Implement dynamic linking of BOT and ATM files
Extend the create_symlinks.sh script so that it checks if BOT and ATM files exist. If they don't exist in the primary directory, try to find them in secondary directory and link to the files in the secondary directory.
This will be used temporarily for filling gaps in the postprocessed files in the new 1% runs by linking to a different directory that holds these files.
Will not be used anymore once the postprocessed files have been merged into the output directory.