Running with gitlab-runner 17.9.1 (bbf75488)
  on slurm instance runner t1_ZJNiN3, system ID: s_3b9487865d15
section_start:1742808976:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver Jacamar CI 0.24.1...
section_end:1742808976:prepare_executor
section_start:1742808976:prepare_script
Preparing environment
Targeting sbatch executor
Static builds directory in use, all jobs results kept. Please be aware of large disk space requirements when using this runner (minimum days: 1)
Running as m214003 UID: 1403 GID: 32054
Local time: 2025-03-24 10:36:16

Running on hpc-ci.dkrz.de via hpc-ci.dkrz.de...
section_end:1742808976:prepare_script
section_start:1742808976:get_sources
Getting source from Git repository
Fetching changes with git depth set to 1...
Initialized empty Git repository in /scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/.git/
Created fresh repository.
Checking out 3b65d721 as detached HEAD (ref is refs/merge-requests/146/head)...
Skipping Git submodules setup
section_end:1742808983:get_sources
section_start:1742808983:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 17.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/groups/gitlab-org/-/epics/6112
Slurm job command: sbatch --wait  --job-name=ci-701183_1742808983 --output=/scratch/hpc-ci/m214003/scripts/t1_ZJNiN3/003/mpim-sw/libcdi/701183/slurm-ci-701183.out --account=ka1125 --partition=shared --ntasks=8 --time=15:00 --nodes=1 /scratch/hpc-ci/m214003/scripts/t1_ZJNiN3/003/mpim-sw/libcdi/701183/build_script.bash
Submitted batch job 16040495
$ module purge
$ ${CI_PROJECT_DIR}/.ci/bb/levante-dkrz/${CI_JOB_NAME}
module load git
module load ruby/3.0.2-gcc-11.2.0
module load gcc/11.2.0-gcc-11.2.0
module load openmpi/4.1.2-gcc-11.2.0
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:25: installing 'config/compile'
configure.ac:17: installing 'config/config.guess'
configure.ac:17: installing 'config/config.sub'
configure.ac:20: installing 'config/install-sh'
configure.ac:20: installing 'config/missing'
app/Makefile.am: installing 'config/depcomp'
parallel-tests: installing 'config/test-driver'
interfaces/python/Makefile.am:3: installing 'config/py-compile'
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
applying contrib/00nagfor-libtool-patch/nagfor-libtool-2.4.6.patch
patching file config/ltmain.sh
Hunk #4 succeeded at 9566 (offset 2 lines).
Hunk #5 succeeded at 10302 (offset 2 lines).
applying contrib/01aix-deplib-rpath-patch/aix-deplib-libtool.patch
patching file config/ltmain.sh
Hunk #1 succeeded at 8635 (offset 1464 lines).
applying contrib/03ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.6.patch
patching file config/ltmain.sh
Hunk #2 succeeded at 7886 (offset 2 lines).
applying contrib/04ltmain-xlinker-patch/ltmain-xlinker-patch.patch
patching file config/ltmain.sh
applying contrib/05macos-nagfor-patch/macos-nagfor.patch
patching file config/ltmain.sh
Hunk #1 succeeded at 8960 (offset 2 lines).
applying contrib/06ltmain_nag_pthread-patch/ltmain_nag_pthread.patch
patching file config/ltmain.sh
Hunk #1 succeeded at 7938 (offset 2 lines).
Hunk #2 succeeded at 9578 (offset 2 lines).
Hunk #3 succeeded at 10350 (offset 2 lines).
applying contrib/07ltmain-early-xcompile-patch/ltmain-early-xcompile-libtool-2.4.6.patch
patching file config/ltmain.sh
applying contrib/08ltmain-parallel-printf-patch/ltmain-parallel-printf.patch
patching file config/ltmain.sh
configure.ac:25: installing 'config/compile'
configure.ac:20: installing 'config/missing'
app/Makefile.am: installing 'config/depcomp'
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
configure: setting up libtool
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... 
ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gcc option to accept ISO C99... none needed
checking For conformance to POSIX.1-2001.... yes
checking for C/C++ restrict keyword... __restrict
configure: setting up libtool
checking any compiler has problems building shared objects... no
configure: creating ./config.lt
config.lt: creating libtool
checking whether libtool can link C programs... yes
checking whether byte ordering is bigendian... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 
no
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for struct stat.st_blksize... yes
checking for malloc.h... yes
checking for sys/time.h... yes
checking for execinfo.h... yes
checking size parameter type for backtrace()... int
checking for library containing backtrace... none required
checking for mallinfo... yes
checking for pwrite... yes
checking for timegm... yes
checking for getline... yes
checking for uuid/uuid.h extra include path... (none required)
checking for library containing uuid_generate...  -luuid
checking for uuid/uuid.h... yes
checking whether uuid_generate is declared... yes
checking whether isnan is declared... yes
checking whether _SC_LARGE_PAGESIZE is declared... no
checking whether PAGESIZE is declared... no
checking whether PAGE_SIZE is declared... no
checking whether _SC_PAGE_SIZE is declared... yes
checking whether _SC_PAGESIZE is declared... yes
checking whether _PC_REC_XFER_ALIGN is declared... 
yes
checking whether POSIX_REC_XFER_ALIGN is declared... no
checking for library containing floor... -lm
checking whether __builtin_ctz is declared... yes
checking whether gcc is Clang... no
checking whether pthreads work with "-pthread" and "-lpthread"... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
CC:gcc CFLAGS:-g -O2 -pthread LIBS:-lpthread -lm -luuid 
checking for fdb5 library... suppressed
checking for szlib library... suppressed
checking for NetCDF library... suppressed
checking for the ECCODES library... suppressed
checking for GRIB support... yes
checking for ACROSS support... yes
checking for CGRIBEX support... yes
checking for SERVICE support... yes
checking for EXTRA support... yes
checking for IEG support... yes
checking for building an additional static CDI binary... no
checking for HIRLAM extensions... no
checking for grib_get_length... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating app/Makefile
config.status: creating cdi.settings
config.status: creating examples/Makefile
config.status: creating examples/pio/Makefile
config.status: creating interfaces/Makefile
config.status: creating interfaces/python/Makefile
config.status: creating src/Makefile
config.status: creating src/cmake/cdi/cdi-config-version.cmake
config.status: creating src/cmake/cdi/cdi-config.cmake
config.status: creating src/pkgconfig/cdi.pc
config.status: creating src/pkgconfig/cdi_f2003.pc
config.status: creating src/pkgconfig/cdipio.pc
config.status: creating tests/Makefile
config.status: creating tests/test_cksum_base
config.status: creating interfaces/test_cpp_nc.run
config.status: creating interfaces/test_python_grb.run
config.status: creating interfaces/test_python_nc.run
config.status: creating interfaces/test_ruby_grb.run
config.status: creating interfaces/test_ruby_nc.run
config.status: creating tables/gen_tableheaderfile
config.status: creating tests/pio_cksum_asynch.run
config.status: creating tests/pio_cksum_fpguard.run
config.status: creating tests/pio_cksum_grb2.run
config.status: creating tests/pio_cksum_mpi_fw_at_all.run
config.status: creating tests/pio_cksum_mpi_fw_at_reblock.run
config.status: creating tests/pio_cksum_mpi_fw_ordered.run
config.status: creating tests/pio_cksum_mpinonb.run
config.status: creating tests/pio_cksum_nc.run
config.status: creating tests/pio_cksum_nc2.run
config.status: creating tests/pio_cksum_nc4.run
config.status: creating tests/pio_cksum_writer.run
config.status: creating tests/pio_write.parallel.run
config.status: creating tests/pio_write.run
config.status: creating tests/pio_write_deco2d.parallel.run
config.status: creating tests/pio_write_deco2d.run
config.status: creating tests/pio_write_dist_array.run
config.status: creating tests/test_byteswap.run
config.status: creating tests/test_cdf_const.run
config.status: creating tests/test_cdf_transformation.run
config.status: creating tests/test_cksum_ext.run
config.status: creating tests/test_cksum_grb.run
config.status: creating tests/test_cksum_grb2.run
config.status: creating tests/test_cksum_ieg.run
config.status: creating tests/test_cksum_nc.run
config.status: creating tests/test_cksum_nc2.run
config.status: creating tests/test_cksum_nc4.run
config.status: creating tests/test_cksum_nc_chunk.run
config.status: creating tests/test_cksum_srv.run
config.status: creating tests/test_f2003.run
config.status: creating tests/test_grib.run
config.status: creating tests/test_resource_copy.parallel.run
config.status: creating tests/test_resource_copy.run
config.status: creating tests/test_table.run
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: CDI is configured with the following options:
{
  "build" : {
    "tools" : {
      "CC"       : "gcc",
      "CPP"      : "gcc -E",
      "CPPFLAGS" : "",
      "CFLAGS"   : "-g -O2 -pthread",
      "LDFLAGS"  : "",
      "LIBS"     : "-lpthread -lm -luuid ",
      "FC"       : "no",
      "F77"      : "no",
      "FCFLAGS"  : "",
      "LD"       : "/usr/bin/ld -m elf_x86_64",
      "NM"       : "/usr/bin/nm -B",
      "AR"       : "ar",
      "DLLTOOL"  : "false",
      "OBJDUMP"  : "objdump",
      "STRIP"    : "strip",
      "RANLIB"   : "ranlib",
      "INSTALL"  : "/usr/bin/install -c"
    },
    "libraries" : {
      "threads"    : {
        "lib"      : "",
        "include"  : ""
      },
      "mpi"        : {
        "libs"     : "",
        "cflags"   : "",
        "fclibs"   : "",
        "fcflags"  : ""
      },
      "fdb5"    : {
        "lib"      : "",
        "include"  : ""
      },
      "szlib"    : {
        "lib"      : "",
        "include"  : ""
      },
      "netcdf"   : {
        "lib"      : "",
        "include"  : ""
      },
      "eccodes" : {
        "lib"      : "",
        "include"  : ""
      }
    },
    "platform" : {
      "SYSTEM_TYPE" : "x86_64-pc-linux-gnu"
    }
  },
  "features" : {
    "enable_cdi_lib" : true,
    "grib"           : "yes",
    "cgribex"        : "yes",
    "service"        : "yes",
    "extra"          : "yes",
    "ieg"            : "yes",
    "enable_mpi"     : false,
    "parallel_nc4"   : 0,
    "enable_python"  : false,
    "enable_ruby"    : false,
    "across"         : "yes"
  }
}
configure:

  Configuration completed.

    You can now run 'make' to compile the CDI package and 'make install' to install it afterwards.

make: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
/bin/sh /scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/config/missing ruby ../interfaces/f2003/bindGen.rb cdi.h mo_cdi.f90
Error: value 'int' of constant 'CDI_SIZE_TYPE' is not an integer literal
Warning: Unrecognized line 'typedef CDI_SIZE_TYPE int;'
Warning: Unrecognized line 'extern "C" {'
Warning: Unrecognized line 'enum {'
Warning: Unrecognized line '  SUBTYPE_TILES                   = 0'
Warning: Unrecognized line '};'
Warning: Unrecognized line 'typedef struct  {'
Warning: Unrecognized line '  int nAND;'
Warning: Unrecognized line '  int key_value_pairs[2][MAX_KV_PAIRS_MATCH];'
Warning: Unrecognized line '} subtype_query_t;'
Error: type of argument ' const char **filename' to function cdiGetProtocol() is not supported
Error: type of argument ' void *data' to function streamReadVarPart() is not supported
Error: type of argument ' void *data' to function streamReadVarSlicePart() is not supported
Error: Can't translate return type 'void *  ' of function stream_get_pointer()
Error: Can't translate return type 'void *  ' of function stream_get_vlist_pointer()
Error: type of argument 'void *streamPtr' to function pstreamInqField() is not supported
Error: type of argument ' off_t *bignum' to function streamInqGRIBinfo() is not supported
Error: type of argument ' FILE *stream' to function cdiIterator_print() is not supported
Error: type of argument 'void *vlistPtr' to function pvlistInqFlag() is not supported
Error: type of argument ' char *xcvals[]' to function gridInqXCvals() is not supported
Error: type of argument ' char *ycvals[]' to function gridInqYCvals() is not supported
Error: type of argument ' const char *cvals[]' to function zaxisDefCvals() is not supported
Error: type of argument ' char ***clevels' to function zaxisInqCVals() is not supported
Error: type of argument 'FILE *ptfp' to function tableFWriteC() is not supported
Error: Can't translate return type 'subtype_query_t ' of function keyValuePair()
Error: Can't translate return type 'subtype_query_t ' of function matchAND()
Error: type of argument ' subtype_query_t criterion' to function subtypeInqSubEntry() is not supported
Warning: Unrecognized line '}'
Warning: Unrecognized line 'extern "C" {'
Warning: Unrecognized line 'typedef struct'
Warning: Unrecognized line '{'
Warning: Unrecognized line '  int numEntries;'
Warning: Unrecognized line '  int numNames;'
Warning: Unrecognized line '  bool *namesFound;'
Warning: Unrecognized line '  char **names;'
Warning: Unrecognized line '  int numCellidx;'
Warning: Unrecognized line '  bool *cellidxFound;'
Warning: Unrecognized line '  size_t *cellidx;'
Warning: Unrecognized line '  int numLevidx;'
Warning: Unrecognized line '  bool *levidxFound;'
Warning: Unrecognized line '  int *levidx;'
Warning: Unrecognized line '  int numStepidx;'
Warning: Unrecognized line '  bool *stepidxFound;'
Warning: Unrecognized line '  int *stepidx;'
Warning: Unrecognized line '} CdiQuery;'
Error: Can't translate return type 'CdiQuery *' of function cdiQueryCreate()
Error: Can't translate return type 'CdiQuery *' of function cdiQueryClone()
Error: type of argument 'CdiQuery *query' to function cdiQueryDelete() is not supported
Error: type of argument 'CdiQuery *query' to function cdiQuerySetNames() is not supported
Error: type of argument 'CdiQuery *query' to function cdiQuerySetCellidx() is not supported
Error: type of argument 'CdiQuery *query' to function cdiQuerySetLevidx() is not supported
Error: type of argument 'CdiQuery *query' to function cdiQuerySetStepidx() is not supported
Error: type of argument 'const CdiQuery *query' to function cdiQueryGetCellidx() is not supported
Error: type of argument 'CdiQuery *query' to function cdiQueryName() is not supported
Error: type of argument 'CdiQuery *query' to function cdiQueryCellidx() is not supported
Error: type of argument 'CdiQuery *query' to function cdiQueryLevidx() is not supported
Error: type of argument 'CdiQuery *query' to function cdiQueryStepidx() is not supported
Error: type of argument 'const CdiQuery *query' to function cdiQueryNumNames() is not supported
Error: type of argument 'const CdiQuery *query' to function cdiQueryNumCellidx() is not supported
Error: type of argument 'const CdiQuery *query' to function cdiQueryNumStepidx() is not supported
Error: type of argument 'const CdiQuery *query' to function cdiQueryNumEntries() is not supported
Error: type of argument 'const CdiQuery *query' to function cdiQueryNumEntriesFound() is not supported
Error: type of argument 'const CdiQuery *query' to function cdiQueryPrint() is not supported
Error: type of argument 'const CdiQuery *query' to function cdiQueryPrintEntriesNotFound() is not supported
Error: type of argument ' CdiQuery *query' to function streamOpenReadQuery() is not supported
Error: type of argument ' CdiDateTime rDateTime' to function taxisDefRdatetime() is not supported
Error: Can't translate return type 'CdiDateTime ' of function taxisInqRdatetime()
Error: type of argument ' CdiDateTime fDateTime' to function taxisDefFdatetime() is not supported
Error: Can't translate return type 'CdiDateTime ' of function taxisInqFdatetime()
Error: type of argument ' CdiDateTime vDateTime' to function taxisDefVdatetime() is not supported
Error: Can't translate return type 'CdiDateTime ' of function taxisInqVdatetime()
Error: type of argument ' CdiDateTime vDateTime_lb' to function taxisDefVdatetimeBounds() is not supported
Error: type of argument ' CdiDateTime *vDateTime_lb' to function taxisInqVdatetimeBounds() is not supported
Warning: Unrecognized line 'struct CDI_GridProjParams'
Warning: Unrecognized line '{'
Warning: Unrecognized line '  double mv;'
Warning: Unrecognized line '  double lon_0;'
Warning: Unrecognized line '  double lat_0;'
Warning: Unrecognized line '  double lat_1;'
Warning: Unrecognized line '  double lat_2;'
Warning: Unrecognized line '  double a;'
Warning: Unrecognized line '  double b;'
Warning: Unrecognized line '  double rf;'
Warning: Unrecognized line '  double xval_0;'
Warning: Unrecognized line '  double yval_0;'
Warning: Unrecognized line '  double x_0;'
Warning: Unrecognized line '  double y_0;'
Warning: Unrecognized line '  double x_SP;'
Warning: Unrecognized line '  double y_SP;'
Warning: Unrecognized line '  int nside;'
Warning: Unrecognized line '  int order;'
Warning: Unrecognized line '};'
Error: type of argument 'struct CDI_GridProjParams *gridProjParams' to function gridProjParamsInit() is not supported
Error: type of argument ' struct CDI_GridProjParams gridProjParams' to function gridDefParamsLCC() is not supported
Error: type of argument ' struct CDI_GridProjParams *gridProjParams' to function gridInqParamsLCC() is not supported
Error: type of argument ' struct CDI_GridProjParams gridProjParams' to function gridDefParamsSTERE() is not supported
Error: type of argument ' struct CDI_GridProjParams *gridProjParams' to function gridInqParamsSTERE() is not supported
Error: type of argument ' struct CDI_GridProjParams gridProjParams' to function gridDefParamsHEALPIX() is not supported
Error: type of argument ' struct CDI_GridProjParams *gridProjParams' to function gridInqParamsHEALPIX() is not supported
Error: Can't translate return type 'extern ' of function int()
Error: Can't translate return type 'extern ' of function int()
Error: Can't translate return type 'extern ' of function int()
Error: Can't translate return type 'extern ' of function int()
Warning: Unrecognized line '}'
make: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
Making distclean in src
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
test -z "" || rm -f 
test -z "libcdi.la  " || rm -f libcdi.la  
rm -rf .libs _libs
test -z "   libcdiresunpack.la" || rm -f    libcdiresunpack.la
rm -f *.o
test -z "make_fint " || rm -f make_fint 
rm -f *.lo
rm -f *.tab.c
test -z "" || rm -f 
test . = "." || test -z "" || rm -f 
rm -f config.h stamp-h1
rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
rm -f ./so_locations
rm -f ./so_locations
rm -f .deps/getline.Po
rm -f ./.deps/async_worker.Plo
rm -f ./.deps/basetime.Plo
rm -f ./.deps/binary.Plo
rm -f ./.deps/calendar.Plo
rm -f ./.deps/cdf.Plo
rm -f ./.deps/cdf_filter.Plo
rm -f ./.deps/cdf_int.Plo
rm -f ./.deps/cdf_lazy_grid.Plo
rm -f ./.deps/cdf_read.Plo
rm -f ./.deps/cdf_records.Plo
rm -f ./.deps/cdf_util.Plo
rm -f ./.deps/cdf_write.Plo
rm -f ./.deps/cdiFortran.Plo
rm -f ./.deps/cdi_across.Plo
rm -f ./.deps/cdi_att.Plo
rm -f ./.deps/cdi_cksum.Plo
rm -f ./.deps/cdi_datetime.Plo
rm -f ./.deps/cdi_error.Plo
rm -f ./.deps/cdi_fdb.Plo
rm -f ./.deps/cdi_int.Plo
rm -f ./.deps/cdi_key.Plo
rm -f ./.deps/cdi_query.Plo
rm -f ./.deps/cdi_util.Plo
rm -f ./.deps/cdipioFortran.Plo
rm -f ./.deps/cgribexlib.Plo
rm -f ./.deps/cksum.Plo
rm -f ./.deps/dmemory.Plo
rm -f ./.deps/error.Plo
rm -f ./.deps/extralib.Plo
rm -f ./.deps/file.Plo
rm -f ./.deps/gaussian_latitudes.Plo
rm -f ./.deps/get_num_missvals.Plo
rm -f ./.deps/grb_read.Plo
rm -f ./.deps/grb_write.Plo
rm -f ./.deps/gribapi.Plo
rm -f ./.deps/gribapi_utilities.Plo
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make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
Making distclean in interfaces
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
Making distclean in python
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make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces/python'
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test -z "test_cpp_nc.run test_python_grb.run test_python_nc.run test_ruby_grb.run test_ruby_nc.run" || rm -f test_cpp_nc.run test_python_grb.run test_python_nc.run test_ruby_grb.run test_ruby_nc.run
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test -z "test-suite.log" || rm -f test-suite.log
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
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Making distclean in app
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Making distclean in examples
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make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples/pio'
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test . = "." || test -z "" || rm -f 
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make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
Making distclean in tests
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test -z "calendar_test1.log cksum_verify.log pio_write.log pio_write_deco2d.log test_byteswap.log test_cdf_const.log test_cdf_transformation.log test_cksum_ext.log test_cksum_grb.log test_cksum_grb2.log test_cksum_ieg.log test_cksum_nc.log test_cksum_nc2.log test_cksum_nc4.log test_cksum_nc_chunk.log test_cksum_srv.log test_f2003.log test_grib.log test_month_adjust.log test_resource_copy.log test_table.log pio_cksum_asynch.log pio_cksum_fpguard.log pio_cksum_grb2.log pio_cksum_mpi_fw_at_all.log pio_cksum_mpi_fw_at_reblock.log pio_cksum_mpi_fw_ordered.log pio_cksum_mpinonb.log pio_cksum_nc.log pio_cksum_nc2.log pio_cksum_nc4.log pio_cksum_writer.log pio_write.parallel.log pio_write_deco2d.parallel.log pio_write_dist_array.log test_resource_copy.parallel.log" || rm -f calendar_test1.log cksum_verify.log pio_write.log pio_write_deco2d.log test_byteswap.log test_cdf_const.log test_cdf_transformation.log test_cksum_ext.log test_cksum_grb.log test_cksum_grb2.log test_cksum_ieg.log test_cksum_nc.log test_cksum_nc2.log test_cksum_nc4.log test_cksum_nc_chunk.log test_cksum_srv.log test_f2003.log test_grib.log test_month_adjust.log test_resource_copy.log test_table.log pio_cksum_asynch.log pio_cksum_fpguard.log pio_cksum_grb2.log pio_cksum_mpi_fw_at_all.log pio_cksum_mpi_fw_at_reblock.log pio_cksum_mpi_fw_ordered.log pio_cksum_mpinonb.log pio_cksum_nc.log pio_cksum_nc2.log pio_cksum_nc4.log pio_cksum_writer.log pio_write.parallel.log pio_write_deco2d.parallel.log pio_write_dist_array.log test_resource_copy.parallel.log
rm -f *.lo
rm -f *.tab.c
test -z "test_cksum_base pio_cksum_asynch.run pio_cksum_fpguard.run pio_cksum_grb2.run pio_cksum_mpi_fw_at_all.run pio_cksum_mpi_fw_at_reblock.run pio_cksum_mpi_fw_ordered.run pio_cksum_mpinonb.run pio_cksum_nc.run pio_cksum_nc2.run pio_cksum_nc4.run pio_cksum_writer.run pio_write.parallel.run pio_write.run pio_write_deco2d.parallel.run pio_write_deco2d.run pio_write_dist_array.run test_byteswap.run test_cdf_const.run test_cdf_transformation.run test_cksum_ext.run test_cksum_grb.run test_cksum_grb2.run test_cksum_ieg.run test_cksum_nc.run test_cksum_nc2.run test_cksum_nc4.run test_cksum_nc_chunk.run test_cksum_srv.run test_f2003.run test_grib.run test_resource_copy.parallel.run test_resource_copy.run test_table.run" || rm -f test_cksum_base pio_cksum_asynch.run pio_cksum_fpguard.run pio_cksum_grb2.run pio_cksum_mpi_fw_at_all.run pio_cksum_mpi_fw_at_reblock.run pio_cksum_mpi_fw_ordered.run pio_cksum_mpinonb.run pio_cksum_nc.run pio_cksum_nc2.run pio_cksum_nc4.run pio_cksum_writer.run pio_write.parallel.run pio_write.run pio_write_deco2d.parallel.run pio_write_deco2d.run pio_write_dist_array.run test_byteswap.run test_cdf_const.run test_cdf_transformation.run test_cksum_ext.run test_cksum_grb.run test_cksum_grb2.run test_cksum_ieg.run test_cksum_nc.run test_cksum_nc2.run test_cksum_nc4.run test_cksum_nc_chunk.run test_cksum_srv.run test_f2003.run test_grib.run test_resource_copy.parallel.run test_resource_copy.run test_table.run
test -z "calendar_test1.trs cksum_verify.trs pio_write.trs pio_write_deco2d.trs test_byteswap.trs test_cdf_const.trs test_cdf_transformation.trs test_cksum_ext.trs test_cksum_grb.trs test_cksum_grb2.trs test_cksum_ieg.trs test_cksum_nc.trs test_cksum_nc2.trs test_cksum_nc4.trs test_cksum_nc_chunk.trs test_cksum_srv.trs test_f2003.trs test_grib.trs test_month_adjust.trs test_resource_copy.trs test_table.trs pio_cksum_asynch.trs pio_cksum_fpguard.trs pio_cksum_grb2.trs pio_cksum_mpi_fw_at_all.trs pio_cksum_mpi_fw_at_reblock.trs pio_cksum_mpi_fw_ordered.trs pio_cksum_mpinonb.trs pio_cksum_nc.trs pio_cksum_nc2.trs pio_cksum_nc4.trs pio_cksum_writer.trs pio_write.parallel.trs pio_write_deco2d.parallel.trs pio_write_dist_array.trs test_resource_copy.parallel.trs" || rm -f calendar_test1.trs cksum_verify.trs pio_write.trs pio_write_deco2d.trs test_byteswap.trs test_cdf_const.trs test_cdf_transformation.trs test_cksum_ext.trs test_cksum_grb.trs test_cksum_grb2.trs test_cksum_ieg.trs test_cksum_nc.trs test_cksum_nc2.trs test_cksum_nc4.trs test_cksum_nc_chunk.trs test_cksum_srv.trs test_f2003.trs test_grib.trs test_month_adjust.trs test_resource_copy.trs test_table.trs pio_cksum_asynch.trs pio_cksum_fpguard.trs pio_cksum_grb2.trs pio_cksum_mpi_fw_at_all.trs pio_cksum_mpi_fw_at_reblock.trs pio_cksum_mpi_fw_ordered.trs pio_cksum_mpinonb.trs pio_cksum_nc.trs pio_cksum_nc2.trs pio_cksum_nc4.trs pio_cksum_writer.trs pio_write.parallel.trs pio_write_deco2d.parallel.trs pio_write_dist_array.trs test_resource_copy.parallel.trs
rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
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test . = "." || test -z "" || rm -f 
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make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi'
rm -rf .libs _libs
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test -z "cdi.settings src/cmake/cdi/cdi-config-version.cmake src/cmake/cdi/cdi-config.cmake src/pkgconfig/cdi.pc src/pkgconfig/cdi_f2003.pc src/pkgconfig/cdipio.pc tables/gen_tableheaderfile" || rm -f cdi.settings src/cmake/cdi/cdi-config-version.cmake src/cmake/cdi/cdi-config.cmake src/pkgconfig/cdi.pc src/pkgconfig/cdi_f2003.pc src/pkgconfig/cdipio.pc tables/gen_tableheaderfile
rm -f libtool config.lt
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test . = "." || test -z "" || rm -f 
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi'
rm -f config.status config.cache config.log configure.lineno config.status.lineno
rm -f Makefile
configure: WARNING: unrecognized options: --without-grib_api
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
configure: setting up libtool
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... 
yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking whether mpicc understands -c and -o together... yes
checking dependency style of mpicc... gcc3
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checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
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checking for objdump... objdump
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checking command to parse /usr/bin/nm -B output from mpicc object... ok
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checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
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checking how to run the C preprocessor... mpicc -E
checking for ANSI C header files... 
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checking for objdir... .libs
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checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for mpicc option to accept ISO C99... none needed
checking For conformance to POSIX.1-2001.... yes
checking for C/C++ restrict keyword... __restrict
checking whether we are using the GNU Fortran compiler... yes
checking whether mpif90 accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for mpif90 option to produce PIC... -fPIC
checking if mpif90 PIC flag -fPIC works... yes
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checking if mpif90 supports -c -o file.o... yes
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checking whether the mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking whether the Fortran compiler works... yes
checking for flag to alter module search path... 
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checking for Fortran compiler flag needed to specify search paths for the "INCLUDE" statement... -I
checking for conftest_module module file name... conftest_module.mod
checking for suffix of module files... mod
checking how to define symbols for preprocessed Fortran... -D
checking if Fortran compiler can handle complex CHARACTER interoperability... yes
configure: setting up libtool
configure: creating ./config.lt
config.lt: creating libtool
checking whether libtool can link C programs... yes
checking whether libtool can link Fortran programs... yes
checking whether byte ordering is bigendian... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for struct stat.st_blksize... yes
checking for malloc.h... yes
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checking size parameter type for backtrace()... int
checking for library containing backtrace... 
none required
checking for mallinfo... yes
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checking for getline... yes
checking whether isnan is declared... yes
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checking whether PAGESIZE is declared... no
checking whether PAGE_SIZE is declared... no
checking whether _SC_PAGE_SIZE is declared... yes
checking whether _SC_PAGESIZE is declared... yes
checking whether _PC_REC_XFER_ALIGN is declared... yes
checking whether POSIX_REC_XFER_ALIGN is declared... no
checking for library containing floor... -lm
checking whether __builtin_ctz is declared... yes
checking multithreading... suppressed
checking for fdb5 library... suppressed
checking for szlib library... suppressed
checking for netcdf.h... yes
checking for library containing nc_open... none required
checking for nc-config... no
configure: WARNING: Could not find nc-config! go on with default configuration
checking netcdf's OpenDAP support... (cached) no
checking netcdf's Zarr support... no
checking netcdf's nc2 support... (cached) yes
checking netcdf's nc4 support... (cached) yes
checking netcdf's nc4/hdf5 support... (cached) no
checking netcdf's nc4/szlib support... no
checking for grib_api.h... yes
checking for library containing grib_get_message... none required
checking for GRIB support... yes
checking for ACROSS support... no
checking for CGRIBEX support... yes
checking for SERVICE support... yes
checking for EXTRA support... yes
checking for IEG support... yes
checking for building an additional static CDI binary... no
checking for HIRLAM extensions... no
checking for grib_get_length... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating app/Makefile
config.status: creating cdi.settings
config.status: creating examples/Makefile
config.status: creating examples/pio/Makefile
config.status: creating interfaces/Makefile
config.status: creating interfaces/python/Makefile
config.status: creating src/Makefile
config.status: creating src/cmake/cdi/cdi-config-version.cmake
config.status: creating src/cmake/cdi/cdi-config.cmake
config.status: creating src/pkgconfig/cdi.pc
config.status: creating src/pkgconfig/cdi_f2003.pc
config.status: creating src/pkgconfig/cdipio.pc
config.status: creating tests/Makefile
config.status: creating tests/test_cksum_base
config.status: creating interfaces/test_cpp_nc.run
config.status: creating interfaces/test_python_grb.run
config.status: creating interfaces/test_python_nc.run
config.status: creating interfaces/test_ruby_grb.run
config.status: creating interfaces/test_ruby_nc.run
config.status: creating tables/gen_tableheaderfile
config.status: creating tests/pio_cksum_asynch.run
config.status: creating tests/pio_cksum_fpguard.run
config.status: creating tests/pio_cksum_grb2.run
config.status: creating tests/pio_cksum_mpi_fw_at_all.run
config.status: creating tests/pio_cksum_mpi_fw_at_reblock.run
config.status: creating tests/pio_cksum_mpi_fw_ordered.run
config.status: creating tests/pio_cksum_mpinonb.run
config.status: creating tests/pio_cksum_nc.run
config.status: creating tests/pio_cksum_nc2.run
config.status: creating tests/pio_cksum_nc4.run
config.status: creating tests/pio_cksum_writer.run
config.status: creating tests/pio_write.parallel.run
config.status: creating tests/pio_write.run
config.status: creating tests/pio_write_deco2d.parallel.run
config.status: creating tests/pio_write_deco2d.run
config.status: creating tests/pio_write_dist_array.run
config.status: creating tests/test_byteswap.run
config.status: creating tests/test_cdf_const.run
config.status: creating tests/test_cdf_transformation.run
config.status: creating tests/test_cksum_ext.run
config.status: creating tests/test_cksum_grb.run
config.status: creating tests/test_cksum_grb2.run
config.status: creating tests/test_cksum_ieg.run
config.status: creating tests/test_cksum_nc.run
config.status: creating tests/test_cksum_nc2.run
config.status: creating tests/test_cksum_nc4.run
config.status: creating tests/test_cksum_nc_chunk.run
config.status: creating tests/test_cksum_srv.run
config.status: creating tests/test_f2003.run
config.status: creating tests/test_grib.run
config.status: creating tests/test_resource_copy.parallel.run
config.status: creating tests/test_resource_copy.run
config.status: creating tests/test_table.run
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --without-grib_api
configure: CDI is configured with the following options:
{
  "build" : {
    "tools" : {
      "CC"       : "mpicc",
      "CPP"      : "mpicc -E",
      "CPPFLAGS" : "-I/sw/spack-levante/netcdf-c-4.8.1-6qheqr/include -I/sw/spack-levante/eccodes-2.21.0-4ywkk4/include",
      "CFLAGS"   : "-g -gdwarf-4 -march=native -mpc64 -O2",
      "LDFLAGS"  : "-L/sw/spack-levante/netcdf-c-4.8.1-6qheqr/lib -L/sw/spack-levante/eccodes-2.21.0-4ywkk4/lib64",
      "LIBS"     : "-lm  -Wl,--disable-new-dtags -Wl,--as-needed -leccodes -lnetcdf",
      "FC"       : "mpif90",
      "F77"      : "no",
      "FCFLAGS"  : "-fmodule-private -fimplicit-none -fmax-identifier-length=63 -Wall -Wcharacter-truncation -Wconversion -Wunderflow -Wunused-parameter -Wno-surprising -fall-intrinsics -g -march=native -mpc64 -fbacktrace -fbounds-check -fstack-protector-all -finit-real=nan -finit-integer=-2147483648 -finit-character=127 -O2 -std=f2008",
      "LD"       : "/usr/bin/ld -m elf_x86_64",
      "NM"       : "/usr/bin/nm -B",
      "AR"       : "ar",
      "DLLTOOL"  : "false",
      "OBJDUMP"  : "objdump",
      "STRIP"    : "strip",
      "RANLIB"   : "ranlib",
      "INSTALL"  : "/usr/bin/install -c"
    },
    "libraries" : {
      "threads"    : {
        "lib"      : "",
        "include"  : ""
      },
      "mpi"        : {
        "libs"     : "",
        "cflags"   : "",
        "fclibs"   : "",
        "fcflags"  : ""
      },
      "fdb5"    : {
        "lib"      : "",
        "include"  : ""
      },
      "szlib"    : {
        "lib"      : "",
        "include"  : ""
      },
      "netcdf"   : {
        "lib"      : " -lnetcdf",
        "include"  : ""
      },
      "eccodes" : {
        "lib"      : "",
        "include"  : ""
      }
    },
    "platform" : {
      "SYSTEM_TYPE" : "x86_64-pc-linux-gnu"
    }
  },
  "features" : {
    "enable_cdi_lib" : true,
    "grib"           : "yes",
    "cgribex"        : "yes",
    "service"        : "yes",
    "extra"          : "yes",
    "ieg"            : "yes",
    "enable_mpi"     : false,
    "parallel_nc4"   : 0,
    "enable_python"  : false,
    "enable_ruby"    : false,
    "across"         : "no"
  }
}
configure:

  Configuration completed.

    You can now run 'make' to compile the CDI package and 'make install' to install it afterwards.

Making all in src
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
make  all-am
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
  CC       calendar.lo
  CC       cdf_filter.lo
  CC       cdf_int.lo
  CC       cdf_lazy_grid.lo
  CC       cdf.lo
  CC       basetime.lo
  CC       async_worker.lo
  CC       binary.lo
  CC       cdf_read.lo
  CC       cdf_records.lo
  CC       cdf_util.lo
  CC       cdf_write.lo
  CC       cdi_across.lo
  CC       cdi_att.lo
  CC       cdi_cksum.lo
  CC       cdi_datetime.lo
  CC       cdi_error.lo
  CC       cdi_fdb.lo
  CC       cdi_int.lo
  CC       cdi_key.lo
  CC       cdi_query.lo
  CC       cdi_util.lo
  CC       cgribexlib.lo
  CC       cksum.lo
  CC       dmemory.lo
  CC       error.lo
  CC       extralib.lo
  CC       file.lo
  CC       get_num_missvals.lo
  CC       gaussian_latitudes.lo
  CC       grb_read.lo
  CC       grb_write.lo
  CC       gribapi.lo
  CC       grid.lo
  CC       input_file.lo
  CC       ieglib.lo
  CC       institution.lo
  CC       iterator_grib.lo
  CC       iterator_fallback.lo
  CC       iterator.lo
  CC       julian_date.lo
  CC       model.lo
  CC       namespace.lo
  CC       referenceCounting.lo
  CC       resource_handle.lo
  CC       serialize.lo
  CC       servicelib.lo
  CC       stream.lo
  CC       stream_cdf_i.lo
  CC       stream_cdf_o.lo
  CC       stream_cdf_time.lo
  CC       stream_cgribex.lo
  CC       stream_ext.lo
  CC       stream_grb.lo
  CC       stream_ieg.lo
  CC       stream_read.lo
  CC       stream_record.lo
  CC       stream_scan.lo
  CC       stream_var.lo
  CC       stream_srv.lo
  CC       stream_write.lo
  CC       subtype.lo
  CC       swap.lo
  CC       table.lo
  CC       taxis.lo
  CC       tsteps.lo
  CC       util.lo
  CC       varscan.lo
  CC       version.lo
  CC       vlist.lo
  CC       vlist_var.lo
  CC       vlist_var_key.lo
  CC       vlist_var_pack.lo
  CC       zaxis.lo
  CC       gribapi_utilities.lo
  CC       stream_gribapi.lo
  FC       mo_cdi.lo
  CCLD     libcdi.la
  FCLD     libcdi_f2003.la
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
Making all in interfaces
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
Making all in python
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces/python'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces/python'
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
Making all in app
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/app'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/app'
Making all in examples
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
Making all in pio
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples/pio'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples/pio'
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
Making all in tests
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi'
make[1]: Nothing to be done for 'all-am'.
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi'
Making check in src
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
make  libcdiresunpack.la
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
  CC       resource_unpack.lo
  CCLD     libcdiresunpack.la
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/src'
Making check in interfaces
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
Making check in python
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces/python'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces/python'
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
make  
make[3]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
Making all in python
make[4]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces/python'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces/python'
make[4]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
make[4]: Nothing to be done for 'all-am'.
make[4]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
make[3]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
make  check-TESTS
make[3]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
make[4]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
SKIP: test_ruby_grb.run
SKIP: test_python_grb.run
SKIP: test_python_nc.run
SKIP: test_ruby_nc.run
SKIP: test_cpp_nc.run
============================================================================
Testsuite summary for cdi 2.5.2
============================================================================
# TOTAL: 5
# PASS:  0
# SKIP:  5
# XFAIL: 0
# FAIL:  0
# XPASS: 0
# ERROR: 0
============================================================================
make[4]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
make[3]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/interfaces'
Making check in app
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/app'
make  cdi
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/app'
  CC       cdi.o
  CC       printinfo.o
  CCLD     cdi
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/app'
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/app'
Making check in examples
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
Making check in pio
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples/pio'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples/pio'
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
make  cdi_write_const cdi_read_f2003 cdi_write_f2003
make[3]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
  FC       cdi_write_f2003.o
  CC       cdi_write_const.o
  FC       cdi_read_f2003.o
  FCLD     cdi_write_f2003
  CCLD     cdi_write_const
  FCLD     cdi_read_f2003
make[3]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/examples'
Making check in tests
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
make  calendar_test1 cksum_read cksum_verify cksum_write cksum_write_chunk pio_write pio_write_deco2d test_byteswap test_grib test_month_adjust test_resource_copy test_table test_cdf_read test_cdf_write 
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
  CC       var_cksum.o
  CC       ensure_array_size.o
  CC       cksum_read.o
  CC       calendar_test1.o
  CC       simple_model_helper.o
  CC       cksum_verify.o
  CC       cksum_write.o
  CC       stream_cksum.o
  CC       cksum_write_chunk.o
  CC       pio_write.o
  CC       pio_write_setup_grid.o
  CC       simple_model.o
  CC       deco2d_model.o
  CC       test_byteswap.o
  CC       test_grib.o
  CC       test_month_adjust.o
  CC       test_resource_copy.o
  CC       test_cdf_read.o
  CC       test_table.o
  CC       test_cdf_write.o
  CCLD     calendar_test1
  CCLD     cksum_read
  CCLD     cksum_verify
  CCLD     cksum_write
  CCLD     pio_write
  CCLD     test_byteswap
  CCLD     cksum_write_chunk
  CCLD     pio_write_deco2d
  CCLD     test_grib
  CCLD     test_month_adjust
  CCLD     test_resource_copy
  CCLD     test_table
  CCLD     test_cdf_write
  CCLD     test_cdf_read
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
make  check-TESTS
make[2]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
make[3]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
PASS: calendar_test1
PASS: cksum_verify
PASS: test_byteswap.run
PASS: test_cdf_transformation.run
PASS: test_cksum_ext.run
PASS: test_cksum_grb.run
PASS: test_cksum_ieg.run
PASS: test_cdf_const.run
PASS: test_cksum_nc2.run
PASS: test_cksum_nc.run
PASS: pio_write_deco2d.run
PASS: test_cksum_nc4.run
PASS: pio_write.run
PASS: test_cksum_grb2.run
PASS: test_month_adjust
PASS: test_cksum_nc_chunk.run
PASS: test_grib.run
SKIP: pio_cksum_asynch.run
PASS: test_cksum_srv.run
PASS: test_table.run
SKIP: pio_cksum_fpguard.run
PASS: test_resource_copy.run
PASS: test_f2003.run
SKIP: pio_cksum_grb2.run
SKIP: pio_cksum_mpi_fw_at_all.run
SKIP: pio_cksum_mpi_fw_at_reblock.run
SKIP: pio_cksum_mpi_fw_ordered.run
SKIP: pio_cksum_mpinonb.run
SKIP: pio_cksum_nc.run
SKIP: pio_cksum_nc2.run
SKIP: pio_cksum_nc4.run
SKIP: pio_cksum_writer.run
SKIP: pio_write.parallel.run
SKIP: pio_write_deco2d.parallel.run
SKIP: pio_write_dist_array.run
SKIP: test_resource_copy.parallel.run
============================================================================
Testsuite summary for cdi 2.5.2
============================================================================
# TOTAL: 36
# PASS:  21
# SKIP:  15
# XFAIL: 0
# FAIL:  0
# XPASS: 0
# ERROR: 0
============================================================================
make[3]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
make[2]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi/tests'
make[1]: Entering directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi'
make[1]: Nothing to be done for 'check-am'.
make[1]: Leaving directory '/scratch/hpc-ci/m214003/static/00701183/mpim-sw/libcdi'
Slurm job ci-701183_1742808983 state: COMPLETED
section_end:1742809189:step_script
section_start:1742809189:cleanup_file_variables
Cleaning up project directory and file based variables
section_end:1742809189:cleanup_file_variables
Job succeeded