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Commit 25b35aa7 authored by Uwe Schulzweida's avatar Uwe Schulzweida
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Added getRSS.c.

parent 14fe2eb7
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src/Makefile.am
View file @ 25b35aa7
......@@ -71,6 +71,7 @@ libcdo_la_SOURCES = \
fieldzon.cc \
functs.h \
getMemorySize.c \
getRSS.c \
gradsdeslib.cc \
gradsdeslib.h \
grid.cc \
......
src/Makefile.in
View file @ 25b35aa7
......@@ -130,7 +130,7 @@ am_libcdo_la_OBJECTS = libcdo_la-argument.lo libcdo_la-array.lo \
libcdo_la-field.lo libcdo_la-field2.lo libcdo_la-fieldc.lo \
libcdo_la-fieldmem.lo libcdo_la-fieldmer.lo \
libcdo_la-fieldzon.lo libcdo_la-getMemorySize.lo \
libcdo_la-gradsdeslib.lo libcdo_la-grid.lo \
libcdo_la-getRSS.lo libcdo_la-gradsdeslib.lo libcdo_la-grid.lo \
libcdo_la-grid_proj.lo libcdo_la-grid_area.lo \
libcdo_la-grid_define.lo libcdo_la-grid_gme.lo \
libcdo_la-grid_rot.lo libcdo_la-grid_from_name.lo \
......@@ -613,11 +613,11 @@ libcdo_la_SOURCES = argument.h argument.cc array.h array.cc cdo_int.h \
expr.h expr_fun.cc expr_fun.h expr_lex.cc expr_yacc.cc \
expr_yacc.h features.cc field.cc field.h field2.cc fieldc.cc \
fieldmem.cc fieldmer.cc fieldzon.cc functs.h getMemorySize.c \
gradsdeslib.cc gradsdeslib.h grid.cc grid.h grid_proj.cc \
grid_proj.h grid_area.cc grid_define.cc grid_gme.cc \
grid_rot.cc grid_from_name.cc grid_read.cc grid_read_pingo.cc \
grid_print.cc gridreference.cc griddes.cc griddes.h \
griddes_h5.cc griddes_nc.cc hetaeta.cc hetaeta.h \
getRSS.c gradsdeslib.cc gradsdeslib.h grid.cc grid.h \
grid_proj.cc grid_proj.h grid_area.cc grid_define.cc \
grid_gme.cc grid_rot.cc grid_from_name.cc grid_read.cc \
grid_read_pingo.cc grid_print.cc gridreference.cc griddes.cc \
griddes.h griddes_h5.cc griddes_nc.cc hetaeta.cc hetaeta.h \
institution.cc interpol.cc interpol.h job.cc juldate.cc \
grid_search.cc grid_search.h listarray.cc listarray.h list.cc \
list.h listbuf.cc listbuf.h merge_sort2.cc merge_sort2.h \
......@@ -1145,6 +1145,7 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libcdo_la-fieldmer.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libcdo_la-fieldzon.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libcdo_la-getMemorySize.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libcdo_la-getRSS.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libcdo_la-gradsdeslib.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libcdo_la-grid.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libcdo_la-grid_area.Plo@am__quote@
......@@ -1254,6 +1255,13 @@ libcdo_la-getMemorySize.lo: getMemorySize.c
@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libcdo_la_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o libcdo_la-getMemorySize.lo `test -f 'getMemorySize.c' || echo '$(srcdir)/'`getMemorySize.c
 
libcdo_la-getRSS.lo: getRSS.c
@am__fastdepCC_TRUE@ $(AM_V_CC)$(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libcdo_la_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -MT libcdo_la-getRSS.lo -MD -MP -MF $(DEPDIR)/libcdo_la-getRSS.Tpo -c -o libcdo_la-getRSS.lo `test -f 'getRSS.c' || echo '$(srcdir)/'`getRSS.c
@am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/libcdo_la-getRSS.Tpo $(DEPDIR)/libcdo_la-getRSS.Plo
@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='getRSS.c' object='libcdo_la-getRSS.lo' libtool=yes @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libcdo_la_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o libcdo_la-getRSS.lo `test -f 'getRSS.c' || echo '$(srcdir)/'`getRSS.c
json/libcdo_la-jsmn.lo: json/jsmn.c
@am__fastdepCC_TRUE@ $(AM_V_CC)$(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libcdo_la_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -MT json/libcdo_la-jsmn.lo -MD -MP -MF json/$(DEPDIR)/libcdo_la-jsmn.Tpo -c -o json/libcdo_la-jsmn.lo `test -f 'json/jsmn.c' || echo '$(srcdir)/'`json/jsmn.c
@am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) json/$(DEPDIR)/libcdo_la-jsmn.Tpo json/$(DEPDIR)/libcdo_la-jsmn.Plo
......
src/cdo.cc
View file @ 25b35aa7
......@@ -81,7 +81,7 @@ static int numThreads = 0;
static int timer_total;
static int CDO_netcdf_hdr_pad = 0;
static int CDO_Rusage = 0;
static const char *username;
const char *CDO_username;
#ifdef __cplusplus
extern "C" {
......@@ -113,7 +113,7 @@ void gridsearch_set_method(const char *methodstr);
} \
}
#define ITSME (strcmp(username, "\x6d\x32\x31\x34\x30\x30\x33") == 0)
#define ITSME (strcmp(CDO_username, "\x6d\x32\x31\x34\x30\x30\x33") == 0)
static
void cdo_stackframe(void)
......@@ -192,7 +192,7 @@ void cdo_version(void)
const int filetypes[] = {CDI_FILETYPE_SRV, CDI_FILETYPE_EXT, CDI_FILETYPE_IEG, CDI_FILETYPE_GRB, CDI_FILETYPE_GRB2, CDI_FILETYPE_NC, CDI_FILETYPE_NC2, CDI_FILETYPE_NC4, CDI_FILETYPE_NC4C, CDI_FILETYPE_NC5};
const char* typenames[] = { "srv", "ext", "ieg", "grb1", "grb2", "nc1", "nc2", "nc4", "nc4c", "nc5"};
fprintf(stderr, "%s\n", CDO_Version);
fprintf(stderr, "%s\n", CDO_version);
#if defined(USER_NAME) && defined(HOST_NAME) && defined(SYSTEM_TYPE)
fprintf(stderr, "Compiled: by %s on %s (%s) %s %s\n", USER_NAME, HOST_NAME, SYSTEM_TYPE, __DATE__, __TIME__);
#endif
......@@ -234,7 +234,7 @@ void cdo_usage(void)
{
const char *name;
/* fprintf(stderr, "%s\n", CDO_Version);*/
/* fprintf(stderr, "%s\n", CDO_version);*/
/* fprintf(stderr, "\n");*/
fprintf(stderr, "usage : cdo [Options] Operator1 [-Operator2 [-OperatorN]]\n");
fprintf(stderr, "\n");
......@@ -733,11 +733,11 @@ void defineVarnames(const char *arg)
static
void get_env_vars(void)
{
username = getenv("LOGNAME");
if ( username == NULL )
CDO_username = getenv("LOGNAME");
if ( CDO_username == NULL )
{
username = getenv("USER");
if ( username == NULL ) username = "unknown";
CDO_username = getenv("USER");
if ( CDO_username == NULL ) CDO_username = "unknown";
}
char *envstr = getenv("CDO_GRID_SEARCH_DIR");
......@@ -1491,11 +1491,9 @@ int main(int argc, char *argv[])
setCommandLine(argc, argv);
Progname = getProgname(argv[0]);
if ( strncmp(Progname, "cdo", 3) == 0 && strlen(Progname) > 3 ) noff = 3;
if ( noff ) setDefaultFileType(Progname+noff, 0);
CDO_progname = getProgname(argv[0]);
if ( strncmp(CDO_progname, "cdo", 3) == 0 && strlen(CDO_progname) > 3 ) noff = 3;
if ( noff ) setDefaultFileType(CDO_progname+noff, 0);
get_env_vars();
init_modules();
......
src/cdo_int.h
View file @ 25b35aa7
......@@ -103,10 +103,10 @@ enum T_EIGEN_MODE {JACOBI, DANIELSON_LANCZOS};
#endif
#define NEW_2D(T, P2D, N, M) T **P2D = (N)?new T*[(N)]:nullptr; \
if ((N)) { P2D[0] = (M)?new T[(N)*(M)]:nullptr; \
for ( size_t i = 1; i < (size_t) (N); ++i ) P2D[i] = P2D[0] + i*(M); }
#define DELETE_2D(P2D) if (P2D) { if (P2D[0]) delete[] P2D[0]; delete[] P2D; P2D = nullptr; }
#define NEW_2D(T, P2D, N, M) T **P2D = (N)?new T*[(N)]:nullptr; \
if ((N)) { P2D[0] = (M)?new T[(N)*(M)]:nullptr; \
for ( size_t i = 1; i < (size_t) (N); ++i ) P2D[i] = P2D[0] + i*(M); }
#define DELETE_2D(P2D) if (P2D) { if (P2D[0]) delete[] P2D[0]; delete[] P2D; P2D = nullptr; }
#define IX2D(y,x,nx) ((y)*(nx)+(x))
......
src/getRSS.c 0 → 100644
View file @ 25b35aa7
/*
* Author: David Robert Nadeau
* Site: http://NadeauSoftware.com/
* License: Creative Commons Attribution 3.0 Unported License
* http://creativecommons.org/licenses/by/3.0/deed.en_US
*/
#if defined(_WIN32)
#include <windows.h>
#include <psapi.h>
#elif defined(__unix__) || defined(__unix) || defined(unix) || (defined(__APPLE__) && defined(__MACH__))
#include <unistd.h>
#include <sys/resource.h>
#if defined(__APPLE__) && defined(__MACH__)
#include <mach/mach.h>
#elif (defined(_AIX) || defined(__TOS__AIX__)) || (defined(__sun__) || defined(__sun) || defined(sun) && (defined(__SVR4) || defined(__svr4__)))
#include <fcntl.h>
#include <procfs.h>
#elif defined(__linux__) || defined(__linux) || defined(linux) || defined(__gnu_linux__)
#include <stdio.h>
#endif
#else
#error "Cannot define getPeakRSS( ) or getCurrentRSS( ) for an unknown OS."
#endif
/**
* Returns the peak (maximum so far) resident set size (physical
* memory use) measured in bytes, or zero if the value cannot be
* determined on this OS.
*/
size_t getPeakRSS( )
{
#if defined(_WIN32)
/* Windows -------------------------------------------------- */
PROCESS_MEMORY_COUNTERS info;
GetProcessMemoryInfo( GetCurrentProcess( ), &info, sizeof(info) );
return (size_t)info.PeakWorkingSetSize;
#elif (defined(_AIX) || defined(__TOS__AIX__)) || (defined(__sun__) || defined(__sun) || defined(sun) && (defined(__SVR4) || defined(__svr4__)))
/* AIX and Solaris ------------------------------------------ */
struct psinfo psinfo;
int fd = -1;
if ( (fd = open( "/proc/self/psinfo", O_RDONLY )) == -1 )
return (size_t)0L; /* Can't open? */
if ( read( fd, &psinfo, sizeof(psinfo) ) != sizeof(psinfo) )
{
close( fd );
return (size_t)0L; /* Can't read? */
}
close( fd );
return (size_t)(psinfo.pr_rssize * 1024L);
#elif defined(__unix__) || defined(__unix) || defined(unix) || (defined(__APPLE__) && defined(__MACH__))
/* BSD, Linux, and OSX -------------------------------------- */
struct rusage rusage;
getrusage( RUSAGE_SELF, &rusage );
#if defined(__APPLE__) && defined(__MACH__)
return (size_t)rusage.ru_maxrss;
#else
return (size_t)(rusage.ru_maxrss * 1024L);
#endif
#else
/* Unknown OS ----------------------------------------------- */
return (size_t)0L; /* Unsupported. */
#endif
}
/**
* Returns the current resident set size (physical memory use) measured
* in bytes, or zero if the value cannot be determined on this OS.
*/
size_t getCurrentRSS( )
{
#if defined(_WIN32)
/* Windows -------------------------------------------------- */
PROCESS_MEMORY_COUNTERS info;
GetProcessMemoryInfo( GetCurrentProcess( ), &info, sizeof(info) );
return (size_t)info.WorkingSetSize;
#elif defined(__APPLE__) && defined(__MACH__)
/* OSX ------------------------------------------------------ */
struct mach_task_basic_info info;
mach_msg_type_number_t infoCount = MACH_TASK_BASIC_INFO_COUNT;
if ( task_info( mach_task_self( ), MACH_TASK_BASIC_INFO,
(task_info_t)&info, &infoCount ) != KERN_SUCCESS )
return (size_t)0L; /* Can't access? */
return (size_t)info.resident_size;
#elif defined(__linux__) || defined(__linux) || defined(linux) || defined(__gnu_linux__)
/* Linux ---------------------------------------------------- */
long rss = 0L;
FILE* fp = NULL;
if ( (fp = fopen( "/proc/self/statm", "r" )) == NULL )
return (size_t)0L; /* Can't open? */
if ( fscanf( fp, "%*s%ld", &rss ) != 1 )
{
fclose( fp );
return (size_t)0L; /* Can't read? */
}
fclose( fp );
return (size_t)rss * (size_t)sysconf( _SC_PAGESIZE);
#else
/* AIX, BSD, Solaris, and Unknown OS ------------------------ */
return (size_t)0L; /* Unsupported. */
#endif
}
src/process.cc
View file @ 25b35aa7
......@@ -335,9 +335,9 @@ void
process_t::defPrompt()
{
if (m_ID == 0)
sprintf(prompt, "%s %s", Progname, operatorName);
sprintf(prompt, "%s %s", CDO_progname, operatorName);
else
sprintf(prompt, "%s(%d) %s", Progname, m_ID + 1, operatorName);
sprintf(prompt, "%s(%d) %s", CDO_progname, m_ID + 1, operatorName);
}
const char *
......@@ -1241,6 +1241,10 @@ processClosePipes(void)
}
}
extern "C" {
size_t getPeakRSS( );
}
void
cdoFinish(void)
{
......@@ -1327,9 +1331,8 @@ cdoFinish(void)
{
int mu[] = { 'b', 'k', 'm', 'g', 't' };
int muindex = 0;
long memmax;
memmax = memTotal();
// size_t memmax = memTotal();
size_t memmax = getPeakRSS();
while (memmax > 9999)
{
memmax /= 1024;
......@@ -1337,7 +1340,7 @@ cdoFinish(void)
}
if (memmax)
snprintf(memstring, sizeof(memstring), " %ld%c ", memmax, mu[muindex]);
snprintf(memstring, sizeof(memstring), " %zu%c", memmax, mu[muindex]);
processEndTime(&p_usertime, &p_systime);
p_cputime = p_usertime + p_systime;
......@@ -1352,11 +1355,11 @@ cdoFinish(void)
#if defined(HAVE_SYS_TIMES_H)
if (cdoBenchmark)
fprintf(stderr, " ( %.2fs %.2fs %.2fs %s)\n", c_usertime, c_systime, c_cputime, memstring);
fprintf(stderr, " ( %.2fs %.2fs %.2fs%s )\n", c_usertime, c_systime, c_cputime, memstring);
else
{
if (!cdoSilentMode)
fprintf(stderr, " ( %.2fs )\n", c_cputime);
fprintf(stderr, " ( %.2fs%s )\n", c_cputime, memstring);
}
if (cdoBenchmark && processID == 0)
fprintf(stderr, "total: user %.2fs sys %.2fs cpu %.2fs mem%s\n", p_usertime, p_systime, p_cputime, memstring);
......
src/util.cc
View file @ 25b35aa7
......@@ -45,17 +45,12 @@
#endif
/* refactor: moved here from *.c */
int CDO_opterr = 0;
const char *CDO_optarg = NULL;
int CDO_optind = 1;
int CDO_opterr = 0; // refactor: moved here from cdo_getopt.cc
const char *CDO_optarg = NULL; // refactor: moved here from cdo_getopt.cc
int CDO_optind = 1; // refactor: moved here from cdo_getopt.cc
/* refactor: moved here from cdo.cc */
char *Progname;
const char *CDO_Version = "Climate Data Operators version " VERSION" (http://mpimet.mpg.de/cdo)";
const char *CDO_progname = NULL;
const char *CDO_version = "Climate Data Operators version " VERSION" (http://mpimet.mpg.de/cdo)";
int ompNumThreads = 1;
......@@ -69,7 +64,7 @@ int cdoDefaultFileType = CDI_UNDEFID;
int cdoDefaultDataType = CDI_UNDEFID;
int cdoDefaultByteorder = CDI_UNDEFID;
int cdoDefaultTableID = CDI_UNDEFID;
int cdoDefaultInstID = CDI_UNDEFID; // moved here from institution.cc, was UNDEFID
int cdoDefaultInstID = CDI_UNDEFID;
int cdoDefaultTimeType = CDI_UNDEFID;
int cdoLockIO = FALSE;
......@@ -113,7 +108,7 @@ char **cdoVarnames = NULL;
char CDO_File_Suffix[32];
int cdoExpMode = -1;
const char *cdoExpName = NULL;
const char *cdoExpName = NULL;
int timer_read, timer_write;
......@@ -126,8 +121,8 @@ const char *cdoComment(void)
{
init = true;
int size = strlen(CDO_Version);
strncat(comment, CDO_Version, size);
int size = strlen(CDO_version);
strncat(comment, CDO_version, size);
comment[size] = 0;
}
......@@ -185,7 +180,7 @@ void cdo_omp_set_num_threads(int nthreads)
}
char *getProgname(char *string)
const char *getProgname(char *string)
{
#if defined(_WIN32)
/* progname = strrchr(string, '\\'); */
......@@ -194,8 +189,10 @@ char *getProgname(char *string)
char *progname = strrchr(string, '/');
#endif
if ( progname == NULL ) progname = string;
else progname++;
if ( progname == NULL )
progname = string;
else
progname++;
return progname;
}
......@@ -223,10 +220,7 @@ const char *getOperatorName(const char *operatorCommand)
if ( operatorCommand )
{
if ( operatorCommand[0] == '-' )
{
operatorCommand++;
}
if ( operatorCommand[0] == '-' ) operatorCommand++;
char *commapos = (char *)strchr(operatorCommand, ',');
size_t len = (commapos != NULL) ? (size_t)(commapos - operatorCommand) : strlen(operatorCommand);
......@@ -238,10 +232,11 @@ const char *getOperatorName(const char *operatorCommand)
/* return operatorName; */
if(is_alias(operatorName))
{
operatorName = get_original(operatorName);
}
return operatorName;
{
operatorName = get_original(operatorName);
}
return operatorName;
}
char *getOperatorArg(const char *p_operatorCommand)
......@@ -251,7 +246,6 @@ char *getOperatorArg(const char *p_operatorCommand)
if ( p_operatorCommand )
{
char *commapos = (char *)strchr(p_operatorCommand, ',');
if ( commapos )
{
size_t len = strlen(commapos+1);
......@@ -273,7 +267,6 @@ char *getFileArg(char *argument)
if ( argument )
{
char *blankpos = strchr(argument, ' ');
if ( blankpos )
{
char *parg = blankpos + 1;
......@@ -328,13 +321,11 @@ void input_int(char *arg, int intarr[], int maxint, int *nintfound)
std::string string2lower(std::string str)
{
std::string lower_case_string = str;
for(char c : str)
{
c = tolower(c);
}
return lower_case_string;
std::string lower_case_string = str;
for(char c : str) c = tolower(c);
return lower_case_string;
}
void strtolower(char *str)
{
if ( str )
......@@ -502,9 +493,7 @@ int month_to_season(int month)
return seas;
}
//#include <sys/types.h>
#include <sys/stat.h>
//#include <unistd.h>
bool fileExists(const char *restrict filename)
{
......
src/util.h
View file @ 25b35aa7
......@@ -43,8 +43,12 @@
#define UNCHANGED_RECORD (processSelf().m_ID == 0 && cdoStreamName(0)->argv[0][0] != '-' && cdoRegulargrid == FALSE && cdoDefaultFileType == -1 && cdoDefaultDataType == -1 && cdoDefaultByteorder == -1 )
#define ITSME (strcmp(CDO_username, "\x6d\x32\x31\x34\x30\x30\x33") == 0)
#include <string>
extern char *Progname;
extern const char *CDO_progname;
extern const char *CDO_version;
extern const char *CDO_username;
extern char *cdoGridSearchDir;
extern int CDO_Reduce_Dim;
extern int CDO_Memtype;
......@@ -109,12 +113,9 @@ extern int cdoNumVarnames;
extern char **cdoVarnames;
extern char CDO_File_Suffix[32]; // refactor: added keyword extern
extern const char *CDO_Version;
char *getProgname(char *string);
const char *getProgname(char *string);
char *GetOperator(const char *argument);
const char *getOperatorName(const char *operatorCommand);
char *getOperatorArg(const char *operatorCommand);
......
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