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Commit e102853e authored by Uwe Schulzweida's avatar Uwe Schulzweida
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added function cdf_def_vct_cf()

parent bae85738
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src/cdi_int.c
View file @ e102853e
......@@ -340,7 +340,7 @@ void cdiInitialize(void)
envString = getenv("CDI_CONVENTION");
if ( envString )
{
if ( strcmp(envString, "CF") == 0 )
if ( strcmp(envString, "CF") == 0 || strcmp(envString, "cf") == 0 )
{
cdiConvention = CDI_CONVENTION_CF;
if ( CDI_Debug )
......
src/stream_cdf.c
View file @ e102853e
......@@ -943,20 +943,17 @@ void cdfDefTimeUnits(char *unitstr, taxis_t* taxis0, taxis_t* taxis)
}
else
{
int year, month, day, hour, minute, second;
int rdate, rtime;
int timeunit;
timeunit = taxis->unit;
int timeunit = taxis->unit;
if ( timeunit == -1 ) timeunit = TUNIT_HOUR;
rdate = taxis->rdate;
rtime = taxis->rtime;
int rdate = taxis->rdate;
int rtime = taxis->rtime;
if ( rdate == -1 )
{
rdate = taxis->vdate;
rtime = taxis->vtime;
}
int year, month, day, hour, minute, second;
cdiDecodeDate(rdate, &year, &month, &day);
cdiDecodeTime(rtime, &hour, &minute, &second);
......@@ -1010,7 +1007,6 @@ void cdfDefCalendar(int fileID, int ncvarid, int calendar)
static
void cdfDefTime(stream_t* streamptr)
{
int fileID;
int time_varid;
int time_dimid;
int time_bndsid = -1;
......@@ -1018,18 +1014,15 @@ void cdfDefTime(stream_t* streamptr)
char tmpstr[CDI_MAX_NAME];
char default_name[] = "time";
char* taxis_name = default_name;
size_t len;
taxis_t* taxis;
if ( streamptr->basetime.ncvarid != UNDEFID ) return;
fileID = streamptr->fileID;
int fileID = streamptr->fileID;
if ( streamptr->ncmode == 0 ) streamptr->ncmode = 1;
if ( streamptr->ncmode == 2 ) cdf_redef(fileID);
taxis = &streamptr->tsteps[0].taxis;
taxis_t *taxis = &streamptr->tsteps[0].taxis;
if ( taxis->name && taxis->name[0] ) taxis_name = taxis->name;
......@@ -1054,7 +1047,7 @@ void cdfDefTime(stream_t* streamptr)
cdfDefTimeUnits(unitstr, &streamptr->tsteps[0].taxis, taxis);
len = strlen(unitstr);
size_t len = strlen(unitstr);
if ( len )
{
cdf_put_att_text(fileID, time_varid, "units", len, unitstr);
......@@ -2287,17 +2280,13 @@ void cdfDefUnstructured(stream_t *streamptr, int gridID)
streamptr->ncavarID[gridindex] = ncavarid;
}
static
void cdfDefVCT(stream_t *streamptr, int zaxisID)
void cdf_def_vct_echam(stream_t *streamptr, int zaxisID)
{
int type;
int type = zaxisInqType(zaxisID);
type = zaxisInqType(zaxisID);
if ( type == ZAXIS_HYBRID || type == ZAXIS_HYBRID_HALF )
{
int i;
int fileID;
int ilev = zaxisInqVctSize(zaxisID)/2;
int mlev = ilev - 1;
size_t start;
......@@ -2320,7 +2309,7 @@ void cdfDefVCT(stream_t *streamptr, int zaxisID)
return;
}
fileID = streamptr->fileID;
int fileID = streamptr->fileID;
if ( streamptr->ncmode == 2 ) cdf_redef(fileID);
......@@ -2362,7 +2351,7 @@ void cdfDefVCT(stream_t *streamptr, int zaxisID)
cdf_put_var_double(fileID, hyaiid, vctptr);
cdf_put_var_double(fileID, hybiid, vctptr+ilev);
for ( i = 0; i < mlev; i++ )
for ( int i = 0; i < mlev; i++ )
{
start = (size_t)i;
mval = (vctptr[i] + vctptr[i+1]) * 0.5;
......@@ -2374,7 +2363,99 @@ void cdfDefVCT(stream_t *streamptr, int zaxisID)
}
static
void cdfDefZaxisHybridEcham(stream_t *streamptr, int type, int ncvarid, int zaxisID, int zaxisindex, int xtype, size_t dimlen, int *dimID, char *axisname)
void cdf_def_vct_cf(stream_t *streamptr, int zaxisID, int nclevID, int ncbndsID)
{
int type = zaxisInqType(zaxisID);
if ( type == ZAXIS_HYBRID || type == ZAXIS_HYBRID_HALF )
{
int ilev = zaxisInqVctSize(zaxisID)/2;
int mlev = ilev - 1;
int hyaiid, hybiid, hyamid, hybmid;
char tmpname[CDI_MAX_NAME];
if ( streamptr->vct.ilev > 0 )
{
if ( streamptr->vct.ilev != ilev )
Error("more than one VCT for each file unsupported!");
return;
}
if ( ilev == 0 )
{
Warning("VCT missing");
return;
}
int fileID = streamptr->fileID;
if ( streamptr->ncmode == 2 ) cdf_redef(fileID);
int dimIDs[2];
dimIDs[0] = nclevID;
dimIDs[1] = ncbndsID;
streamptr->vct.mlev = mlev;
streamptr->vct.ilev = ilev;
streamptr->vct.mlevID = nclevID;
streamptr->vct.ilevID = nclevID;
cdf_def_var(fileID, "ap", NC_DOUBLE, 1, dimIDs, &hyamid);
cdf_def_var(fileID, "b", NC_DOUBLE, 1, dimIDs, &hybmid);
cdf_def_var(fileID, "ap_bnds", NC_DOUBLE, 2, dimIDs, &hyaiid);
cdf_def_var(fileID, "b_bnds", NC_DOUBLE, 2, dimIDs, &hybiid);
strcpy(tmpname, "vertical coordinate formula term: ap(k)");
cdf_put_att_text(fileID, hyamid, "long_name", strlen(tmpname), tmpname);
strcpy(tmpname, "Pa");
cdf_put_att_text(fileID, hyamid, "units", strlen(tmpname), tmpname);
strcpy(tmpname, "vertical coordinate formula term: b(k)");
cdf_put_att_text(fileID, hybmid, "long_name", strlen(tmpname), tmpname);
strcpy(tmpname, "1");
cdf_put_att_text(fileID, hybmid, "units", strlen(tmpname), tmpname);
strcpy(tmpname, "vertical coordinate formula term: ap(k+1/2)");
cdf_put_att_text(fileID, hyaiid, "long_name", strlen(tmpname), tmpname);
strcpy(tmpname, "Pa");
cdf_put_att_text(fileID, hyaiid, "units", strlen(tmpname), tmpname);
strcpy(tmpname, "vertical coordinate formula term: b(k+1/2)");
cdf_put_att_text(fileID, hybiid, "long_name", strlen(tmpname), tmpname);
strcpy(tmpname, "1");
cdf_put_att_text(fileID, hybiid, "units", strlen(tmpname), tmpname);
cdf_enddef(fileID);
streamptr->ncmode = 2;
const double *vctptr = zaxisInqVctPtr(zaxisID);
double *tarray = (double *) malloc(2*ilev*sizeof(double));
for ( int i = 0; i < mlev; ++i )
{
tarray[2*i ] = vctptr[i+1];
tarray[2*i+1] = vctptr[i];
}
cdf_put_var_double(fileID, hyaiid, tarray);
for ( int i = 0; i < mlev; ++i )
{
tarray[2*i ] = vctptr[ilev+i+1];
tarray[2*i+1] = vctptr[ilev+i];
}
cdf_put_var_double(fileID, hybiid, tarray);
for ( int i = 0; i < mlev; ++i )
tarray[i] = (vctptr[i] + vctptr[i+1]) * 0.5;
cdf_put_var_double(fileID, hyamid, tarray);
for ( int i = 0; i < mlev; ++i )
tarray[i] = (vctptr[ilev+i] + vctptr[ilev+i+1]) * 0.5;
cdf_put_var_double(fileID, hybmid, tarray);
free(tarray);
}
}
static
void cdf_def_zaxis_hybrid_echam(stream_t *streamptr, int type, int ncvarid, int zaxisID, int zaxisindex, int xtype, size_t dimlen, int *dimID, char *axisname)
{
char tmpname[CDI_MAX_NAME];
int fileID = streamptr->fileID;
......@@ -2416,7 +2497,7 @@ void cdfDefZaxisHybridEcham(stream_t *streamptr, int type, int ncvarid, int zaxi
cdf_put_var_double(fileID, ncvarid, zaxisInqLevelsPtr(zaxisID));
cdfDefVCT(streamptr, zaxisID);
cdf_def_vct_echam(streamptr, zaxisID);
if ( *dimID == UNDEFID )
{
......@@ -2428,20 +2509,22 @@ void cdfDefZaxisHybridEcham(stream_t *streamptr, int type, int ncvarid, int zaxi
}
static
void cdfDefZaxisHybridCF(stream_t *streamptr, int type, int ncvarid, int zaxisID, int zaxisindex, int xtype, size_t dimlen, int *dimID, char *axisname)
void cdf_def_zaxis_hybrid_cf(stream_t *streamptr, int type, int ncvarid, int zaxisID, int zaxisindex, int xtype, size_t dimlen, int *dimID, char *axisname)
{
char tmpname[CDI_MAX_NAME];
int fileID = streamptr->fileID;
int fileID = streamptr->fileID;
if ( streamptr->ncmode == 2 ) cdf_redef(fileID);
strcpy(axisname, "lev");
cdf_def_dim(fileID, axisname, dimlen, dimID);
cdf_def_var(fileID, axisname, (nc_type) xtype, 1, dimID, &ncvarid);
strcpy(tmpname, "atmosphere_hybrid_sigma_pressure_coordinate");
cdf_put_att_text(fileID, ncvarid, "standard_name", strlen(tmpname), tmpname);
strcpy(tmpname, "hybrid level at layer midpoints");
strcpy(tmpname, "hybrid sigma pressure coordinate");
cdf_put_att_text(fileID, ncvarid, "long_name", strlen(tmpname), tmpname);
strcpy(tmpname, "p = ap + b*ps");
cdf_put_att_text(fileID, ncvarid, "formula", strlen(tmpname), tmpname);
......@@ -2455,12 +2538,68 @@ void cdfDefZaxisHybridCF(stream_t *streamptr, int type, int ncvarid, int zaxisID
strcpy(tmpname, "down");
cdf_put_att_text(fileID, ncvarid, "positive", strlen(tmpname), tmpname);
int ncbvarid = UNDEFID;
int nvdimID = UNDEFID;
// if ( zaxisInqLbounds(zaxisID, NULL) && zaxisInqUbounds(zaxisID, NULL) )
{
int dimIDs[2];
size_t nvertex = 2;
if ( nc_inq_dimid(fileID, BNDS_NAME, &nvdimID) != NC_NOERR )
cdf_def_dim(fileID, BNDS_NAME, nvertex, &nvdimID);
if ( nvdimID != UNDEFID )
{
strcat(axisname, "_");
strcat(axisname, BNDS_NAME);
dimIDs[0] = *dimID;
dimIDs[1] = nvdimID;
cdf_def_var(fileID, axisname, (nc_type) xtype, 2, dimIDs, &ncbvarid);
cdf_put_att_text(fileID, ncvarid, "bounds", strlen(axisname), axisname);
strcpy(tmpname, "atmosphere_hybrid_sigma_pressure_coordinate");
cdf_put_att_text(fileID, ncbvarid, "standard_name", strlen(tmpname), tmpname);
strcpy(tmpname, "p = ap + b*ps");
cdf_put_att_text(fileID, ncbvarid, "formula", strlen(tmpname), tmpname);
strcpy(tmpname, "ap: ap_bnds b: b_bnds ps: ps");
cdf_put_att_text(fileID, ncbvarid, "formula_terms", strlen(tmpname), tmpname);
strcpy(tmpname, "1");
cdf_put_att_text(fileID, ncbvarid, "units", strlen(tmpname), tmpname);
}
}
cdf_enddef(fileID);
streamptr->ncmode = 2;
cdf_put_var_double(fileID, ncvarid, zaxisInqLevelsPtr(zaxisID));
cdfDefVCT(streamptr, zaxisID);
if ( ncbvarid != UNDEFID )
{
double *lbounds = (double *) malloc(dimlen*sizeof(double));
double *ubounds = (double *) malloc(dimlen*sizeof(double));
double *zbounds = (double *) malloc(2*dimlen*sizeof(double));
// zaxisInqLbounds(zaxisID, lbounds);
// zaxisInqUbounds(zaxisID, ubounds);
zaxisInqLevels(zaxisID, lbounds);
for (size_t i = 0; i < dimlen; ++i ) ubounds[i] = lbounds[i] + 1;
for (size_t i = 0; i < dimlen; ++i )
{
zbounds[2*i ] = lbounds[i];
zbounds[2*i+1] = ubounds[i];
}
cdf_put_var_double(fileID, ncbvarid, zbounds);
free(zbounds);
free(ubounds);
free(lbounds);
}
cdf_def_vct_cf(streamptr, zaxisID, *dimID, nvdimID);
if ( *dimID == UNDEFID )
{
......@@ -2472,14 +2611,14 @@ void cdfDefZaxisHybridCF(stream_t *streamptr, int type, int ncvarid, int zaxisID
}
static
void cdfDefZaxisHybrid(stream_t *streamptr, int type, int ncvarid, int zaxisID, int zaxisindex, int xtype, size_t dimlen, int *dimID, char *axisname)
void cdf_def_zaxis_hybrid(stream_t *streamptr, int type, int ncvarid, int zaxisID, int zaxisindex, int xtype, size_t dimlen, int *dimID, char *axisname)
{
extern int cdiConvention;
if ( cdiConvention == CDI_CONVENTION_ECHAM || type == ZAXIS_HYBRID_HALF )
cdfDefZaxisHybridEcham(streamptr, type, ncvarid, zaxisID, zaxisindex, xtype, dimlen, dimID, axisname);
cdf_def_zaxis_hybrid_echam(streamptr, type, ncvarid, zaxisID, zaxisindex, xtype, dimlen, dimID, axisname);
else
cdfDefZaxisHybridCF(streamptr, type, ncvarid, zaxisID, zaxisindex, xtype, dimlen, dimID, axisname);
cdf_def_zaxis_hybrid_cf(streamptr, type, ncvarid, zaxisID, zaxisindex, xtype, dimlen, dimID, axisname);
}
static
......@@ -2596,7 +2735,7 @@ void cdfDefZaxis(stream_t *streamptr, int zaxisID)
if ( type == ZAXIS_HYBRID || type == ZAXIS_HYBRID_HALF )
{
cdfDefZaxisHybrid(streamptr, type, ncvarid, zaxisID, zaxisindex, xtype, dimlen, &dimID, axisname);
cdf_def_zaxis_hybrid(streamptr, type, ncvarid, zaxisID, zaxisindex, xtype, dimlen, &dimID, axisname);
}
else
{
......@@ -2655,16 +2794,14 @@ void cdfDefZaxis(stream_t *streamptr, int zaxisID)
if ( ncbvarid != UNDEFID )
{
double *zbounds, *lbounds, *ubounds;
lbounds = (double *) malloc(dimlen*sizeof(double));
ubounds = (double *) malloc(dimlen*sizeof(double));
zbounds = (double *) malloc(2*dimlen*sizeof(double));
double *lbounds = (double *) malloc(dimlen*sizeof(double));
double *ubounds = (double *) malloc(dimlen*sizeof(double));
double *zbounds = (double *) malloc(2*dimlen*sizeof(double));
zaxisInqLbounds(zaxisID, lbounds);
zaxisInqUbounds(zaxisID, ubounds);
for (size_t i = 0; i < dimlen; ++i )
for ( size_t i = 0; i < dimlen; ++i )
{
zbounds[2*i ] = lbounds[i];
zbounds[2*i+1] = ubounds[i];
......@@ -2686,22 +2823,19 @@ void cdfDefZaxis(stream_t *streamptr, int zaxisID)
static
void cdfDefPole(stream_t *streamptr, int gridID)
{
int fileID;
int ncvarid = UNDEFID;
int ncerr;
double xpole, ypole, angle;
char varname[] = "rotated_pole";
char mapname[] = "rotated_latitude_longitude";
fileID = streamptr->fileID;
int fileID = streamptr->fileID;
ypole = gridInqYpole(gridID);
xpole = gridInqXpole(gridID);
angle = gridInqAngle(gridID);
double ypole = gridInqYpole(gridID);
double xpole = gridInqXpole(gridID);
double angle = gridInqAngle(gridID);
cdf_redef(fileID);
ncerr = nc_def_var(fileID, varname, (nc_type) NC_CHAR, 0, NULL, &ncvarid);
int ncerr = nc_def_var(fileID, varname, (nc_type) NC_CHAR, 0, NULL, &ncvarid);
if ( ncerr == NC_NOERR )
{
cdf_put_att_text(fileID, ncvarid, "grid_mapping_name", strlen(mapname), mapname);
......@@ -2718,8 +2852,8 @@ void cdfDefPole(stream_t *streamptr, int gridID)
static
void cdfDefMapping(stream_t *streamptr, int gridID)
{
int fileID;
int ncvarid = UNDEFID;
int fileID = streamptr->fileID;
int ncerr;
if ( gridInqType(gridID) == GRID_SINUSOIDAL )
......@@ -2727,8 +2861,6 @@ void cdfDefMapping(stream_t *streamptr, int gridID)
char varname[] = "sinusoidal";
char mapname[] = "sinusoidal";
fileID = streamptr->fileID;
cdf_redef(fileID);
ncerr = nc_def_var(fileID, varname, (nc_type) NC_CHAR, 0, NULL, &ncvarid);
......@@ -2748,8 +2880,6 @@ void cdfDefMapping(stream_t *streamptr, int gridID)
char varname[] = "laea";
char mapname[] = "lambert_azimuthal_equal_area";
fileID = streamptr->fileID;
cdf_redef(fileID);
ncerr = nc_def_var(fileID, varname, (nc_type) NC_CHAR, 0, NULL, &ncvarid);
......@@ -2772,8 +2902,6 @@ void cdfDefMapping(stream_t *streamptr, int gridID)
char varname[] = "Lambert_Conformal";
char mapname[] = "lambert_conformal_conic";
fileID = streamptr->fileID;
cdf_redef(fileID);
ncerr = nc_def_var(fileID, varname, (nc_type) NC_CHAR, 0, NULL, &ncvarid);
......@@ -2807,16 +2935,12 @@ void cdfDefMapping(stream_t *streamptr, int gridID)
static
void cdfDefGrid(stream_t *streamptr, int gridID)
{
int gridtype, size;
int gridindex;
int vlistID;
vlistID = streamptr->vlistID;
gridindex = vlistGridIndex(vlistID, gridID);
int vlistID = streamptr->vlistID;
int gridindex = vlistGridIndex(vlistID, gridID);
if ( streamptr->xdimID[gridindex] != UNDEFID ) return;
gridtype = gridInqType(gridID);
size = gridInqSize(gridID);
int gridtype = gridInqType(gridID);
int size = gridInqSize(gridID);
if ( CDI_Debug )
Message("gridtype = %d size = %d", gridtype, size);
......
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