Running with gitlab-runner 17.6.0 (374d34fd)
  on slurm instance runner t1_biBx9C, system ID: s_3b9487865d15
section_start:1734332811:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver Jacamar CI 0.21.0...
section_end:1734332811:prepare_executor
section_start:1734332811:prepare_script
Preparing environment
Targeting sbatch executor
Static builds directory in use, all jobs results kept. Please be aware of large disk space requirements when using this runner (minimum days: 1)
Running as k202187 UID: 250640 GID: 1567
Local time: 2024-12-16 08:06:51

Running on hpc-ci.dkrz.de via hpc-ci.dkrz.de...
section_end:1734332811:prepare_script
section_start:1734332811:get_sources
Getting source from Git repository
Fetching changes with git depth set to 20...
Initialized empty Git repository in /scratch/hpc-ci/k202187/static/00540474/ch1187/plugins4freva/heat2urbanimpact/.git/
Created fresh repository.
Checking out 3a3cb999 as detached HEAD (ref is migration)...
Skipping Git submodules setup
section_end:1734332814:get_sources
section_start:1734332814:restore_cache
Restoring cache
Checking cache for default-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=400545 revision=374d34fd version=17.6.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted. 
Successfully extracted cache
section_end:1734332815:restore_cache
section_start:1734332815:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 17.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/groups/gitlab-org/-/epics/6112
Slurm job command: sbatch --wait --job-name=ci-540474_1734332815 --output=/scratch/hpc-ci/k202187/scripts/t1_biBx9C/001/ch1187/plugins4freva/heat2urbanimpact/540474/slurm-ci-540474.out --account=ch1187 --partition=compute --mem=0 /scratch/hpc-ci/k202187/scripts/t1_biBx9C/001/ch1187/plugins4freva/heat2urbanimpact/540474/build_script.bash
Submitted batch job 14300178
$ module load clint regiklim-ces
$ make mamba-dep-install
rm -fr build/
rm -fr dist/
rm -fr .eggs/
find . -name '*.egg-info' -exec rm -fr {} +
find . -name '*.egg' -exec rm -rf {} +
find . -name '*.pyc' -exec rm -f {} +
find . -name '*.pyo' -exec rm -f {} +
find . -name '*~' -exec rm -f {} +
find . -name '__pycache__' -exec rm -fr {} +
rm -fr .tox/
rm -f .coverage
rm -fr htmlcov/
rm -fr .pytest_cache
rm -rf venv
mamba env create --prefix ./plugin_env -f heat2urbanimpact-env.yml
conda-forge/linux-64                                        Using cache
conda-forge/noarch                                          Using cache
Transaction

  Prefix: /scratch/hpc-ci/k202187/static/00540474/ch1187/plugins4freva/heat2urbanimpact/plugin_env

  Updating specs:

   - python=3.10
   - pip
   - freva
   - git-lfs
   - python-swiftclient
   - cdo
   - conda
   - ipykernel
   - cftime
   - nbconvert
   - mamba
   - cartopy
   - geopandas
   - matplotlib
   - xarray
   - pandas
   - pint
   - pint-xarray
   - papermill
   - metpy
   - nc-time-axis
   - cf_xarray
   - dask
   - regionmask
   - shapely
   - fiona
   - h5netcdf
   - netcdf4
   - zarr


  Package                                      Version  Build                    Channel           Size
─────────────────────────────────────────────────────────────────────────────────────────────────────────
  Install:
─────────────────────────────────────────────────────────────────────────────────────────────────────────

  + git-lfs                                      3.6.0  h647637d_0               conda-forge     Cached
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  + python_abi                                    3.10  5_cp310                  conda-forge     Cached
  + ld_impl_linux-64                              2.43  h712a8e2_2               conda-forge     Cached
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  + libdeflate                                    1.22  hb9d3cd8_0               conda-forge     Cached
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  + libzlib                                      1.3.1  hb9d3cd8_2               conda-forge     Cached
  + libstdcxx                                   14.2.0  hc0a3c3a_1               conda-forge     Cached
  + libgcc-ng                                   14.2.0  h69a702a_1               conda-forge     Cached
  + libexpat                                     2.6.4  h5888daf_0               conda-forge     Cached
  + reproc                                14.2.5.post0  hb9d3cd8_0               conda-forge     Cached
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  + aws-checksums                                0.2.2  h4e1184b_4               conda-forge     Cached
  + libbrotlienc                                 1.1.0  hb9d3cd8_2               conda-forge     Cached
  + libbrotlidec                                 1.1.0  hb9d3cd8_2               conda-forge     Cached
  + libxcb                                      1.17.0  h8a09558_0               conda-forge     Cached
  + xz-tools                                     5.6.3  hb9d3cd8_1               conda-forge     Cached
  + xz-gpl-tools                                 5.6.3  hbcc6ac9_1               conda-forge     Cached
  + liblzma-devel                                5.6.3  hb9d3cd8_1               conda-forge     Cached
  + libgfortran                                 14.2.0  h69a702a_1               conda-forge     Cached
  + zlib                                         1.3.1  hb9d3cd8_2               conda-forge     Cached
  + libsqlite                                   3.47.2  hee588c1_0               conda-forge     Cached
  + libpng                                      1.6.44  hadc24fc_0               conda-forge     Cached
  + gflags                                       2.2.2  h5888daf_1005            conda-forge     Cached
  + simdjson                                    3.11.3  h84d6215_0               conda-forge     Cached
  + opencl-headers                          2024.10.24  h5888daf_0               conda-forge     Cached
  + snappy                                       1.2.1  h8bd8927_1               conda-forge     Cached
  + libabseil                               20240722.0  cxx17_h5888daf_1         conda-forge     Cached
  + pixman                                      0.44.2  h29eaf8c_0               conda-forge     Cached
  + libstdcxx-ng                                14.2.0  h4852527_1               conda-forge     Cached
  + svt-av1                                      2.3.0  h5888daf_0               conda-forge     Cached
  + openh264                                     2.5.0  hf92e6e3_0               conda-forge     Cached
  + geos                                        3.13.0  h5888daf_0               conda-forge     Cached
  + fribidi                                     1.0.10  h36c2ea0_0               conda-forge     Cached
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  + x264                                    1!164.3095  h166bdaf_2               conda-forge     Cached
  + libopus                                      1.3.1  h7f98852_1               conda-forge     Cached
  + lame                                         3.100  h166bdaf_1003            conda-forge     Cached
  + lzo                                           2.10  hd590300_1001            conda-forge     Cached
  + rav1e                                        0.6.6  he8a937b_2               conda-forge     Cached
  + libev                                         4.33  hd590300_2               conda-forge     Cached
  + libiconv                                      1.17  hd590300_2               conda-forge     Cached
  + libjpeg-turbo                                3.0.0  hd590300_1               conda-forge     Cached
  + tk                                          8.6.13  noxft_h4845f30_101       conda-forge     Cached
  + libxcrypt                                   4.4.36  hd590300_1               conda-forge     Cached
  + libffi                                       3.4.2  h7f98852_5               conda-forge     Cached
  + bzip2                                        1.0.8  h4bc722e_7               conda-forge     Cached
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  + libwebp-base                                 1.4.0  hd590300_0               conda-forge     Cached
  + dav1d                                        1.2.1  hd590300_0               conda-forge     Cached
  + libsodium                                   1.0.20  h4ab18f5_0               conda-forge     Cached
  + keyutils                                     1.6.1  h166bdaf_0               conda-forge     Cached
  + libuuid                                     2.38.1  h0b41bf4_0               conda-forge     Cached
  + libnsl                                       2.0.1  hd590300_0               conda-forge     Cached
  + libudunits2                                 2.2.28  h40f5838_3               conda-forge     Cached
  + expat                                        2.6.4  h5888daf_0               conda-forge     Cached
  + reproc-cpp                            14.2.5.post0  h5888daf_0               conda-forge     Cached
  + s2n                                          1.5.9  h0fd0ee4_0               conda-forge     Cached
  + aws-c-cal                                    0.8.1  h1a47875_3               conda-forge     Cached
  + libevent                                    2.1.12  hf998b51_1               conda-forge     Cached
  + libssh2                                     1.11.1  hf672d98_0               conda-forge     Cached
  + brotli-bin                                   1.1.0  hb9d3cd8_2               conda-forge     Cached
  + xorg-libx11                                 1.8.10  h4f16b4b_1               conda-forge     Cached
  + xcb-util-wm                                  0.4.2  hb711507_0               conda-forge     Cached
  + xcb-util-renderutil                         0.3.10  hb711507_0               conda-forge     Cached
  + xcb-util-keysyms                             0.4.1  hb711507_0               conda-forge     Cached
  + xcb-util                                     0.4.1  hb711507_2               conda-forge     Cached
  + xz                                           5.6.3  hbcc6ac9_1               conda-forge     Cached
  + libgfortran-ng                              14.2.0  h69a702a_1               conda-forge     Cached
  + libopenblas                                 0.3.28  pthreads_h94d23a6_1      conda-forge     Cached
  + freetype                                    2.12.1  h267a509_2               conda-forge     Cached
  + ocl-icd                                      2.3.2  hb9d3cd8_2               conda-forge     Cached
  + libre2-11                               2024.07.02  hbbce691_1               conda-forge     Cached
  + libprotobuf                                 5.28.2  h5b01275_0               conda-forge     Cached
  + libcrc32c                                    1.1.2  h9c3ff4c_0               conda-forge     Cached
  + glog                                         0.7.1  hbabe93e_0               conda-forge     Cached
  + gmp                                          6.3.0  hac33072_2               conda-forge     Cached
  + x265                                           3.5  h924138e_3               conda-forge     Cached
  + graphite2                                   1.3.13  h59595ed_1003            conda-forge     Cached
  + libde265                                    1.0.15  h00ab1b0_0               conda-forge     Cached
  + uriparser                                    0.9.8  hac33072_0               conda-forge     Cached
  + nlohmann_json                               3.11.3  he02047a_1               conda-forge     Cached
  + double-conversion                            3.3.0  h59595ed_0               conda-forge     Cached
  + icu                                           75.1  he02047a_0               conda-forge     Cached
  + qhull                                       2020.2  h434a139_5               conda-forge     Cached
  + lz4-c                                        1.9.4  hcb278e6_0               conda-forge     Cached
  + libaec                                       1.1.3  h59595ed_0               conda-forge     Cached
  + lerc                                         4.0.0  h27087fc_0               conda-forge     Cached
  + mysql-common                                 8.3.0  h70512c7_5               conda-forge     Cached
  + pugixml                                       1.14  h59595ed_0               conda-forge     Cached
  + libvpx                                      1.14.1  hac33072_0               conda-forge     Cached
  + aom                                          3.9.1  hac33072_0               conda-forge     Cached
  + zstd                                         1.5.6  ha6fb4c9_0               conda-forge     Cached
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  + libsolv                                     0.7.30  h3509ff9_0               conda-forge     Cached
  + fmt                                         11.0.2  h434a139_0               conda-forge     Cached
  + cpp-expected                                 1.1.0  hf52228f_0               conda-forge     Cached
  + librttopo                                    1.1.0  h97f6797_17              conda-forge     Cached
  + libdrm                                     2.4.124  hb9d3cd8_0               conda-forge     Cached
  + libnghttp2                                  1.64.0  h161d5f1_0               conda-forge     Cached
  + hdf4                                        4.2.15  h2a13503_7               conda-forge     Cached
  + perl                                        5.32.1  7_hd590300_perl5         conda-forge     Cached
  + wayland                                     1.23.1  h3e06ad9_0               conda-forge     Cached
  + pcre2                                        10.44  hba22ea6_2               conda-forge     Cached
  + libzip                                      1.11.2  h6991a6a_0               conda-forge     Cached
  + libedit                               3.1.20191231  he28a2e2_2               conda-forge     Cached
  + readline                                       8.2  h8228510_1               conda-forge     Cached
  + xorg-libsm                                   1.2.5  he73a12e_0               conda-forge     Cached
  + udunits2                                    2.2.28  h40f5838_3               conda-forge     Cached
  + aws-c-io                                    0.15.3  hbf5b6a4_4               conda-forge     Cached
  + libthrift                                   0.21.0  h0e7cc3e_0               conda-forge     Cached
  + brotli                                       1.1.0  hb9d3cd8_2               conda-forge     Cached
  + libglx                                       1.7.0  ha4b6fd6_2               conda-forge     Cached
  + xorg-libxrender                             0.9.12  hb9d3cd8_0               conda-forge     Cached
  + xorg-libxfixes                               6.0.1  hb9d3cd8_0               conda-forge     Cached
  + xorg-libxext                                 1.3.6  hb9d3cd8_0               conda-forge     Cached
  + xkeyboard-config                              2.43  hb9d3cd8_0               conda-forge     Cached
  + xcb-util-image                               0.4.0  hb711507_2               conda-forge     Cached
  + fftw                                        3.3.10  nompi_hf1063bd_110       conda-forge     Cached
  + libblas                                      3.9.0  25_linux64_openblas      conda-forge     Cached
  + fontconfig                                  2.15.0  h7e30c49_1               conda-forge     Cached
  + re2                                     2024.07.02  h77b4e00_1               conda-forge     Cached
  + libkml                                       1.3.0  hf539b9f_1021            conda-forge     Cached
  + xerces-c                                     3.2.5  h988505b_2               conda-forge     Cached
  + libxml2                                     2.13.5  h8d12d68_1               conda-forge     Cached
  + libavif16                                    1.1.1  h1909e37_2               conda-forge     Cached
  + minizip                                      4.0.7  h05a5f5f_3               conda-forge     Cached
  + libtiff                                      4.7.0  hc4654cb_2               conda-forge     Cached
  + blosc                                       1.21.6  hef167b5_0               conda-forge     Cached
  + mysql-libs                                   8.3.0  ha479ceb_5               conda-forge     Cached
  + spdlog                                      1.14.1  hed91bc2_1               conda-forge     Cached
  + libglib                                     2.82.2  h2ff4ddf_0               conda-forge     Cached
  + mysql-client                                 8.3.0  hb154bff_5               conda-forge     Cached
  + krb5                                        1.21.3  h659f571_0               conda-forge     Cached
  + sqlite                                      3.47.2  h9eae976_0               conda-forge     Cached
  + aws-c-event-stream                           0.5.0  h7959bf6_11              conda-forge     Cached
  + aws-c-http                                   0.9.2  hefd7a92_4               conda-forge     Cached
  + libgl                                        1.7.0  ha4b6fd6_2               conda-forge     Cached
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  + xorg-libxi                                   1.8.2  hb9d3cd8_0               conda-forge     Cached
  + xorg-libxdamage                              1.1.6  hb9d3cd8_0               conda-forge     Cached
  + xcb-util-cursor                              0.1.5  hb9d3cd8_0               conda-forge     Cached
  + libcblas                                     3.9.0  25_linux64_openblas      conda-forge     Cached
  + liblapack                                    3.9.0  25_linux64_openblas      conda-forge     Cached
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  + libllvm19                                   19.1.5  ha7bfdaf_0               conda-forge     Cached
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  + freexl                                       2.0.0  h9dce30a_2               conda-forge     Cached
  + openjpeg                                     2.5.3  h5fbd93e_0               conda-forge     Cached
  + lcms2                                         2.16  hb7c19ff_0               conda-forge     Cached
  + dbus                                        1.13.6  h5008d03_3               conda-forge     Cached
  + gdk-pixbuf                                 2.42.12  hb9ae30d_0               conda-forge     Cached
  + libpq                                         16.6  h035377e_1               conda-forge     Cached
  + libcups                                      2.3.3  h4637d8d_4               conda-forge     Cached
  + zeromq                                       4.3.5  h3b0a872_7               conda-forge     Cached
  + libcurl                                     8.11.1  h332b0f4_0               conda-forge     Cached
  + aws-c-auth                                   0.8.0  hb921021_15              conda-forge     Cached
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  + freeglut                                     3.2.2  ha6d2627_3               conda-forge     Cached
  + libglu                                       9.0.3  h03adeef_0               conda-forge     Cached
  + libclang-cpp18.1                            18.1.8  default_hf981a13_5       conda-forge     Cached
  + libclang13                                  19.1.5  default_h9c6a7e4_0       conda-forge     Cached
  + tbb                                       2022.0.0  hceb3a55_0               conda-forge     Cached
  + libgoogle-cloud                             2.31.0  h804f50b_0               conda-forge     Cached
  + azure-core-cpp                              1.14.0  h5cfcd09_0               conda-forge     Cached
  + hdf5                                        1.14.3  nompi_h2d575fe_108       conda-forge     Cached
  + git                                         2.47.1  pl5321h59d505e_0         conda-forge     Cached
  + libmamba                                     2.0.5  hf72d635_0               conda-forge     Cached
  + proj                                         9.5.1  h0054346_0               conda-forge     Cached
  + aws-c-s3                                     0.7.7  hf454442_0               conda-forge     Cached
  + jasper                                       4.2.4  h536e39c_0               conda-forge     Cached
  + libopenvino                               2024.5.0  hac27bb2_0               conda-forge     Cached
  + libgoogle-cloud-storage                     2.31.0  h0121fbd_0               conda-forge     Cached
  + azure-storage-common-cpp                    12.8.0  h736e048_1               conda-forge     Cached
  + azure-identity-cpp                          1.10.0  h113e628_0               conda-forge     Cached
  + libnetcdf                                    4.9.2  nompi_h00e09a9_116       conda-forge     Cached
  + mamba                                        2.0.5  hfdd0a45_0               conda-forge     Cached
  + libspatialite                                5.1.0  h1b4f908_12              conda-forge     Cached
  + geotiff                                      1.7.3  h77b800c_3               conda-forge     Cached
  + aws-crt-cpp                                 0.29.7  hd92328a_7               conda-forge     Cached
  + libopenvino-tensorflow-lite-frontend      2024.5.0  h5888daf_0               conda-forge     Cached
  + libopenvino-tensorflow-frontend           2024.5.0  h6481b9d_0               conda-forge     Cached
  + libopenvino-pytorch-frontend              2024.5.0  h5888daf_0               conda-forge     Cached
  + libopenvino-paddle-frontend               2024.5.0  h5c8f2c3_0               conda-forge     Cached
  + libopenvino-onnx-frontend                 2024.5.0  h5c8f2c3_0               conda-forge     Cached
  + libopenvino-ir-frontend                   2024.5.0  h3f63f65_0               conda-forge     Cached
  + libopenvino-intel-npu-plugin              2024.5.0  hac27bb2_0               conda-forge     Cached
  + libopenvino-intel-gpu-plugin              2024.5.0  hac27bb2_0               conda-forge     Cached
  + libopenvino-intel-cpu-plugin              2024.5.0  hac27bb2_0               conda-forge     Cached
  + libopenvino-hetero-plugin                 2024.5.0  h3f63f65_0               conda-forge     Cached
  + libopenvino-auto-plugin                   2024.5.0  h4d9b6c2_0               conda-forge     Cached
  + libopenvino-auto-batch-plugin             2024.5.0  h4d9b6c2_0               conda-forge     Cached
  + azure-storage-blobs-cpp                    12.13.0  h3cf044e_1               conda-forge     Cached
  + eccodes                                     2.39.0  h8bb6dbc_1               conda-forge     Cached
  + libgdal-core                                3.10.0  h7250d82_6               conda-forge     Cached
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  + smmap                                        5.0.0  pyhd8ed1ab_0             conda-forge     Cached
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  + pickleshare                                  0.7.5  pyhd8ed1ab_1004          conda-forge     Cached
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  + hurry.filesize                                 0.9  pyhd8ed1ab_1             conda-forge     Cached
  + dataclasses                                    0.8  pyhc8e2a94_3             conda-forge     Cached
  + idna                                          3.10  pyhd8ed1ab_1             conda-forge     Cached
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  + cycler                                      0.12.1  pyhd8ed1ab_1             conda-forge     Cached
  + pytz                                        2024.1  pyhd8ed1ab_0             conda-forge     Cached
  + python-tzdata                               2024.2  pyhd8ed1ab_1             conda-forge     Cached
  + certifi                                  2024.8.30  pyhd8ed1ab_0             conda-forge     Cached
  + affine                                       2.4.0  pyhd8ed1ab_1             conda-forge     Cached
  + six                                         1.17.0  pyhd8ed1ab_0             conda-forge     Cached
  + soupsieve                                      2.5  pyhd8ed1ab_1             conda-forge     Cached
  + webencodings                                 0.5.1  pyhd8ed1ab_3             conda-forge     Cached
  + fsspec                                   2024.10.0  pyhd8ed1ab_1             conda-forge     Cached
  + zict                                         3.0.0  pyhd8ed1ab_1             conda-forge     Cached
  + cloudpickle                                  3.1.0  pyhd8ed1ab_1             conda-forge     Cached
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  + sortedcontainers                             2.4.0  pyhd8ed1ab_0             conda-forge     Cached
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  + toml                                        0.10.2  pyhd8ed1ab_1             conda-forge     Cached
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  + zipp                                        3.21.0  pyhd8ed1ab_1             conda-forge     Cached
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  + attrs                                       24.2.0  pyh71513ae_1             conda-forge     Cached
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  + python-fastjsonschema                       2.21.1  pyhd8ed1ab_0             conda-forge     Cached
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  + entrypoints                                    0.4  pyhd8ed1ab_1             conda-forge     Cached
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  + typing_extensions                           4.12.2  pyha770c72_1             conda-forge     Cached
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  + asciitree                                    0.3.3  py_2                     conda-forge     Cached
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  + ansicolors                                   1.1.8  pyhd8ed1ab_0             conda-forge     Cached
  + archspec                                     0.2.3  pyhd8ed1ab_0             conda-forge     Cached
  + jedi                                        0.19.2  pyhd8ed1ab_1             conda-forge     Cached
  + pexpect                                      4.9.0  pyhd8ed1ab_1             conda-forge     Cached
  + prompt-toolkit                              3.0.48  pyha770c72_1             conda-forge     Cached
  + stack_data                                   0.6.3  pyhd8ed1ab_1             conda-forge     Cached
  + cached-property                              1.5.2  hd8ed1ab_1               conda-forge     Cached
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  + h2                                           4.1.0  pyhd8ed1ab_1             conda-forge     Cached
  + markdown-it-py                               3.0.0  pyhd8ed1ab_1             conda-forge     Cached
  + tqdm                                        4.67.1  pyhd8ed1ab_0             conda-forge     Cached
  + python-dateutil                        2.9.0.post0  pyhff2d567_1             conda-forge     Cached
  + lazy_import                                  0.2.2  pyhd8ed1ab_0             conda-forge     Cached
  + beautifulsoup4                              4.12.3  pyha770c72_1             conda-forge     Cached
  + tinycss2                                     1.4.0  pyhd8ed1ab_0             conda-forge     Cached
  + bleach                                       6.2.0  pyhd8ed1ab_1             conda-forge     Cached
  + importlib_resources                          6.4.5  pyhd8ed1ab_1             conda-forge     Cached
  + importlib-metadata                           8.5.0  pyha770c72_1             conda-forge     Cached
  + jupyterlab_pygments                          0.3.0  pyhd8ed1ab_2             conda-forge     Cached
  + comm                                         0.2.2  pyhd8ed1ab_1             conda-forge     Cached
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  + cligj                                        0.7.2  pyhd8ed1ab_2             conda-forge     Cached
  + click-plugins                                1.1.1  pyhd8ed1ab_1             conda-forge     Cached
  + asgiref                                      3.8.1  pyhd8ed1ab_1             conda-forge     Cached
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  + ruamel.yaml.clib                             0.2.8  py310ha75aee5_1          conda-forge     Cached
  + jsonpointer                                  3.0.0  py310hff52083_1          conda-forge     Cached
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  + frozenlist                                   1.5.0  py310ha75aee5_0          conda-forge     Cached
  + libmambapy                                   2.0.5  py310h6639945_0          conda-forge     Cached
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  + frozendict                                   2.4.6  py310ha75aee5_0          conda-forge     Cached
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  + unicodedata2                                15.1.0  py310ha75aee5_1          conda-forge     Cached
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  + lz4                                          4.3.3  py310hb259640_1          conda-forge     Cached
  + msgpack-python                               1.1.0  py310h3788b33_0          conda-forge     Cached
  + pillow                                      11.0.0  py310hfeaa1f3_0          conda-forge     Cached
  + mysqlclient                                  2.2.4  py310h95656fe_2          conda-forge     Cached
  + debugpy                                     1.8.11  py310hf71b8c6_0          conda-forge     Cached
  + psutil                                       6.1.0  py310ha75aee5_0          conda-forge     Cached
  + rpds-py                                     0.22.3  py310h505e2c1_0          conda-forge     Cached
  + tornado                                      6.4.2  py310ha75aee5_0          conda-forge     Cached
  + pyzmq                                       26.2.0  py310h71f11fc_3          conda-forge     Cached
  + markupsafe                                   3.0.2  py310h89163eb_1          conda-forge     Cached
  + pyyaml                                       6.0.2  py310ha75aee5_1          conda-forge     Cached
  + numpy                                        2.2.0  py310h5851e9f_0          conda-forge     Cached
  + cffi                                        1.17.1  py310h8deb56e_0          conda-forge     Cached
  + pyproj                                       3.7.0  py310h2e9f774_0          conda-forge     Cached
  + cytoolz                                      1.0.1  py310ha75aee5_0          conda-forge     Cached
  + multidict                                    6.1.0  py310h89163eb_2          conda-forge     Cached
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  + pyarrow                                     18.1.0  py310hff52083_0          conda-forge     Cached
  + contourpy                                    1.3.1  py310h3788b33_0          conda-forge     Cached
  + pyogrio                                     0.10.0  py310h0aed7a2_1          conda-forge     Cached
  + h5py                                        3.12.1  nompi_py310h60e0fe6_102  conda-forge     Cached
  + scipy                                       1.14.1  py310hfcf56fc_2          conda-forge     Cached
  + numcodecs                                   0.13.1  py310h5eaa309_0          conda-forge     Cached
  + shapely                                      2.0.6  py310had3dfd6_2          conda-forge     Cached
  + pandas                                       2.2.3  py310h5eaa309_1          conda-forge     Cached
  + cftime                                       1.6.4  py310hf462985_1          conda-forge     Cached
  + python-eccodes                              2.37.0  py310hf462985_0          conda-forge     Cached
  + zstandard                                   0.23.0  py310ha39cb0e_1          conda-forge     Cached
  + yarl                                        1.18.3  py310ha75aee5_0          conda-forge     Cached
  + matplotlib-base                              3.9.4  py310h68603db_0          conda-forge     Cached
  + scikit-learn                                 1.6.0  py310h27f47ee_0          conda-forge     Cached
  + fiona                                       1.10.1  py310h0aed7a2_3          conda-forge     Cached
  + netcdf4                                      1.7.2  nompi_py310h9f0ad05_101  conda-forge     Cached
  + matplotlib                                   3.9.4  py310hff52083_0          conda-forge     Cached
  + cartopy                                     0.24.0  py310h5eaa309_0          conda-forge     Cached
  + jsonpatch                                     1.33  pyhd8ed1ab_1             conda-forge     Cached
  + aiosignal                                    1.3.1  pyhd8ed1ab_1             conda-forge     Cached
  + referencing                                 0.35.1  pyhd8ed1ab_1             conda-forge     Cached
  + jupyter_client                               8.6.3  pyhd8ed1ab_1             conda-forge     Cached
  + jinja2                                       3.1.4  pyhd8ed1ab_1             conda-forge     Cached
  + dask-core                                2024.12.0  pyhd8ed1ab_1             conda-forge     Cached
  + magics-python                                1.5.8  pyhd8ed1ab_1             conda-forge     Cached
  + snuggs                                       1.4.7  pyhd8ed1ab_2             conda-forge     Cached
  + h5netcdf                                     1.4.1  pyhd8ed1ab_1             conda-forge     Cached
  + zarr                                        2.18.3  pyhd8ed1ab_1             conda-forge     Cached
  + xarray                                   2024.11.0  pyhd8ed1ab_0             conda-forge     Cached
  + geopandas-base                               1.0.1  pyha770c72_2             conda-forge     Cached
  + conda-package-streaming                     0.11.0  pyhd8ed1ab_0             conda-forge     Cached
  + urllib3                                      2.2.3  pyhd8ed1ab_1             conda-forge     Cached
  + nc-time-axis                                 1.4.1  pyhd8ed1ab_0             conda-forge     Cached
  + mapclassify                                  2.8.1  pyhd8ed1ab_1             conda-forge     Cached
  + jsonschema-specifications                2024.10.1  pyhd8ed1ab_1             conda-forge     Cached
  + ipykernel                                   6.29.5  pyh3099207_0             conda-forge     Cached
  + bokeh                                        3.6.2  pyhd8ed1ab_1             conda-forge     Cached
  + branca                                       0.7.2  pyhd8ed1ab_1             conda-forge     Cached
  + dask-expr                                   1.1.20  pyhd8ed1ab_1             conda-forge     Cached
  + cfgrib                                    0.9.14.1  pyhd8ed1ab_0             conda-forge     Cached
  + cf_xarray                                   0.10.0  pyhd8ed1ab_0             conda-forge     Cached
  + pint-xarray                                    0.4  pyhd8ed1ab_0             conda-forge     Cached
  + conda-package-handling                       2.4.0  pyha770c72_1             conda-forge     Cached
  + requests                                    2.32.3  pyhd8ed1ab_1             conda-forge     Cached
  + distributed                              2024.12.0  pyhd8ed1ab_1             conda-forge     Cached
  + jsonschema                                  4.23.0  pyhd8ed1ab_1             conda-forge     Cached
  + folium                                      0.19.0  pyhd8ed1ab_0             conda-forge     Cached
  + pooch                                        1.8.2  pyhd8ed1ab_1             conda-forge     Cached
  + python-swiftclient                           4.6.0  pyhd8ed1ab_0             conda-forge     Cached
  + dask                                     2024.12.0  pyhd8ed1ab_1             conda-forge     Cached
  + nbformat                                    5.10.4  pyhd8ed1ab_1             conda-forge     Cached
  + geopandas                                    1.0.1  pyhd8ed1ab_2             conda-forge     Cached
  + metpy                                        1.6.3  pyhd8ed1ab_0             conda-forge     Cached
  + nbclient                                    0.10.1  pyhd8ed1ab_0             conda-forge     Cached
  + nbconvert-core                              7.16.4  pyhff2d567_2             conda-forge     Cached
  + nbconvert-pandoc                            7.16.4  hd8ed1ab_2               conda-forge     Cached
  + nbconvert                                   7.16.4  hd8ed1ab_2               conda-forge     Cached
  + aiohttp                                      3.9.5  py310h2372a71_0          conda-forge     Cached
  + magics                                      4.15.5  hc87abea_0               conda-forge     Cached
  + rasterio                                     1.4.3  py310hbf83865_0          conda-forge     Cached
  + conda                                      24.11.0  py310hff52083_0          conda-forge     Cached
  + cdo                                          2.4.4  h0e6046d_2               conda-forge     Cached
  + metadata-inspector                      2024.10.15  pyhd8ed1ab_0             conda-forge     Cached
  + papermill                                    2.6.0  pyhd8ed1ab_0             conda-forge     Cached
  + regionmask                                  0.13.0  pyhd8ed1ab_0             conda-forge     Cached
  + conda-libmamba-solver                      24.11.1  pyhd8ed1ab_0             conda-forge     Cached
  + freva                                     2410.0.0  pyhd8ed1ab_1             conda-forge     Cached

  Summary:

  Install: 458 packages

  Total download: 0 B

─────────────────────────────────────────────────────────────────────────────────────────────────────────


eccodes-2.39.0-h8bb6dbc_1.conda extraction failed
error    libmamba Error when extracting package: filesystem error: cannot remove all: Directory not empty [/home/k/k202187/.conda/pkgs/eccodes-2.39.0-h8bb6dbc_1] [/home/k/k202187/.conda/pkgs/eccodes-2.39.0-h8bb6dbc_1/share/eccodes/definitions/bufr/tables/0/wmo]

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/home/b/b380001/freva/lib/python3.10/site-packages/conda/exceptions.py", line 1129, in __call__
        return func(*args, **kwargs)
      File "/home/b/b380001/freva/lib/python3.10/site-packages/conda_env/cli/main.py", line 80, in do_call
        exit_code = getattr(module, func_name)(args, parser)
      File "/home/b/b380001/freva/lib/python3.10/site-packages/conda/notices/core.py", line 72, in wrapper
        return_value = func(*args, **kwargs)
      File "/home/b/b380001/freva/lib/python3.10/site-packages/conda_env/cli/main_create.py", line 156, in execute
        result[installer_type] = installer.install(prefix, pkg_specs, args, env)
      File "/home/b/b380001/freva/lib/python3.10/site-packages/mamba/mamba_env.py", line 155, in mamba_install
        transaction.fetch_extract_packages()
    RuntimeError: filesystem error: cannot remove all: Directory not empty [/home/k/k202187/.conda/pkgs/eccodes-2.39.0-h8bb6dbc_1] [/home/k/k202187/.conda/pkgs/eccodes-2.39.0-h8bb6dbc_1/share/eccodes/definitions/bufr/tables/0/wmo/19]

`$ /home/b/b380001/freva/bin/mamba create --prefix ./plugin_env -f heat2urbanimpact-env.yml`

  environment variables:
                 CIO_TEST=<not set>
           CI_CONFIG_PATH=.gitlab-ci.yml
          CI_PROJECT_PATH=ch1187/plugins4freva/heat2urbanimpact
  CONDA_AUTO_UPDATE_CONDA=false
               CONDA_ROOT=/home/b/b380001/freva
           CURL_CA_BUNDLE=<not set>
                    FPATH=/usr/share/lmod/lmod/init/ksh_funcs
                  MANPATH=/usr/share/lmod/lmod/share/man::/opt/puppetlabs/puppet/share/man
               MODULEPATH=/work/ch1187/clint/Modules:/sw/spack-levante/spack/modules:/etc/module
                          files:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/m
                          odulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core
                     PATH=/home/b/b380001/freva/bin:/home/b/b380001/freva/envs/gnu-
                          r/bin:/sw/bin:/sw/spack-workplace/spack/bin:/usr/share/Modules/bin:/us
                          r/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin
       REQUESTS_CA_BUNDLE=<not set>
            SSL_CERT_FILE=<not set>

     active environment : None
       user config file : /home/k/k202187/.condarc
 populated config files : /home/k/k202187/.condarc
          conda version : 22.9.0
    conda-build version : not installed
         python version : 3.10.12.final.0
       virtual packages : __linux=4.18.0=0
                          __glibc=2.28=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /home/b/b380001/freva  (read only)
      conda av data dir : /home/b/b380001/freva/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /home/b/b380001/freva/pkgs
                          /home/k/k202187/.conda/pkgs
       envs directories : /home/k/k202187/.conda/envs
                          /home/b/b380001/freva/envs
               platform : linux-64
             user-agent : conda/22.9.0 requests/2.32.3 CPython/3.10.12 Linux/4.18.0-513.24.1.el8_9.x86_64 rhel/8.9 glibc/2.28
                UID:GID : 250640:1567
             netrc file : None
           offline mode : False


An unexpected error has occurred. Conda has prepared the above report.



Looking for: ['python=3.10', 'pip', 'freva', 'git-lfs', 'python-swiftclient', 'cdo', 'conda', 'ipykernel', 'cftime', 'nbconvert', 'mamba', 'cartopy', 'geopandas', 'matplotlib', 'xarray', 'pandas', 'pint', 'pint-xarray', 'papermill', 'metpy', 'nc-time-axis', 'cf_xarray', 'dask', 'regionmask', 'shapely', 'fiona', 'h5netcdf', 'netcdf4', 'zarr']


make: *** [Makefile:134: mamba-dep-install] Error 1
Error encountered during job: exit status 1
Error encountered during job: Error executing run_exec: exit status 1
section_end:1734333145:step_script
section_start:1734333145:upload_artifacts_on_failure
Uploading artifacts for failed job
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=400907 revision=374d34fd version=17.6.0
WARNING: build/prod_test: no matching files. Ensure that the artifact path is relative to the working directory (/scratch/hpc-ci/k202187/static/00540474/ch1187/plugins4freva/heat2urbanimpact) 
ERROR: No files to upload                          
section_end:1734333146:upload_artifacts_on_failure
section_start:1734333146:cleanup_file_variables
Cleaning up project directory and file based variables
section_end:1734333146:cleanup_file_variables
ERROR: Job failed: exit status 1