Merge branch 'setup-for-ci' of...

Merge branch 'setup-for-ci' of https://gitlab.dkrz.de/data-infrastructure-services/tutorials-and-use-cases into setup-for-ci

Merge branch 'setup-for-ci' of...
080d00a0 · Fabian Wachsmann · 94b95677 · 17f8d6f8 · 080d00a0 · 080d00a0
Commit 080d00a0 authored 2 years ago by Fabian Wachsmann
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -54,6 +54,7 @@ nb_execution_allow_errors = True
 nbsphinx_kernel_name = 'python3'
 #nbsphinx_timeout = -1
 nb_execution_timeout = -1
+execution_excludepatterns = ['*era5*.ipynb']
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.

--- a/docs/source/intake.rst
+++ b/docs/source/intake.rst
@@ -8,6 +8,7 @@ This is a training series on the cataloging package *intake*.
   tutorial_intake-1-introduction.ipynb
   tutorial_intake-1-2-dkrz-catalogs.ipynb
+   tutorial_intake-1-3-dkrz-catalogs-era5.ipynb
   tutorial_intake-2-subset-catalogs.ipynb
   tutorial_intake-3-merge-catalogs.ipynb
   tutorial_intake-4-preprocessing-derived-vars.ipynb

--- a/docs/source/tutorial_intake-1-3-dkrz-catalogs-era5.ipynb
+++ b/docs/source/tutorial_intake-1-3-dkrz-catalogs-era5.ipynb
+../../notebooks/demo/tutorial_intake-1-3-dkrz-catalogs-era5.ipynb
\ No newline at end of file
--- a/notebooks/clear_and_prepare_for_ci.ipynb
+++ b/notebooks/clear_and_prepare_for_ci.ipynb
@@ -2,7 +2,7 @@
 "cells": [
  {
   "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
@@ -11,11 +11,11 @@
  },
  {
   "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
-    "nbs = !find ./ -mindepth 2 -name \"*.ipynb\" ! -name \"*checkpoint.ipynb\" -type f "
+    "nbs = !find ./ -mindepth 2 -name \"*.ipynb\" ! -name \"*checkpoint.ipynb\" ! -name \"*era5*\" -type f "
   ]
  },
  {
@@ -84,9 +84,9 @@
 ],
 "metadata": {
  "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "Python 3 (based on the module python3/2022.01)",
   "language": "python",
-   "name": "python3"
+   "name": "python3_2022_01"
  },
  "language_info": {
   "codemirror_mode": {
@@ -98,7 +98,7 @@
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
-   "version": "3.10.0"
+   "version": "3.9.9"
  }
 },
 "nbformat": 4,

 %% Cell type:code id: tags:
 ``` python
 import json
 ```
 %% Cell type:code id: tags:
 ``` python
-nbs = !find ./ -mindepth 2 -name "*.ipynb" ! -name "*checkpoint.ipynb" -type f
+nbs = !find ./ -mindepth 2 -name "*.ipynb" ! -name "*checkpoint.ipynb" ! -name "*era5*" -type f
 ```
 %% Cell type:code id: tags:
 ``` python
 for nb in nbs:
    #!jupyter nbconvert --clear-output --inplace {nb}
    !jupyter nbconvert --ClearOutputPreprocessor.enabled=True --inplace {nb}
    with open(nb, 'r') as jsonFile:
        nbdata=json.load(jsonFile)
    nbdata["metadata"]["kernelspec"]["name"]="python3"
    nbdata["metadata"]["kernelspec"]["display_name"]="python3"
    with open(nb, 'w') as jsonFile:
        json.dump(nbdata, jsonFile, indent=1, ensure_ascii=False)
 ```
 %% Output
    [NbConvertApp] Converting notebook ./hands-on_excercises/1_hands-on_find_data_intake.ipynb to notebook
    [NbConvertApp] Writing 4392 bytes to ./hands-on_excercises/1_hands-on_find_data_intake.ipynb
    [NbConvertApp] Converting notebook ./hands-on_excercises/2_hands-on_tropical_nights_intake_xarray_cmip6.ipynb to notebook
    [NbConvertApp] Writing 4843 bytes to ./hands-on_excercises/2_hands-on_tropical_nights_intake_xarray_cmip6.ipynb
    [NbConvertApp] Converting notebook ./hands-on_solutions/2_hands-on_tropical_nights_intake_xarray_cmip6_solution.ipynb to notebook
    [NbConvertApp] Writing 7892 bytes to ./hands-on_solutions/2_hands-on_tropical_nights_intake_xarray_cmip6_solution.ipynb
    [NbConvertApp] Converting notebook ./hands-on_solutions/1_hands-on_find_data_intake_solution.ipynb to notebook
    [NbConvertApp] Writing 4999 bytes to ./hands-on_solutions/1_hands-on_find_data_intake_solution.ipynb
    [NbConvertApp] Converting notebook ./demo/use-case_simple-vis_xarray-matplotlib_cmip6.ipynb to notebook
    [NbConvertApp] Writing 8696 bytes to ./demo/use-case_simple-vis_xarray-matplotlib_cmip6.ipynb
    [NbConvertApp] Converting notebook ./demo/use-case_calculate-frost-days_intake-xarray_cmip6.ipynb to notebook
    [NbConvertApp] Writing 12892 bytes to ./demo/use-case_calculate-frost-days_intake-xarray_cmip6.ipynb
    [NbConvertApp] Converting notebook ./demo/dkrz-data-pool-cmip6.ipynb to notebook
    [NbConvertApp] Writing 16043 bytes to ./demo/dkrz-data-pool-cmip6.ipynb
    [NbConvertApp] Converting notebook ./demo/dkrz-intake-catalog.ipynb to notebook
    [NbConvertApp] Writing 12605 bytes to ./demo/dkrz-intake-catalog.ipynb
    [NbConvertApp] Converting notebook ./demo/use-case_convert-nc-to-tiff_rioxarray-xesmf_cmip.ipynb to notebook
    [NbConvertApp] Writing 13772 bytes to ./demo/use-case_convert-nc-to-tiff_rioxarray-xesmf_cmip.ipynb
    [NbConvertApp] Converting notebook ./demo/use-case_advanced_summer_days_intake_xarray_cmip6.ipynb to notebook
    [NbConvertApp] Writing 15325 bytes to ./demo/use-case_advanced_summer_days_intake_xarray_cmip6.ipynb
    [NbConvertApp] Converting notebook ./demo/tutorial_esmvaltool.ipynb to notebook
    [NbConvertApp] Writing 5332 bytes to ./demo/tutorial_esmvaltool.ipynb
    [NbConvertApp] Converting notebook ./demo/dkrz-jupyterhub-notebook.ipynb to notebook
    [NbConvertApp] Writing 5453 bytes to ./demo/dkrz-jupyterhub-notebook.ipynb
    [NbConvertApp] Converting notebook ./demo/tutorial_intake.ipynb to notebook
    [NbConvertApp] Writing 18803 bytes to ./demo/tutorial_intake.ipynb
    [NbConvertApp] Converting notebook ./demo/use-case_multimodel-comparison_xarray-cdo_cmip6.ipynb to notebook
    [NbConvertApp] Writing 17702 bytes to ./demo/use-case_multimodel-comparison_xarray-cdo_cmip6.ipynb
    [NbConvertApp] Converting notebook ./demo/use-case_plot-unstructured_psyplot_cmip6.ipynb to notebook
    [NbConvertApp] Writing 9342 bytes to ./demo/use-case_plot-unstructured_psyplot_cmip6.ipynb
    [NbConvertApp] Converting notebook ./demo/use-case_global-yearly-mean-anomaly_xarray-hvplot_cmip6.ipynb to notebook
    [NbConvertApp] Writing 14045 bytes to ./demo/use-case_global-yearly-mean-anomaly_xarray-hvplot_cmip6.ipynb
 %% Cell type:code id: tags:
 ``` python
 ```

--- a/notebooks/demo/tutorial_intake-1-3-dkrz-catalogs-era5.ipynb
+++ b/notebooks/demo/tutorial_intake-1-3-dkrz-catalogs-era5.ipynb