Catch error if something goes wrong with the rechunking

src/rechunk_data/__init__.py

@@ -9,7 +9,7 @@ from typing import Iterator, Optional
 from dask.utils import format_bytes
 import xarray as xr
 
-__version__ = "2206.0.1"
+__version__ = "2206.0.2"
 ProgramName = "rechunk-data"
 
 logging.basicConfig(
@@ -56,7 +56,9 @@ def parse_args() -> argparse.Namespace:
         type=str,
     )
     parser.add_argument(
-        "-v", action="count", default=0,
+        "-v",
+        action="count",
+        default=0,
     )
     parser.add_argument(
         "-V",
@@ -93,7 +95,10 @@ def _rechunk_dataset(dset: xr.Dataset, engine: str = "h5netcdf") -> xr.Dataset:
                 chunks[i] = None
             else:
                 chunks[i] = "auto"
-        dset[var].data = dset[var].data.rechunk(chunks)
+        try:
+            dset[var].data = dset[var].data.rechunk(chunks)
+        except Exception as error:
+            logger.warning("Could not set chunk size for %s: ", var, error.__str__())
         logger.debug("Settings encoding of variable %s", var)
         dset[var].encoding["chunksizes"] = dset[var].data.chunksize
         dset[var].encoding["zlib"] = True