Resolve "Calculate Climate Extremes Indices according to the ETCCDI standard with CDOs"

.gitlab-ci.yml

@@ -20,6 +20,7 @@ build:
   script:
     #- ls /pool/data
     - cd docs 
+    - chmod 755 ./leave_required_nbooks.sh && ./leave_required_nbooks.sh
     - make html
   after_script:
     #- conda deactivate
@@ -42,8 +43,11 @@ imageupdate:
   script:
     - docker build --tag gitlabci_notebook .
   only:
+    refs:
+      - branches
     changes:
       - Dockerfile
+      - environment.yaml
 
 pages:
   stage: deploy

Dockerfile

@@ -8,6 +8,7 @@ RUN micromamba install -y -n base -f /tmp/env.yaml && \
 ENV PATH=$PATH:/micromamba/pcondabin:/micromamba/bin
 USER root
 RUN apt-get update && apt-get install build-essential -y
+RUN apt-get install git -y
 
 RUN python -m ipykernel install --name python3 --display-name "python3" --user 
 

docs/leave_required_nbooks.sh

+#!/bin/sh
+if [ "${CI_COMMIT_BRANCH}" != "master" ]; then
+  a=$(git diff --name-only $CI_COMMIT_BEFORE_SHA $CI_COMMIT_SHA | grep ipynb | rev | cut -d '/' -f -1 | rev | tr '\n' ' ')
+  rm source/*.ipynb
+  for file in $a;
+  do
+    echo $file
+    git checkout source/$file ;
+  done
+fi
+

docs/source/use-case_climate-extremes-indices_cdo.ipynb

+../../notebooks/demo/use-case_climate-extremes-indices_cdo.ipynb
\ No newline at end of file

docs/source/use-cases.rst

@@ -16,3 +16,4 @@ Use-cases
    use-case_simple-vis_xarray-matplotlib_cmip6.ipynb
    use-case_global-yearly-mean-anomaly_xarray-hvplot_cmip6.ipynb
    use-case_convert-nc-to-tiff_rioxarray-xesmf_cmip.ipynb
+   use-case_climate-extremes-indices_cdo.ipynb

environment.yml

@@ -33,9 +33,12 @@ dependencies:
   - esmvalcore
   - requests
   - aiohttp
+  - wget
 #psyplot
   - psy-maps
   - psyplot
+  - cfchecker
+  - pyessv
 #
 #for psyplot on centos:
 #sudo ln -s /usr/lib64/libc.so.6 /usr/lib64/libc.musl-x86_64.so.1
@@ -46,3 +49,6 @@ dependencies:
   - pip:
     - sphinx-book-theme
     - pangeo-xesmf #for raster data
+    - git+https://github.com/cedadev/cc-yaml@master
+    - git+https://github.com/cedadev/compliance-check-lib@master
+    - git+https://github.com/AtMoDat/atmodat_data_checker@master