[0KRunning with gitlab-runner 17.6.0 (374d34fd)[0;m [0K on slurm instance runner t1_biBx9C, system ID: s_3b9487865d15[0;m section_start:1734332811:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m [0KUsing Custom executor with driver Jacamar CI 0.21.0...[0;m section_end:1734332811:prepare_executor [0Ksection_start:1734332811:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m Targeting sbatch executor Static builds directory in use, all jobs results kept. Please be aware of large disk space requirements when using this runner (minimum days: 1) Running as k202187 UID: 250640 GID: 1567 Local time: 2024-12-16 08:06:51 Running on hpc-ci.dkrz.de via hpc-ci.dkrz.de... section_end:1734332811:prepare_script [0Ksection_start:1734332811:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m [32;1mFetching changes with git depth set to 20...[0;m Initialized empty Git repository in /scratch/hpc-ci/k202187/static/00540474/ch1187/plugins4freva/heat2urbanimpact/.git/ [32;1mCreated fresh repository.[0;m [32;1mChecking out 3a3cb999 as detached HEAD (ref is migration)...[0;m [32;1mSkipping Git submodules setup[0;m section_end:1734332814:get_sources [0Ksection_start:1734332814:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m [32;1mChecking cache for default-non_protected...[0;m Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=400545 revision[0;m=374d34fd version[0;m=17.6.0 No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m [32;1mSuccessfully extracted cache[0;m section_end:1734332815:restore_cache [0Ksection_start:1734332815:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m [0;33mWARNING: Starting with version 17.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/groups/gitlab-org/-/epics/6112[0;m [32;1mSlurm job command: sbatch --wait --job-name=ci-540474_1734332815 --output=/scratch/hpc-ci/k202187/scripts/t1_biBx9C/001/ch1187/plugins4freva/heat2urbanimpact/540474/slurm-ci-540474.out --account=ch1187 --partition=compute --mem=0 /scratch/hpc-ci/k202187/scripts/t1_biBx9C/001/ch1187/plugins4freva/heat2urbanimpact/540474/build_script.bash[0;m Submitted batch job 14300178 [32;1m$ module load clint regiklim-ces[0;m [32;1m$ make mamba-dep-install[0;m rm -fr build/ rm -fr dist/ rm -fr .eggs/ find . -name '*.egg-info' -exec rm -fr {} + find . -name '*.egg' -exec rm -rf {} + find . -name '*.pyc' -exec rm -f {} + find . -name '*.pyo' -exec rm -f {} + find . -name '*~' -exec rm -f {} + find . -name '__pycache__' -exec rm -fr {} + rm -fr .tox/ rm -f .coverage rm -fr htmlcov/ rm -fr .pytest_cache rm -rf venv mamba env create --prefix ./plugin_env -f heat2urbanimpact-env.yml conda-forge/linux-64 Using cache conda-forge/noarch Using cache Transaction Prefix: /scratch/hpc-ci/k202187/static/00540474/ch1187/plugins4freva/heat2urbanimpact/plugin_env Updating specs: - python=3.10 - pip - freva - git-lfs - python-swiftclient - cdo - conda - ipykernel - cftime - nbconvert - mamba - cartopy - geopandas - matplotlib - xarray - pandas - pint - pint-xarray - papermill - metpy - nc-time-axis - cf_xarray - dask - regionmask - shapely - fiona - h5netcdf - netcdf4 - zarr Package Version Build Channel Size ───────────────────────────────────────────────────────────────────────────────────────────────────────── Install: 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lazy_import 0.2.2 pyhd8ed1ab_0 conda-forge Cached + beautifulsoup4 4.12.3 pyha770c72_1 conda-forge Cached + tinycss2 1.4.0 pyhd8ed1ab_0 conda-forge Cached + bleach 6.2.0 pyhd8ed1ab_1 conda-forge Cached + importlib_resources 6.4.5 pyhd8ed1ab_1 conda-forge Cached + importlib-metadata 8.5.0 pyha770c72_1 conda-forge Cached + jupyterlab_pygments 0.3.0 pyhd8ed1ab_2 conda-forge Cached + comm 0.2.2 pyhd8ed1ab_1 conda-forge Cached + matplotlib-inline 0.1.7 pyhd8ed1ab_1 conda-forge Cached + cligj 0.7.2 pyhd8ed1ab_2 conda-forge Cached + click-plugins 1.1.1 pyhd8ed1ab_1 conda-forge Cached + asgiref 3.8.1 pyhd8ed1ab_1 conda-forge Cached + pypdf2 3.0.1 pyhd8ed1ab_0 conda-forge Cached + typing-extensions 4.12.2 hd8ed1ab_1 conda-forge Cached + jupyter_core 5.7.2 pyh31011fe_1 conda-forge Cached + partd 1.4.2 pyhd8ed1ab_0 conda-forge Cached + gitpython 3.1.43 pyhff2d567_1 conda-forge Cached + rich 13.9.4 pyhd8ed1ab_1 conda-forge Cached + ipython 8.30.0 pyh707e725_0 conda-forge Cached + django 5.1.4 pyhd8ed1ab_0 conda-forge Cached + async-timeout 4.0.3 pyhd8ed1ab_0 conda-forge Cached + flexparser 0.4 pyhd8ed1ab_1 conda-forge Cached + flexcache 0.3 pyhd8ed1ab_1 conda-forge Cached + pint 0.24.4 pyhd8ed1ab_1 conda-forge Cached + simplejson 3.19.3 py310ha75aee5_1 conda-forge Cached + ruamel.yaml.clib 0.2.8 py310ha75aee5_1 conda-forge Cached + jsonpointer 3.0.0 py310hff52083_1 conda-forge Cached + brotli-python 1.1.0 py310hf71b8c6_2 conda-forge Cached + propcache 0.2.1 py310ha75aee5_0 conda-forge Cached + frozenlist 1.5.0 py310ha75aee5_0 conda-forge Cached + libmambapy 2.0.5 py310h6639945_0 conda-forge Cached + menuinst 2.2.0 py310hff52083_0 conda-forge Cached + frozendict 2.4.6 py310ha75aee5_0 conda-forge Cached + pycosat 0.6.6 py310ha75aee5_2 conda-forge Cached + unicodedata2 15.1.0 py310ha75aee5_1 conda-forge Cached + pyside6 6.7.2 py310hfd10a26_4 conda-forge Cached + kiwisolver 1.4.7 py310h3788b33_0 conda-forge Cached + pyarrow-core 18.1.0 py310hac404ae_0_cpu conda-forge Cached + 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py310h3788b33_0 conda-forge Cached + pyogrio 0.10.0 py310h0aed7a2_1 conda-forge Cached + h5py 3.12.1 nompi_py310h60e0fe6_102 conda-forge Cached + scipy 1.14.1 py310hfcf56fc_2 conda-forge Cached + numcodecs 0.13.1 py310h5eaa309_0 conda-forge Cached + shapely 2.0.6 py310had3dfd6_2 conda-forge Cached + pandas 2.2.3 py310h5eaa309_1 conda-forge Cached + cftime 1.6.4 py310hf462985_1 conda-forge Cached + python-eccodes 2.37.0 py310hf462985_0 conda-forge Cached + zstandard 0.23.0 py310ha39cb0e_1 conda-forge Cached + yarl 1.18.3 py310ha75aee5_0 conda-forge Cached + matplotlib-base 3.9.4 py310h68603db_0 conda-forge Cached + scikit-learn 1.6.0 py310h27f47ee_0 conda-forge Cached + fiona 1.10.1 py310h0aed7a2_3 conda-forge Cached + netcdf4 1.7.2 nompi_py310h9f0ad05_101 conda-forge Cached + matplotlib 3.9.4 py310hff52083_0 conda-forge Cached + cartopy 0.24.0 py310h5eaa309_0 conda-forge Cached + jsonpatch 1.33 pyhd8ed1ab_1 conda-forge Cached + aiosignal 1.3.1 pyhd8ed1ab_1 conda-forge Cached + 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0.9.14.1 pyhd8ed1ab_0 conda-forge Cached + cf_xarray 0.10.0 pyhd8ed1ab_0 conda-forge Cached + pint-xarray 0.4 pyhd8ed1ab_0 conda-forge Cached + conda-package-handling 2.4.0 pyha770c72_1 conda-forge Cached + requests 2.32.3 pyhd8ed1ab_1 conda-forge Cached + distributed 2024.12.0 pyhd8ed1ab_1 conda-forge Cached + jsonschema 4.23.0 pyhd8ed1ab_1 conda-forge Cached + folium 0.19.0 pyhd8ed1ab_0 conda-forge Cached + pooch 1.8.2 pyhd8ed1ab_1 conda-forge Cached + python-swiftclient 4.6.0 pyhd8ed1ab_0 conda-forge Cached + dask 2024.12.0 pyhd8ed1ab_1 conda-forge Cached + nbformat 5.10.4 pyhd8ed1ab_1 conda-forge Cached + geopandas 1.0.1 pyhd8ed1ab_2 conda-forge Cached + metpy 1.6.3 pyhd8ed1ab_0 conda-forge Cached + nbclient 0.10.1 pyhd8ed1ab_0 conda-forge Cached + nbconvert-core 7.16.4 pyhff2d567_2 conda-forge Cached + nbconvert-pandoc 7.16.4 hd8ed1ab_2 conda-forge Cached + nbconvert 7.16.4 hd8ed1ab_2 conda-forge Cached + aiohttp 3.9.5 py310h2372a71_0 conda-forge Cached + magics 4.15.5 hc87abea_0 conda-forge Cached + rasterio 1.4.3 py310hbf83865_0 conda-forge Cached + conda 24.11.0 py310hff52083_0 conda-forge Cached + cdo 2.4.4 h0e6046d_2 conda-forge Cached + metadata-inspector 2024.10.15 pyhd8ed1ab_0 conda-forge Cached + papermill 2.6.0 pyhd8ed1ab_0 conda-forge Cached + regionmask 0.13.0 pyhd8ed1ab_0 conda-forge Cached + conda-libmamba-solver 24.11.1 pyhd8ed1ab_0 conda-forge Cached + freva 2410.0.0 pyhd8ed1ab_1 conda-forge Cached Summary: Install: 458 packages Total download: 0 B ───────────────────────────────────────────────────────────────────────────────────────────────────────── eccodes-2.39.0-h8bb6dbc_1.conda extraction failed error libmamba Error when extracting package: filesystem error: cannot remove all: Directory not empty [/home/k/k202187/.conda/pkgs/eccodes-2.39.0-h8bb6dbc_1] [/home/k/k202187/.conda/pkgs/eccodes-2.39.0-h8bb6dbc_1/share/eccodes/definitions/bufr/tables/0/wmo] # >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<< Traceback (most recent call last): File "/home/b/b380001/freva/lib/python3.10/site-packages/conda/exceptions.py", line 1129, in __call__ return func(*args, **kwargs) File "/home/b/b380001/freva/lib/python3.10/site-packages/conda_env/cli/main.py", line 80, in do_call exit_code = getattr(module, func_name)(args, parser) File "/home/b/b380001/freva/lib/python3.10/site-packages/conda/notices/core.py", line 72, in wrapper return_value = func(*args, **kwargs) File "/home/b/b380001/freva/lib/python3.10/site-packages/conda_env/cli/main_create.py", line 156, in execute result[installer_type] = installer.install(prefix, pkg_specs, args, env) File "/home/b/b380001/freva/lib/python3.10/site-packages/mamba/mamba_env.py", line 155, in mamba_install transaction.fetch_extract_packages() RuntimeError: filesystem error: cannot remove all: Directory not empty [/home/k/k202187/.conda/pkgs/eccodes-2.39.0-h8bb6dbc_1] [/home/k/k202187/.conda/pkgs/eccodes-2.39.0-h8bb6dbc_1/share/eccodes/definitions/bufr/tables/0/wmo/19] `$ /home/b/b380001/freva/bin/mamba create --prefix ./plugin_env -f heat2urbanimpact-env.yml` environment variables: CIO_TEST=<not set> CI_CONFIG_PATH=.gitlab-ci.yml CI_PROJECT_PATH=ch1187/plugins4freva/heat2urbanimpact CONDA_AUTO_UPDATE_CONDA=false CONDA_ROOT=/home/b/b380001/freva CURL_CA_BUNDLE=<not set> FPATH=/usr/share/lmod/lmod/init/ksh_funcs MANPATH=/usr/share/lmod/lmod/share/man::/opt/puppetlabs/puppet/share/man MODULEPATH=/work/ch1187/clint/Modules:/sw/spack-levante/spack/modules:/etc/module files:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/m odulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core PATH=/home/b/b380001/freva/bin:/home/b/b380001/freva/envs/gnu- r/bin:/sw/bin:/sw/spack-workplace/spack/bin:/usr/share/Modules/bin:/us r/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin REQUESTS_CA_BUNDLE=<not set> SSL_CERT_FILE=<not set> active environment : None user config file : /home/k/k202187/.condarc populated config files : /home/k/k202187/.condarc conda version : 22.9.0 conda-build version : not installed python version : 3.10.12.final.0 virtual packages : __linux=4.18.0=0 __glibc=2.28=0 __unix=0=0 __archspec=1=x86_64 base environment : /home/b/b380001/freva (read only) conda av data dir : /home/b/b380001/freva/etc/conda conda av metadata url : None channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch package cache : /home/b/b380001/freva/pkgs /home/k/k202187/.conda/pkgs envs directories : /home/k/k202187/.conda/envs /home/b/b380001/freva/envs platform : linux-64 user-agent : conda/22.9.0 requests/2.32.3 CPython/3.10.12 Linux/4.18.0-513.24.1.el8_9.x86_64 rhel/8.9 glibc/2.28 UID:GID : 250640:1567 netrc file : None offline mode : False An unexpected error has occurred. Conda has prepared the above report. Looking for: ['python=3.10', 'pip', 'freva', 'git-lfs', 'python-swiftclient', 'cdo', 'conda', 'ipykernel', 'cftime', 'nbconvert', 'mamba', 'cartopy', 'geopandas', 'matplotlib', 'xarray', 'pandas', 'pint', 'pint-xarray', 'papermill', 'metpy', 'nc-time-axis', 'cf_xarray', 'dask', 'regionmask', 'shapely', 'fiona', 'h5netcdf', 'netcdf4', 'zarr'] make: *** [Makefile:134: mamba-dep-install] Error 1 [0;33mError encountered during job: exit status 1[0;m [0;33mError encountered during job: Error executing run_exec: exit status 1[0;m section_end:1734333145:step_script [0Ksection_start:1734333145:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m [32;1mUploading artifacts...[0;m Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=400907 revision[0;m=374d34fd version[0;m=17.6.0 [0;33mWARNING: build/prod_test: no matching files. Ensure that the artifact path is relative to the working directory (/scratch/hpc-ci/k202187/static/00540474/ch1187/plugins4freva/heat2urbanimpact)[0;m [31;1mERROR: No files to upload [0;m section_end:1734333146:upload_artifacts_on_failure [0Ksection_start:1734333146:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m section_end:1734333146:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 [0;m