient-deglaciation-prescribed-glac1d_r1i1p1f1-CR_cdocmorinfo
+ 1
− 0
View file @ 8383d490
......@@ -45,6 +45,7 @@ SUB_EXPERIMENT=none
SOURCE_ID=MPI-ESM1-2-CR
#MODEL_ID=MPI-ESM1-2-CR
REFERENCES="Kapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400,\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217"
#\nBathymetry: Meccia, V. L., & Mikolajewicz, U. (2018). Interactive ocean bathymetry and coastlines for simulating the last deglaciation with the Max Planck Institute earth system model (MPI-ESM-v1.2). Geoscientific Model Development, 11(11), 4677–4692. https://doi.org/10.5194/gmd-11-4677-2018\nRiver Routing: Riddick, T., Brovkin, V., Hagemann, S., & Mikolajewicz, U. (2018). Dynamic hydrological discharge modelling for coupled climate model simulations of the last glacial cycle: The MPI-DynamicHD model version 3.0. Geoscientific Model Development, 11(10), 4291–4316. https://doi.org/10.5194/gmd-11-4291-2018
SOURCE="MPI-ESM1.2-CR (2017): \naerosol: none, prescribed Kinne (2010)\natmos: ECHAM6.3 (spectral T31; 96 x 48 longitude/latitude; 31 levels; top level 10 hPa)\natmosChem: none\nland: JSBACH3.20\nlandIce: none/prescribed\nocean: MPIOM1.63 (bipolar GR3.0, approximately 300km; 122 x 101 longitude/latitude; 40 levels; top grid cell 0-15 m)\nocnBgchem: none\nseaIce: unnamed (thermodynamic (Semtner zero-layer) dynamic (Hibler 79) sea ice model)\nsolidLand: none/prescribed"
SOURCE_TYPE="AOGCM"
#CALENDAR=proleptic_gregorian
......
cmor/mpiesm/scripts/transient-deglaciation-prescribed-glac1d_r1i1p2f2-CR_cdocmorinfo
+ 1
− 0
View file @ 8383d490
......@@ -45,6 +45,7 @@ SUB_EXPERIMENT=none
SOURCE_ID=MPI-ESM1-2-CR
#MODEL_ID=MPI-ESM1-2-CR
REFERENCES="Kapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400,\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217"
#\nBathymetry: Meccia, V. L., & Mikolajewicz, U. (2018). Interactive ocean bathymetry and coastlines for simulating the last deglaciation with the Max Planck Institute earth system model (MPI-ESM-v1.2). Geoscientific Model Development, 11(11), 4677–4692. https://doi.org/10.5194/gmd-11-4677-2018\nRiver Routing: Riddick, T., Brovkin, V., Hagemann, S., & Mikolajewicz, U. (2018). Dynamic hydrological discharge modelling for coupled climate model simulations of the last glacial cycle: The MPI-DynamicHD model version 3.0. Geoscientific Model Development, 11(10), 4291–4316. https://doi.org/10.5194/gmd-11-4291-2018
SOURCE="MPI-ESM1.2-CR (2017): \naerosol: none, prescribed Kinne (2010)\natmos: ECHAM6.3 (spectral T31; 96 x 48 longitude/latitude; 31 levels; top level 10 hPa)\natmosChem: none\nland: JSBACH3.20\nlandIce: none/prescribed\nocean: MPIOM1.63 (bipolar GR3.0, approximately 300km; 122 x 101 longitude/latitude; 40 levels; top grid cell 0-15 m)\nocnBgchem: none\nseaIce: unnamed (thermodynamic (Semtner zero-layer) dynamic (Hibler 79) sea ice model)\nsolidLand: none/prescribed"
SOURCE_TYPE="AOGCM"
#CALENDAR=proleptic_gregorian
......
cmor/mpiesm/scripts/transient-deglaciation-prescribed-glac1d_r1i1p3f2-CR_cdocmorinfo
+ 1
− 0
View file @ 8383d490
......@@ -45,6 +45,7 @@ SUB_EXPERIMENT=none
SOURCE_ID=MPI-ESM1-2-CR
#MODEL_ID=MPI-ESM1-2-CR
REFERENCES="Kapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400,\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217"
#\nBathymetry: Meccia, V. L., & Mikolajewicz, U. (2018). Interactive ocean bathymetry and coastlines for simulating the last deglaciation with the Max Planck Institute earth system model (MPI-ESM-v1.2). Geoscientific Model Development, 11(11), 4677–4692. https://doi.org/10.5194/gmd-11-4677-2018\nRiver Routing: Riddick, T., Brovkin, V., Hagemann, S., & Mikolajewicz, U. (2018). Dynamic hydrological discharge modelling for coupled climate model simulations of the last glacial cycle: The MPI-DynamicHD model version 3.0. Geoscientific Model Development, 11(10), 4291–4316. https://doi.org/10.5194/gmd-11-4291-2018
SOURCE="MPI-ESM1.2-CR (2017): \naerosol: none, prescribed Kinne (2010)\natmos: ECHAM6.3 (spectral T31; 96 x 48 longitude/latitude; 31 levels; top level 10 hPa)\natmosChem: none\nland: JSBACH3.20\nlandIce: none/prescribed\nocean: MPIOM1.63 (bipolar GR3.0, approximately 300km; 122 x 101 longitude/latitude; 40 levels; top grid cell 0-15 m)\nocnBgchem: none\nseaIce: unnamed (thermodynamic (Semtner zero-layer) dynamic (Hibler 79) sea ice model)\nsolidLand: none/prescribed"
SOURCE_TYPE="AOGCM"
#CALENDAR=proleptic_gregorian
......
cmor/mpiesm/scripts/transient-deglaciation-prescribed-ice6g_r1i1p1f1-CR_cdocmorinfo
+ 1
− 0
View file @ 8383d490
......@@ -45,6 +45,7 @@ SUB_EXPERIMENT=none
SOURCE_ID=MPI-ESM1-2-CR
#MODEL_ID=MPI-ESM1-2-CR
REFERENCES="Kapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400,\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217"
#\nBathymetry: Meccia, V. L., & Mikolajewicz, U. (2018). Interactive ocean bathymetry and coastlines for simulating the last deglaciation with the Max Planck Institute earth system model (MPI-ESM-v1.2). Geoscientific Model Development, 11(11), 4677–4692. https://doi.org/10.5194/gmd-11-4677-2018\nRiver Routing: Riddick, T., Brovkin, V., Hagemann, S., & Mikolajewicz, U. (2018). Dynamic hydrological discharge modelling for coupled climate model simulations of the last glacial cycle: The MPI-DynamicHD model version 3.0. Geoscientific Model Development, 11(10), 4291–4316. https://doi.org/10.5194/gmd-11-4291-2018
SOURCE="MPI-ESM1.2-CR (2017): \naerosol: none, prescribed Kinne (2010)\natmos: ECHAM6.3 (spectral T31; 96 x 48 longitude/latitude; 31 levels; top level 10 hPa)\natmosChem: none\nland: JSBACH3.20\nlandIce: none/prescribed\nocean: MPIOM1.63 (bipolar GR3.0, approximately 300km; 122 x 101 longitude/latitude; 40 levels; top grid cell 0-15 m)\nocnBgchem: none\nseaIce: unnamed (thermodynamic (Semtner zero-layer) dynamic (Hibler 79) sea ice model)\nsolidLand: none/prescribed"
SOURCE_TYPE="AOGCM"
#CALENDAR=proleptic_gregorian
......
cmor/mpiesm/scripts/transient-deglaciation-prescribed-ice6g_r1i1p2f2-CR_cdocmorinfo
+ 1
− 0
View file @ 8383d490
......@@ -45,6 +45,7 @@ SUB_EXPERIMENT=none
SOURCE_ID=MPI-ESM1-2-CR
#MODEL_ID=MPI-ESM1-2-CR
REFERENCES="Kapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400,\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217"
#\nBathymetry: Meccia, V. L., & Mikolajewicz, U. (2018). Interactive ocean bathymetry and coastlines for simulating the last deglaciation with the Max Planck Institute earth system model (MPI-ESM-v1.2). Geoscientific Model Development, 11(11), 4677–4692. https://doi.org/10.5194/gmd-11-4677-2018\nRiver Routing: Riddick, T., Brovkin, V., Hagemann, S., & Mikolajewicz, U. (2018). Dynamic hydrological discharge modelling for coupled climate model simulations of the last glacial cycle: The MPI-DynamicHD model version 3.0. Geoscientific Model Development, 11(10), 4291–4316. https://doi.org/10.5194/gmd-11-4291-2018
SOURCE="MPI-ESM1.2-CR (2017): \naerosol: none, prescribed Kinne (2010)\natmos: ECHAM6.3 (spectral T31; 96 x 48 longitude/latitude; 31 levels; top level 10 hPa)\natmosChem: none\nland: JSBACH3.20\nlandIce: none/prescribed\nocean: MPIOM1.63 (bipolar GR3.0, approximately 300km; 122 x 101 longitude/latitude; 40 levels; top grid cell 0-15 m)\nocnBgchem: none\nseaIce: unnamed (thermodynamic (Semtner zero-layer) dynamic (Hibler 79) sea ice model)\nsolidLand: none/prescribed"
SOURCE_TYPE="AOGCM"
#CALENDAR=proleptic_gregorian
......
cmor/mpiesm/scripts/transient-deglaciation-prescribed-ice6g_r1i1p3f2-CR_cdocmorinfo
+ 1
− 0
View file @ 8383d490
......@@ -45,6 +45,7 @@ SUB_EXPERIMENT=none
SOURCE_ID=MPI-ESM1-2-CR
#MODEL_ID=MPI-ESM1-2-CR
REFERENCES="Kapsch, M.-L., Mikolajewicz, U., Ziemen, F., & Schannwell, C. (2022). Ocean response in transient simulations of the last deglaciation dominated by underlying ice-sheet reconstruction and method of meltwater distribution. Geophysical Research Letters, 49, e2021GL096767. https://doi.org/10.1029/2021GL096767\nMPI-ESM: Mauritsen, T. et al. (2019), Developments in the MPI‐M Earth System Model version 1.2 (MPI‐ESM1.2) and Its Response to Increasing CO2, J. Adv. Model. Earth Syst.,11, 998-1038, doi:10.1029/2018MS001400,\nMueller, W.A. et al. (2018): A high‐resolution version of the Max Planck Institute Earth System Model MPI‐ESM1.2‐HR. J. Adv. Model. EarthSyst.,10,1383–1413, doi:10.1029/2017MS001217"
#\nBathymetry: Meccia, V. L., & Mikolajewicz, U. (2018). Interactive ocean bathymetry and coastlines for simulating the last deglaciation with the Max Planck Institute earth system model (MPI-ESM-v1.2). Geoscientific Model Development, 11(11), 4677–4692. https://doi.org/10.5194/gmd-11-4677-2018\nRiver Routing: Riddick, T., Brovkin, V., Hagemann, S., & Mikolajewicz, U. (2018). Dynamic hydrological discharge modelling for coupled climate model simulations of the last glacial cycle: The MPI-DynamicHD model version 3.0. Geoscientific Model Development, 11(10), 4291–4316. https://doi.org/10.5194/gmd-11-4291-2018
SOURCE="MPI-ESM1.2-CR (2017): \naerosol: none, prescribed Kinne (2010)\natmos: ECHAM6.3 (spectral T31; 96 x 48 longitude/latitude; 31 levels; top level 10 hPa)\natmosChem: none\nland: JSBACH3.20\nlandIce: none/prescribed\nocean: MPIOM1.63 (bipolar GR3.0, approximately 300km; 122 x 101 longitude/latitude; 40 levels; top grid cell 0-15 m)\nocnBgchem: none\nseaIce: unnamed (thermodynamic (Semtner zero-layer) dynamic (Hibler 79) sea ice model)\nsolidLand: none/prescribed"
SOURCE_TYPE="AOGCM"
#CALENDAR=proleptic_gregorian
......
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