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Commit b2d9b41c authored by wachsylon's avatar wachsylon
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Added zarr support for input

parent f3b3c32e
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...@@ -152,7 +152,10 @@ class Tzis: ...@@ -152,7 +152,10 @@ class Tzis:
if self.verbose: if self.verbose:
print("Calculating chunk size") print("Calculating chunk size")
testds=xarray.open_dataset(mf[0]) if xarray_kwargs is not None:
testds=xarray.open_dataset(mf[0], **xarray_kwargs)
else:
testds=xarray.open_dataset(mf[0])
if not varname: if not varname:
self.varname = self._get_varname(testds) self.varname = self._get_varname(testds)
...@@ -195,7 +198,7 @@ class Tzis: ...@@ -195,7 +198,7 @@ class Tzis:
for var_id in mf_dset.variables: for var_id in mf_dset.variables:
mf_dset[var_id].unify_chunks() mf_dset[var_id].unify_chunks()
conflict_attrs = self.get_conflict_attrs(mf, mf_dset) conflict_attrs = self.get_conflict_attrs(mf, mf_dset, xarray_kwargs)
self.init_verify_provenance(reset=True) self.init_verify_provenance(reset=True)
...@@ -234,13 +237,17 @@ class Tzis: ...@@ -234,13 +237,17 @@ class Tzis:
print("You did not provide anything to open.") print("You did not provide anything to open.")
return None return None
def get_conflict_attrs(self, mf, mf_dset): def get_conflict_attrs(self, mf, mf_dset, xarray_kwargs):
conflict_attrs = {} conflict_attrs = {}
# try: # try:
maxdigits = len(str(len(mf))) maxdigits = len(str(len(mf)))
digitstring = "{0:0" + str(maxdigits) + "}" digitstring = "{0:0" + str(maxdigits) + "}"
for fileno, dset in enumerate(mf): for fileno, dset in enumerate(mf):
dset_attrs = xarray.open_dataset(dset).attrs if xarray_kwargs is not None:
ds=xarray.open_dataset(dset,**xarray_kwargs)
else:
ds=xarray.open_dataset(dset)
dset_attrs = ds.attrs
missing_attrs = { missing_attrs = {
k: v for k, v in dset_attrs.items() if k not in mf_dset.attrs k: v for k, v in dset_attrs.items() if k not in mf_dset.attrs
} }
......
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