diff --git a/autogen.sh b/autogen.sh
index bf4d01829bbd8c11ff01b392706781ed75041215..a3bec6b48bff99448d489073c147ea92e0a9ff50 100755
--- a/autogen.sh
+++ b/autogen.sh
@@ -1,76 +1,7 @@
#!/bin/sh
-for arg in "$@"; do
- case ${arg} in
- --help | -h)
- cat <<EOF
-Usage: $0 [OPTION]
-
-Generate the configure script and other Autotools files.
-
-Options:
- -h, --help display this help and exit
- -d, --download download the most recent versions
- of \`config.guess' and \`config.sub'
-
-EOF
- exit 0
- ;;
- --download | -d)
- download=yes
- ;;
- *)
- echo "ERROR: unrecognized option '${arg}': try \`$0 --help' for more information" >&2
- exit 2
- ;;
- esac
-done
-
script_dir=`echo "$0" | sed 's@[^/]*$@@'`
-echo "Running autoreconf in $script_dir"
(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
cd "$script_dir"
-autoreconf -fvi || exit $?
-
-# Patch libtool.m4:
-for patch in \
- contrib/000debian-no-overlink-patch/debian-no-overlink.patch \
- ; do
- echo "applying $patch"
- patch -p 1 --no-backup-if-mismatch --forward -r - -i $patch -d .
- # The program 'patch' exits with exitcode=1 if the patch has already been applied.
- # Consider this a normal scenario:
- exitcode=$?; if test $exitcode -ne 0 && test $exitcode -ne 1; then exit $exitcode; fi
-done
-autoconf -f || exit $?
-# Reset libtool.m4 timestamps to avoid confusing make:
-touch -r m4/ltversion.m4 m4/libtool.m4 || exit $?
-
-# Patch the rest of the files:
-for patch in \
- contrib/100nagfor-libtool-patch/nagfor-libtool-2.4.6.patch \
- contrib/101aix-deplib-rpath-patch/aix-deplib-libtool.patch \
- contrib/103ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.6.patch \
- contrib/104ltmain-xlinker-patch/ltmain-xlinker-patch.patch \
- contrib/105macos-nagfor-patch/macos-nagfor.patch \
- contrib/106ltmain_nag_pthread-patch/ltmain_nag_pthread.patch \
- contrib/107ltmain-early-xcompile-patch/ltmain-early-xcompile-libtool-2.4.6.patch \
- contrib/108ltmain-parallel-printf-patch/ltmain-parallel-printf.patch \
- ; do
- echo "applying $patch"
- patch -p 1 --no-backup-if-mismatch --forward -r - -i $patch -d .
- exitcode=$?; if test $exitcode -ne 0 && test $exitcode -ne 1; then exit $exitcode; fi
-done
-
-if test x"$download" = xyes; then
- url_base='https://git.savannah.gnu.org/cgit/config.git/plain'
-
- for file in config.guess config.sub; do
- echo "downloading $file"
- src="$url_base/$file"; dst="config/$file"
- wget -o /dev/null -O "$dst" "$src" || {
- echo "ERROR: failed to download from $src" >&2
- exit 1; }
- done
-fi
+./scripts/reconfigure
diff --git a/contrib/100nagfor-libtool-patch/README.txt b/contrib/00nagfor-libtool-patch/README.txt
similarity index 100%
rename from contrib/100nagfor-libtool-patch/README.txt
rename to contrib/00nagfor-libtool-patch/README.txt
diff --git a/contrib/00nagfor-libtool-patch/nagfor-libtool-2.4.2.patch b/contrib/00nagfor-libtool-patch/nagfor-libtool-2.4.2.patch
new file mode 100644
index 0000000000000000000000000000000000000000..5a5a4af38a4ef1c4e770a283d63813ba3c0aa51d
--- /dev/null
+++ b/contrib/00nagfor-libtool-patch/nagfor-libtool-2.4.2.patch
@@ -0,0 +1,137 @@
+--- a/config/ltmain.sh 2012-06-12 00:20:43.000000000 +0200
++++ b/config/ltmain.sh 2014-08-19 16:34:48.161235251 +0200
+@@ -3229,6 +3229,25 @@
+
+ test "$opt_mode" = install && func_mode_install ${1+"$@"}
+
++func_add2xrpath ()
++{
++ dir="$1"
++ # We need an absolute path.
++ case $dir in
++ [\\/]* | [A-Za-z]:[\\/]*) ;;
++ =*)
++ func_stripname '=' '' "$dir"
++ dir=$lt_sysroot$func_stripname_result
++ ;;
++ *)
++ func_fatal_error "only absolute run-paths are allowed"
++ ;;
++ esac
++ case "$xrpath " in
++ *" $dir "*) ;;
++ *) func_append xrpath " $dir" ;;
++ esac
++}
+
+ # func_generate_dlsyms outputname originator pic_p
+ # Extract symbols from dlprefiles and create ${outputname}S.o with
+@@ -5727,20 +5746,7 @@
+ func_stripname '-R' '' "$arg"
+ dir=$func_stripname_result
+ # We need an absolute path.
+- case $dir in
+- [\\/]* | [A-Za-z]:[\\/]*) ;;
+- =*)
+- func_stripname '=' '' "$dir"
+- dir=$lt_sysroot$func_stripname_result
+- ;;
+- *)
+- func_fatal_error "only absolute run-paths are allowed"
+- ;;
+- esac
+- case "$xrpath " in
+- *" $dir "*) ;;
+- *) func_append xrpath " $dir" ;;
+- esac
++ func_add2xrpath "$dir"
+ continue
+ ;;
+
+@@ -5801,18 +5807,58 @@
+ ;;
+
+ -Wl,*)
++ wlprefix=`expr x"$wl" : '.*' - 1`
++ wlprefix=`expr x"$arg" : 'x\(.\{'"$wlprefix"'\}\)'`
++ if test x"$wlprefix" = x"$wl" -a x"$wl" != x"-Wl,"; then
++ func_append compiler_flags " $arg"
++ func_append compile_command " $arg"
++ func_append finalize_command " $arg"
++ if expr "x$arg" : '^x'"$wl"'-rpath,,' >/dev/null ; then
++ func_stripname "$wl"'-rpath,,' '' "$arg"
++ dir=$func_stripname_result
++ func_add2xrpath "$dir"
++ elif expr "x$arg" : '^x'"$wl"'-rpath$' >/dev/null ; then
++ func_stripname "$wl" '' "$1"
++ dir=$func_stripname_result
++ if ! expr "x$1" : '^x'"$wl" >/dev/null \
++ || ! test -d "$dir" ; then
++ func_fatal_error "$wl"'-rpath must be followed by '"$wl"'-escaped directory'
++ fi
++ shift
++ func_add2xrpath "$dir"
++ continue
++ else
++ func_stripname "$wl" '' "$arg"
++ func_append new_inherited_linker_flags " -Wl,$func_stripname_result"
++ fi
++ continue
++ elif expr "x$arg" : '^x-Wl,-rpath,' >/dev/null ; then
++ func_stripname '-Wl,-rpath,' '' "$arg"
++ dir=$func_stripname_result
++ func_add2xrpath "$dir"
++ continue
++ elif expr "x$arg" : '^x-Wl,-rpath$' >/dev/null ; then
++ func_stripname '-Wl,' '' "$1"
++ dir=$func_stripname_result
++ if ! expr "x$1" : '^x-Wl,' >/dev/null \
++ || ! test -d "$dir" ; then
++ func_fatal_error '-Wl,-rpath must be followed by -Wl-escaped directory'
++ fi
++ func_quote_for_eval "$1"
++ func_append libtool_args " $func_quote_for_eval_result"
++ shift
++ func_add2xrpath "$dir"
++ continue
++ fi
+ func_stripname '-Wl,' '' "$arg"
+ args=$func_stripname_result
+ arg=
+- save_ifs="$IFS"; IFS=','
++ save_ifs=$IFS; IFS=,
+ for flag in $args; do
+- IFS="$save_ifs"
++ IFS=$save_ifs
+ func_quote_for_eval "$flag"
+ func_append arg " $wl$func_quote_for_eval_result"
+ func_append compiler_flags " $wl$func_quote_for_eval_result"
+ func_append linker_flags " $func_quote_for_eval_result"
+ done
+- IFS="$save_ifs"
++ IFS=$save_ifs
+ func_stripname ' ' '' "$arg"
+ arg=$func_stripname_result
+ ;;
+@@ -9515,6 +9562,10 @@
+ *) func_append new_libs " $deplib" ;;
+ esac
+ ;;
++ -Wl,*)
++ func_stripname -Wl, '' "$deplib"
++ func_append new_libs " $wl$func_stripname_result"
++ ;;
+ *) func_append new_libs " $deplib" ;;
+ esac
+ done
+@@ -10247,6 +10298,10 @@
+ *) func_append new_libs " $deplib" ;;
+ esac
+ ;;
++ -Wl,*)
++ func_stripname -Wl, '' "$deplib"
++ func_append new_libs " $wl$func_stripname_result"
++ ;;
+ *) func_append new_libs " $deplib" ;;
+ esac
+ done
diff --git a/contrib/100nagfor-libtool-patch/nagfor-libtool-2.4.6.patch b/contrib/00nagfor-libtool-patch/nagfor-libtool-2.4.6.patch
similarity index 100%
rename from contrib/100nagfor-libtool-patch/nagfor-libtool-2.4.6.patch
rename to contrib/00nagfor-libtool-patch/nagfor-libtool-2.4.6.patch
diff --git a/contrib/00nagfor-libtool-patch/nagfor-libtool.patch b/contrib/00nagfor-libtool-patch/nagfor-libtool.patch
new file mode 100644
index 0000000000000000000000000000000000000000..9677b1666963501864636f115774ed319fff844c
--- /dev/null
+++ b/contrib/00nagfor-libtool-patch/nagfor-libtool.patch
@@ -0,0 +1,112 @@
+--- a/config/ltmain.sh 2012-06-12 00:20:43.000000000 +0200
++++ b/config/ltmain.sh 2014-08-19 16:34:48.161235251 +0200
+@@ -3229,6 +3229,25 @@
+
+ test "$opt_mode" = install && func_mode_install ${1+"$@"}
+
++func_add2xrpath ()
++{
++ dir="$1"
++ # We need an absolute path.
++ case $dir in
++ [\\/]* | [A-Za-z]:[\\/]*) ;;
++ =*)
++ func_stripname '=' '' "$dir"
++ dir=$lt_sysroot$func_stripname_result
++ ;;
++ *)
++ func_fatal_error "only absolute run-paths are allowed"
++ ;;
++ esac
++ case "$xrpath " in
++ *" $dir "*) ;;
++ *) func_append xrpath " $dir" ;;
++ esac
++}
+
+ # func_generate_dlsyms outputname originator pic_p
+ # Extract symbols from dlprefiles and create ${outputname}S.o with
+@@ -5727,20 +5746,7 @@
+ func_stripname '-R' '' "$arg"
+ dir=$func_stripname_result
+ # We need an absolute path.
+- case $dir in
+- [\\/]* | [A-Za-z]:[\\/]*) ;;
+- =*)
+- func_stripname '=' '' "$dir"
+- dir=$lt_sysroot$func_stripname_result
+- ;;
+- *)
+- func_fatal_error "only absolute run-paths are allowed"
+- ;;
+- esac
+- case "$xrpath " in
+- *" $dir "*) ;;
+- *) func_append xrpath " $dir" ;;
+- esac
++ func_add2xrpath "$dir"
+ continue
+ ;;
+
+@@ -5801,18 +5807,58 @@
+ ;;
+
+ -Wl,*)
++ wlprefix=`expr x"$wl" : '.*' - 1`
++ wlprefix=`expr x"$arg" : 'x\(.\{'"$wlprefix"'\}\)'`
++ if test x"$wlprefix" = x"$wl" -a x"$wl" != x"-Wl,"; then
++ func_append compiler_flags " $arg"
++ func_append compile_command " $arg"
++ func_append finalize_command " $arg"
++ if expr "x$arg" : '^x'"$wl"'-rpath,,' >/dev/null ; then
++ func_stripname "$wl"'-rpath,,' '' "$arg"
++ dir=$func_stripname_result
++ func_add2xrpath "$dir"
++ elif expr "x$arg" : '^x'"$wl"'-rpath$' >/dev/null ; then
++ func_stripname "$wl" '' "$1"
++ dir=$func_stripname_result
++ if ! expr "x$1" : '^x'"$wl" >/dev/null \
++ || ! test -d "$dir" ; then
++ func_fatal_error "$wl"'-rpath must be followed by '"$wl"'-escaped directory'
++ fi
++ shift
++ func_add2xrpath "$dir"
++ continue
++ else
++ func_append new_inherited_linker_flags " $arg"
++ fi
++ continue
++ elif expr "x$arg" : '^x-Wl,-rpath,' >/dev/null ; then
++ func_stripname '-Wl,-rpath,' '' "$arg"
++ dir=$func_stripname_result
++ func_add2xrpath "$dir"
++ continue
++ elif expr "x$arg" : '^x-Wl,-rpath$' >/dev/null ; then
++ func_stripname '-Wl,' '' "$1"
++ dir=$func_stripname_result
++ if ! expr "x$1" : '^x-Wl,' >/dev/null \
++ || ! test -d "$dir" ; then
++ func_fatal_error '-Wl,-rpath must be followed by -Wl-escaped directory'
++ fi
++ shift
++ func_add2xrpath "$dir"
++ continue
++ fi
+ func_stripname '-Wl,' '' "$arg"
+ args=$func_stripname_result
+ arg=
+- save_ifs="$IFS"; IFS=','
++ save_ifs=$IFS; IFS=,
+ for flag in $args; do
+- IFS="$save_ifs"
++ IFS=$save_ifs
+ func_quote_for_eval "$flag"
+ func_append arg " $wl$func_quote_for_eval_result"
+ func_append compiler_flags " $wl$func_quote_for_eval_result"
+ func_append linker_flags " $func_quote_for_eval_result"
+ done
+- IFS="$save_ifs"
++ IFS=$save_ifs
+ func_stripname ' ' '' "$arg"
+ arg=$func_stripname_result
+ ;;
diff --git a/contrib/101aix-deplib-rpath-patch/README b/contrib/01aix-deplib-rpath-patch/README
similarity index 100%
rename from contrib/101aix-deplib-rpath-patch/README
rename to contrib/01aix-deplib-rpath-patch/README
diff --git a/contrib/101aix-deplib-rpath-patch/aix-deplib-libtool.patch b/contrib/01aix-deplib-rpath-patch/aix-deplib-libtool.patch
similarity index 100%
rename from contrib/101aix-deplib-rpath-patch/aix-deplib-libtool.patch
rename to contrib/01aix-deplib-rpath-patch/aix-deplib-libtool.patch
diff --git a/contrib/02nagfor53-shared-patch/README.txt b/contrib/02nagfor53-shared-patch/README.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4fb7b1a1fd1b62ea33b1a70a4e178471c32e1a81
--- /dev/null
+++ b/contrib/02nagfor53-shared-patch/README.txt
@@ -0,0 +1,3 @@
+This patch changes NAG Fortran (nagfor) compilations of shared
+libraries to correctly pass the -shared flag to the underlying
+compiler.
diff --git a/contrib/02nagfor53-shared-patch/nagfor53-shared.patch b/contrib/02nagfor53-shared-patch/nagfor53-shared.patch
new file mode 100644
index 0000000000000000000000000000000000000000..fbf69f01f1db14b4435df119763bc4c8fd7f7366
--- /dev/null
+++ b/contrib/02nagfor53-shared-patch/nagfor53-shared.patch
@@ -0,0 +1,11 @@
+--- a/m4/libtool.m4 2013-08-01 11:23:32.749610298 +0200
++++ b/m4/libtool.m4 2014-04-04 15:30:02.855209645 +0200
+@@ -4817,6 +4817,8 @@
+ lf95*) # Lahey Fortran 8.1
+ _LT_TAGVAR(whole_archive_flag_spec, $1)=
+ tmp_sharedflag='--shared' ;;
++ nagfor*) # NAGFOR 5.3
++ tmp_sharedflag='-Wl,-shared' ;;
+ xl[[cC]]* | bgxl[[cC]]* | mpixl[[cC]]*) # IBM XL C 8.0 on PPC (deal with xlf below)
+ tmp_sharedflag='-qmkshrobj'
+ tmp_addflag= ;;
diff --git a/contrib/103ltmain-ld-groups-patch/README b/contrib/03ltmain-ld-groups-patch/README
similarity index 100%
rename from contrib/103ltmain-ld-groups-patch/README
rename to contrib/03ltmain-ld-groups-patch/README
diff --git a/contrib/03ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.2.patch b/contrib/03ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.2.patch
new file mode 100644
index 0000000000000000000000000000000000000000..c319cb66497fe06022d626571fc39139cc2bc12f
--- /dev/null
+++ b/contrib/03ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.2.patch
@@ -0,0 +1,30 @@
+--- a/config/ltmain.sh 2016-10-27 18:58:49.860787638 +0200
++++ b/config/ltmain.sh 2016-10-27 18:59:21.497411984 +0200
+@@ -5806,6 +5806,11 @@
+ arg=$func_stripname_result
+ ;;
+
++ -Wl,--start-group|-Wl,--end-group|-Wl,-\(|-Wl,-\))
++ func_append deplibs " $arg"
++ continue
++ ;;
++
+ -Wl,*)
+ wlprefix=`expr x"$wl" : '.*' - 1`
+ wlprefix=`expr x"$arg" : 'x\(.\{'"$wlprefix"'\}\)'`
+@@ -6434,6 +6439,15 @@
+ alldeplibs=yes
+ continue
+ ;;
++ -Wl,--start-group|-Wl,--end-group|-Wl,-\(|-Wl,-\))
++ if test "$linkmode,$pass" = "prog,link"; then
++ compile_deplibs="$deplib $compile_deplibs"
++ finalize_deplibs="$deplib $finalize_deplibs"
++ else
++ deplibs="$deplib $deplibs"
++ fi
++ continue
++ ;;
+ esac # case $deplib
+
+ if test "$found" = yes || test -f "$lib"; then :
diff --git a/contrib/103ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.6.patch b/contrib/03ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.6.patch
similarity index 100%
rename from contrib/103ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.6.patch
rename to contrib/03ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.6.patch
diff --git a/contrib/104ltmain-xlinker-patch/README b/contrib/04ltmain-xlinker-patch/README
similarity index 100%
rename from contrib/104ltmain-xlinker-patch/README
rename to contrib/04ltmain-xlinker-patch/README
diff --git a/contrib/104ltmain-xlinker-patch/ltmain-xlinker-patch.patch b/contrib/04ltmain-xlinker-patch/ltmain-xlinker-patch.patch
similarity index 100%
rename from contrib/104ltmain-xlinker-patch/ltmain-xlinker-patch.patch
rename to contrib/04ltmain-xlinker-patch/ltmain-xlinker-patch.patch
diff --git a/contrib/105macos-nagfor-patch/macos-nagfor.patch b/contrib/05macos-nagfor-patch/macos-nagfor.patch
similarity index 100%
rename from contrib/105macos-nagfor-patch/macos-nagfor.patch
rename to contrib/05macos-nagfor-patch/macos-nagfor.patch
diff --git a/contrib/106ltmain_nag_pthread-patch/ltmain_nag_pthread.patch b/contrib/06ltmain_nag_pthread-patch/ltmain_nag_pthread.patch
similarity index 100%
rename from contrib/106ltmain_nag_pthread-patch/ltmain_nag_pthread.patch
rename to contrib/06ltmain_nag_pthread-patch/ltmain_nag_pthread.patch
diff --git a/contrib/107ltmain-early-xcompile-patch/README b/contrib/07ltmain-early-xcompile-patch/README
similarity index 100%
rename from contrib/107ltmain-early-xcompile-patch/README
rename to contrib/07ltmain-early-xcompile-patch/README
diff --git a/contrib/107ltmain-early-xcompile-patch/ltmain-early-xcompile-libtool-2.4.6.patch b/contrib/07ltmain-early-xcompile-patch/ltmain-early-xcompile-libtool-2.4.6.patch
similarity index 100%
rename from contrib/107ltmain-early-xcompile-patch/ltmain-early-xcompile-libtool-2.4.6.patch
rename to contrib/07ltmain-early-xcompile-patch/ltmain-early-xcompile-libtool-2.4.6.patch
diff --git a/contrib/108ltmain-parallel-printf-patch/ltmain-parallel-printf.patch b/contrib/08ltmain-parallel-printf-patch/ltmain-parallel-printf.patch
similarity index 100%
rename from contrib/108ltmain-parallel-printf-patch/ltmain-parallel-printf.patch
rename to contrib/08ltmain-parallel-printf-patch/ltmain-parallel-printf.patch
diff --git a/contrib/000debian-no-overlink-patch/README.txt b/contrib/09debian-no-overlink-patch/README.txt
similarity index 100%
rename from contrib/000debian-no-overlink-patch/README.txt
rename to contrib/09debian-no-overlink-patch/README.txt
diff --git a/contrib/000debian-no-overlink-patch/debian-no-overlink.patch b/contrib/09debian-no-overlink-patch/debian-no-overlink.libtool.m4.patch
similarity index 51%
rename from contrib/000debian-no-overlink-patch/debian-no-overlink.patch
rename to contrib/09debian-no-overlink-patch/debian-no-overlink.libtool.m4.patch
index 405cfb5846ec4761069dfa3d99e28e35931290c1..080e4a21a3e94ba090fc2cbd33e07b55ee7fc208 100644
--- a/contrib/000debian-no-overlink-patch/debian-no-overlink.patch
+++ b/contrib/09debian-no-overlink-patch/debian-no-overlink.libtool.m4.patch
@@ -1,47 +1,3 @@
---- a/config/ltmain.sh
-+++ b/config/ltmain.sh
-@@ -7568,7 +7568,10 @@ func_mode_link ()
- case $pass in
- dlopen) libs=$dlfiles ;;
- dlpreopen) libs=$dlprefiles ;;
-- link) libs="$deplibs %DEPLIBS% $dependency_libs" ;;
-+ link)
-+ libs="$deplibs %DEPLIBS%"
-+ test "X$link_all_deplibs" != Xno && libs="$libs $dependency_libs"
-+ ;;
- esac
- fi
- if test lib,dlpreopen = "$linkmode,$pass"; then
-@@ -7887,19 +7890,19 @@ func_mode_link ()
- # It is a libtool convenience library, so add in its objects.
- func_append convenience " $ladir/$objdir/$old_library"
- func_append old_convenience " $ladir/$objdir/$old_library"
-+ tmp_libs=
-+ for deplib in $dependency_libs; do
-+ deplibs="$deplib $deplibs"
-+ if $opt_preserve_dup_deps; then
-+ case "$tmp_libs " in
-+ *" $deplib "*) func_append specialdeplibs " $deplib" ;;
-+ esac
-+ fi
-+ func_append tmp_libs " $deplib"
-+ done
- elif test prog != "$linkmode" && test lib != "$linkmode"; then
- func_fatal_error "'$lib' is not a convenience library"
- fi
-- tmp_libs=
-- for deplib in $dependency_libs; do
-- deplibs="$deplib $deplibs"
-- if $opt_preserve_dup_deps; then
-- case "$tmp_libs " in
-- *" $deplib "*) func_append specialdeplibs " $deplib" ;;
-- esac
-- fi
-- func_append tmp_libs " $deplib"
-- done
- continue
- fi # $pass = conv
-
--- a/m4/libtool.m4
+++ b/m4/libtool.m4
@@ -4936,6 +4936,9 @@ m4_if([$1], [CXX], [
diff --git a/contrib/09debian-no-overlink-patch/debian-no-overlink.patch b/contrib/09debian-no-overlink-patch/debian-no-overlink.patch
new file mode 100644
index 0000000000000000000000000000000000000000..1ae35c1ae8654514dbcfe8f90e5fbd5cc3145ac2
--- /dev/null
+++ b/contrib/09debian-no-overlink-patch/debian-no-overlink.patch
@@ -0,0 +1,44 @@
+--- a/config/ltmain.sh
++++ b/config/ltmain.sh
+@@ -7646,7 +7646,10 @@ func_mode_link ()
+ case $pass in
+ dlopen) libs=$dlfiles ;;
+ dlpreopen) libs=$dlprefiles ;;
+- link) libs="$deplibs %DEPLIBS% $dependency_libs" ;;
++ link)
++ libs="$deplibs %DEPLIBS%"
++ test "X$link_all_deplibs" != Xno && libs="$libs $dependency_libs"
++ ;;
+ esac
+ fi
+ if test lib,dlpreopen = "$linkmode,$pass"; then
+@@ -7980,19 +7983,19 @@ func_mode_link ()
+ # It is a libtool convenience library, so add in its objects.
+ func_append convenience " $ladir/$objdir/$old_library"
+ func_append old_convenience " $ladir/$objdir/$old_library"
++ tmp_libs=
++ for deplib in $dependency_libs; do
++ deplibs="$deplib $deplibs"
++ if $opt_preserve_dup_deps; then
++ case "$tmp_libs " in
++ *" $deplib "*) func_append specialdeplibs " $deplib" ;;
++ esac
++ fi
++ func_append tmp_libs " $deplib"
++ done
+ elif test prog != "$linkmode" && test lib != "$linkmode"; then
+ func_fatal_error "'$lib' is not a convenience library"
+ fi
+- tmp_libs=
+- for deplib in $dependency_libs; do
+- deplibs="$deplib $deplibs"
+- if $opt_preserve_dup_deps; then
+- case "$tmp_libs " in
+- *" $deplib "*) func_append specialdeplibs " $deplib" ;;
+- esac
+- fi
+- func_append tmp_libs " $deplib"
+- done
+ continue
+ fi # $pass = conv
+
diff --git a/scripts/reconfigure b/scripts/reconfigure
new file mode 100755
index 0000000000000000000000000000000000000000..664d3def76f910bb0f02b3f4ef2e6bf2c43b1f5e
--- /dev/null
+++ b/scripts/reconfigure
@@ -0,0 +1,49 @@
+#! /bin/bash
+#
+# This script contains all the necessary steps to recreate the
+# autotools files to build CDI.
+#
+libtoolize --force --copy
+libtoolversion=$(libtoolize --version \
+ | sed -e 's/^libtoolize \(([^)]*) \)\{0,1\}\([0-9.]*\)/\2/;q')
+declare -a patches
+case "$libtoolversion" in
+ 2.4.6)
+ patches=(contrib/00nagfor-libtool-patch/nagfor-libtool-2.4.6.patch \
+ contrib/01aix-deplib-rpath-patch/aix-deplib-libtool.patch \
+ contrib/03ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.6.patch \
+ contrib/04ltmain-xlinker-patch/ltmain-xlinker-patch.patch \
+ contrib/05macos-nagfor-patch/macos-nagfor.patch \
+ contrib/06ltmain_nag_pthread-patch/ltmain_nag_pthread.patch \
+ contrib/07ltmain-early-xcompile-patch/ltmain-early-xcompile-libtool-2.4.6.patch \
+ contrib/08ltmain-parallel-printf-patch/ltmain-parallel-printf.patch \
+ contrib/09debian-no-overlink-patch/debian-no-overlink.patch)
+ ;;
+ 2.4.2)
+ patches=(contrib/00nagfor-libtool-patch/nagfor-libtool.patch \
+ contrib/01aix-deplib-rpath-patch/aix-deplib-libtool.patch \
+ contrib/02nagfor53-shared-patch/nagfor53-shared.patch \
+ contrib/03ltmain-ld-groups-patch/ltmain-ld-groups-libtool-2.4.2.patch \
+ contrib/04ltmain-xlinker-patch/ltmain-xlinker-patch.patch \
+ contrib/05macos-nagfor-patch/macos-nagfor.patch \
+ contrib/06ltmain_nag_pthread-patch/ltmain_nag_pthread.patch)
+ ;;
+esac
+for patch in "${patches[@]}"; do
+ echo "applying $patch" >&2
+ patch -p1 <$patch
+done
+autoreconf -i
+find . -name Makefile.in -print0 | xargs -0 sed -i -e 's/[ ][ ]*$//'
+\rm -f config/ltmain.sh.orig m4/libtool.m4.orig
+wget -o /dev/null -O config/config.guess \
+ 'http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD'
+wget -o /dev/null -O config/config.sub \
+ 'http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD'
+
+#
+# to test if this succeeded, one can run
+# diff -x autom4te.cache -x .git -ur orig/libcdi new/libcdi 2>&1 |less
+# if a known good checkout is at orig/libcdi and a newly reconfigured
+# tree is at new/libcdi
+#
diff --git a/scripts/reconfigure-mistral b/scripts/reconfigure-mistral
new file mode 100755
index 0000000000000000000000000000000000000000..abd40e2d3033926a61ff4e8d22741ff968d718ba
--- /dev/null
+++ b/scripts/reconfigure-mistral
@@ -0,0 +1,10 @@
+#! /bin/bash
+. /sw/rhel6-x64/etc/profile.mistral
+module load autoconf/2.69 automake/1.14.1 libtool/2.4.6
+autoconf --version
+automake --version
+libtoolize --version
+scripts/reconfigure
+if [ -x scripts/recreate-testsuite.sh ]; then
+ exec scripts/recreate-testsuite.sh
+fi