[0KRunning with gitlab-runner 17.6.0 (374d34fd)[0;m
[0K on slurm instance runner DijgUjkw-, system ID: s_3b9487865d15[0;m
section_start:1733921119:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver Jacamar CI 0.21.0...[0;m
section_end:1733921119:prepare_executor
[0Ksection_start:1733921119:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Targeting sbatch executor
Static builds directory in use, all jobs results kept. Please be aware of large disk space requirements when using this runner (minimum days: 1)
Running as g300050 UID: 23765 GID: 1303
Local time: 2024-12-11 13:45:19
Running on hpc-ci.dkrz.de via hpc-ci.dkrz.de...
section_end:1733921119:prepare_script
[0Ksection_start:1733921119:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 20...[0;m
Initialized empty Git repository in /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/.git/
[32;1mCreated fresh repository.[0;m
[32;1mChecking out e3902c16 as detached HEAD (ref is migration)...[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1733921123:get_sources
[0Ksection_start:1733921123:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for default-non_protected...[0;m
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=2975986 revision[0;m=374d34fd version[0;m=17.6.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1733921124:restore_cache
[0Ksection_start:1733921124:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 17.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/groups/gitlab-org/-/epics/6112[0;m
[32;1mSlurm job command: sbatch --wait --job-name=ci-536453_1733921124 --output=/scratch/hpc-ci/g300050/scripts/DijgUjkw-/002/ch1187/plugins4freva/heat2urbanimpact/536453/slurm-ci-536453.out --account=ch1187 --partition=compute --mem=0 /scratch/hpc-ci/g300050/scripts/DijgUjkw-/002/ch1187/plugins4freva/heat2urbanimpact/536453/build_script.bash[0;m
Submitted batch job 14201856
[32;1m$ module load clint regiklim-ces[0;m
[32;1m$ make mamba-dep-install[0;m
rm -fr build/
rm -fr dist/
rm -fr .eggs/
find . -name '*.egg-info' -exec rm -fr {} +
find . -name '*.egg' -exec rm -rf {} +
find . -name '*.pyc' -exec rm -f {} +
find . -name '*.pyo' -exec rm -f {} +
find . -name '*~' -exec rm -f {} +
find . -name '__pycache__' -exec rm -fr {} +
rm -fr .tox/
rm -f .coverage
rm -fr htmlcov/
rm -fr .pytest_cache
rm -rf venv
mamba env create --prefix ./plugin_env -f heat2urbanimpact-env.yml
error libmamba Could not open lockfile '/home/b/b380001/freva/pkgs/cache/cache.lock'
error libmamba Could not open lockfile '/home/b/b380001/freva/pkgs/cache/cache.lock'
Transaction
Prefix: /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/plugin_env
Updating specs:
- python=3.10
- pip
- freva
- git-lfs
- python-swiftclient
- cdo
- conda
- ipykernel
- cftime
- nbconvert
- mamba
- cartopy
- geopandas
- matplotlib
- xarray
- pandas
- pint
- pint-xarray
- papermill
- metpy
- nc-time-axis
- cf_xarray
- dask
- regionmask
- shapely
- fiona
- h5netcdf
- netcdf4
- zarr
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────────────────────────
+ git-lfs 3.6.0 h647637d_0 conda-forge Cached
+ pandoc 3.6 ha770c72_0 conda-forge Cached
+ _libgcc_mutex 0.1 conda_forge conda-forge Cached
+ python_abi 3.10 5_cp310 conda-forge Cached
+ ld_impl_linux-64 2.43 h712a8e2_2 conda-forge Cached
+ ca-certificates 2024.8.30 hbcca054_0 conda-forge Cached
+ libglvnd 1.7.0 ha4b6fd6_2 conda-forge Cached
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+ json-c 0.18 h6688a6e_0 conda-forge Cached
+ libgfortran5 14.2.0 hd5240d6_1 conda-forge Cached
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+ libstdcxx 14.2.0 hc0a3c3a_1 conda-forge Cached
+ libgcc-ng 14.2.0 h69a702a_1 conda-forge Cached
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+ libbrotlienc 1.1.0 hb9d3cd8_2 conda-forge Cached
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+ xz-tools 5.6.3 hb9d3cd8_1 conda-forge Cached
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+ liblzma-devel 5.6.3 hb9d3cd8_1 conda-forge Cached
+ libgfortran 14.2.0 h69a702a_1 conda-forge Cached
+ zlib 1.3.1 hb9d3cd8_2 conda-forge Cached
+ libsqlite 3.47.2 hee588c1_0 conda-forge Cached
+ libpng 1.6.44 hadc24fc_0 conda-forge Cached
+ gflags 2.2.2 h5888daf_1005 conda-forge Cached
+ opencl-headers 2024.10.24 h5888daf_0 conda-forge Cached
+ libabseil 20240722.0 cxx17_h5888daf_1 conda-forge Cached
+ snappy 1.2.1 h8bd8927_1 conda-forge Cached
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+ libstdcxx-ng 14.2.0 h4852527_1 conda-forge Cached
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+ libpciaccess 0.18 hd590300_0 conda-forge Cached
+ x264 1!164.3095 h166bdaf_2 conda-forge Cached
+ libopus 1.3.1 h7f98852_1 conda-forge Cached
+ lame 3.100 h166bdaf_1003 conda-forge Cached
+ lzo 2.10 hd590300_1001 conda-forge Cached
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+ libjpeg-turbo 3.0.0 hd590300_1 conda-forge Cached
+ tk 8.6.13 noxft_h4845f30_101 conda-forge Cached
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+ libffi 3.4.2 h7f98852_5 conda-forge Cached
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+ dav1d 1.2.1 hd590300_0 conda-forge Cached
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+ reproc-cpp 14.2.5.post0 h5888daf_0 conda-forge Cached
+ s2n 1.5.9 h0fd0ee4_0 conda-forge Cached
+ aws-c-cal 0.8.1 h0f28dba_2 conda-forge Cached
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+ libssh2 1.11.1 hf672d98_0 conda-forge Cached
+ brotli-bin 1.1.0 hb9d3cd8_2 conda-forge Cached
+ xorg-libx11 1.8.10 h4f16b4b_1 conda-forge Cached
+ xcb-util-wm 0.4.2 hb711507_0 conda-forge Cached
+ xcb-util-renderutil 0.3.10 hb711507_0 conda-forge Cached
+ xcb-util-keysyms 0.4.1 hb711507_0 conda-forge Cached
+ xcb-util 0.4.1 hb711507_2 conda-forge Cached
+ xz 5.6.3 hbcc6ac9_1 conda-forge Cached
+ libgfortran-ng 14.2.0 h69a702a_1 conda-forge Cached
+ libopenblas 0.3.28 pthreads_h94d23a6_1 conda-forge Cached
+ freetype 2.12.1 h267a509_2 conda-forge Cached
+ ocl-icd 2.3.2 hb9d3cd8_2 conda-forge Cached
+ libre2-11 2024.07.02 hbbce691_1 conda-forge Cached
+ libprotobuf 5.28.2 h5b01275_0 conda-forge Cached
+ libcrc32c 1.1.2 h9c3ff4c_0 conda-forge Cached
+ glog 0.7.1 hbabe93e_0 conda-forge Cached
+ pugixml 1.14 h59595ed_0 conda-forge Cached
+ gmp 6.3.0 hac33072_2 conda-forge Cached
+ x265 3.5 h924138e_3 conda-forge Cached
+ graphite2 1.3.13 h59595ed_1003 conda-forge Cached
+ libde265 1.0.15 h00ab1b0_0 conda-forge Cached
+ uriparser 0.9.8 hac33072_0 conda-forge Cached
+ nlohmann_json 3.11.3 he02047a_1 conda-forge Cached
+ double-conversion 3.3.0 h59595ed_0 conda-forge Cached
+ icu 75.1 he02047a_0 conda-forge Cached
+ qhull 2020.2 h434a139_5 conda-forge Cached
+ lz4-c 1.9.4 hcb278e6_0 conda-forge Cached
+ libaec 1.1.3 h59595ed_0 conda-forge Cached
+ lerc 4.0.0 h27087fc_0 conda-forge Cached
+ mysql-common 8.3.0 h70512c7_5 conda-forge Cached
+ libvpx 1.14.1 hac33072_0 conda-forge Cached
+ aom 3.9.1 hac33072_0 conda-forge Cached
+ yaml-cpp 0.8.0 h59595ed_0 conda-forge Cached
+ simdjson 3.10.1 h84d6215_0 conda-forge Cached
+ libsolv 0.7.30 h3509ff9_0 conda-forge Cached
+ fmt 11.0.2 h434a139_0 conda-forge Cached
+ cpp-expected 1.1.0 hf52228f_0 conda-forge Cached
+ zstd 1.5.6 ha6fb4c9_0 conda-forge Cached
+ librttopo 1.1.0 h97f6797_17 conda-forge Cached
+ libnghttp2 1.64.0 h161d5f1_0 conda-forge Cached
+ libdrm 2.4.124 hb9d3cd8_0 conda-forge Cached
+ hdf4 4.2.15 h2a13503_7 conda-forge Cached
+ perl 5.32.1 7_hd590300_perl5 conda-forge Cached
+ wayland 1.23.1 h3e06ad9_0 conda-forge Cached
+ pcre2 10.44 hba22ea6_2 conda-forge Cached
+ libzip 1.11.2 h6991a6a_0 conda-forge Cached
+ libedit 3.1.20191231 he28a2e2_2 conda-forge Cached
+ readline 8.2 h8228510_1 conda-forge Cached
+ xorg-libsm 1.2.4 he73a12e_1 conda-forge Cached
+ udunits2 2.2.28 h40f5838_3 conda-forge Cached
+ aws-c-io 0.15.3 hfd54f12_3 conda-forge Cached
+ libthrift 0.21.0 h0e7cc3e_0 conda-forge Cached
+ brotli 1.1.0 hb9d3cd8_2 conda-forge Cached
+ libglx 1.7.0 ha4b6fd6_2 conda-forge Cached
+ xorg-libxrender 0.9.11 hb9d3cd8_2 conda-forge Cached
+ xorg-libxfixes 6.0.1 hb9d3cd8_0 conda-forge Cached
+ xorg-libxext 1.3.6 hb9d3cd8_0 conda-forge Cached
+ xkeyboard-config 2.43 hb9d3cd8_0 conda-forge Cached
+ xcb-util-image 0.4.0 hb711507_2 conda-forge Cached
+ fftw 3.3.10 nompi_hf1063bd_110 conda-forge Cached
+ libblas 3.9.0 25_linux64_openblas conda-forge Cached
+ fontconfig 2.15.0 h7e30c49_1 conda-forge Cached
+ re2 2024.07.02 h77b4e00_1 conda-forge Cached
+ libkml 1.3.0 hf539b9f_1021 conda-forge Cached
+ xerces-c 3.2.5 h988505b_2 conda-forge Cached
+ libxml2 2.13.5 h8d12d68_1 conda-forge Cached
+ libavif16 1.1.1 h1909e37_2 conda-forge Cached
+ spdlog 1.14.1 hed91bc2_1 conda-forge Cached
+ minizip 4.0.7 h401b404_0 conda-forge Cached
+ libtiff 4.7.0 hc4654cb_2 conda-forge Cached
+ blosc 1.21.6 hef167b5_0 conda-forge Cached
+ mysql-libs 8.3.0 ha479ceb_5 conda-forge Cached
+ libglib 2.82.2 h2ff4ddf_0 conda-forge Cached
+ mysql-client 8.3.0 hb154bff_5 conda-forge Cached
+ krb5 1.21.3 h659f571_0 conda-forge Cached
+ sqlite 3.47.2 h9eae976_0 conda-forge Cached
+ aws-c-event-stream 0.5.0 hf811eff_10 conda-forge Cached
+ aws-c-http 0.9.2 hce7dc5d_3 conda-forge Cached
+ libgl 1.7.0 ha4b6fd6_2 conda-forge Cached
+ xorg-libxxf86vm 1.1.5 hb9d3cd8_4 conda-forge Cached
+ xorg-libxi 1.8.2 hb9d3cd8_0 conda-forge Cached
+ xorg-libxdamage 1.1.6 hb9d3cd8_0 conda-forge Cached
+ xcb-util-cursor 0.1.5 hb9d3cd8_0 conda-forge Cached
+ libcblas 3.9.0 25_linux64_openblas conda-forge Cached
+ liblapack 3.9.0 25_linux64_openblas conda-forge Cached
+ libgrpc 1.67.1 hc2c308b_0 conda-forge Cached
+ libhwloc 2.11.2 default_h0d58e46_1001 conda-forge Cached
+ libllvm18 18.1.8 h8b73ec9_2 conda-forge Cached
+ libllvm19 19.1.5 ha7bfdaf_0 conda-forge Cached
+ libxkbcommon 1.7.0 h2c5496b_1 conda-forge Cached
+ libxslt 1.1.39 h76b75d6_0 conda-forge Cached
+ libarchive 3.7.7 hadbb8c3_0 conda-forge Cached
+ libheif 1.18.2 gpl_hffcb242_100 conda-forge Cached
+ freexl 2.0.0 h743c826_0 conda-forge Cached
+ openjpeg 2.5.3 h5fbd93e_0 conda-forge Cached
+ lcms2 2.16 hb7c19ff_0 conda-forge Cached
+ dbus 1.13.6 h5008d03_3 conda-forge Cached
+ gdk-pixbuf 2.42.12 hb9ae30d_0 conda-forge Cached
+ libpq 16.6 h035377e_1 conda-forge Cached
+ libcups 2.3.3 h4637d8d_4 conda-forge Cached
+ zeromq 4.3.5 h3b0a872_7 conda-forge Cached
+ libcurl 8.10.1 hbbe4b11_0 conda-forge Cached
+ aws-c-auth 0.8.0 h8c8080f_14 conda-forge Cached
+ aws-c-mqtt 0.11.0 ha3c2ba9_11 conda-forge Cached
+ freeglut 3.2.2 ha6d2627_3 conda-forge Cached
+ libglu 9.0.3 h03adeef_0 conda-forge Cached
+ tbb 2022.0.0 hceb3a55_0 conda-forge Cached
+ libclang-cpp18.1 18.1.8 default_hf981a13_5 conda-forge Cached
+ libclang13 19.1.5 default_h9c6a7e4_0 conda-forge Cached
+ libgoogle-cloud 2.31.0 h804f50b_0 conda-forge Cached
+ azure-core-cpp 1.14.0 h5cfcd09_0 conda-forge Cached
+ hdf5 1.14.3 nompi_h2d575fe_108 conda-forge Cached
+ git 2.47.1 pl5321h59d505e_0 conda-forge Cached
+ libmamba 2.0.4 hf72d635_0 conda-forge Cached
+ proj 9.5.1 h0054346_0 conda-forge Cached
+ aws-c-s3 0.7.5 h55e9418_4 conda-forge Cached
+ jasper 4.2.4 h536e39c_0 conda-forge Cached
+ libopenvino 2024.4.0 hac27bb2_2 conda-forge Cached
+ libgoogle-cloud-storage 2.31.0 h0121fbd_0 conda-forge Cached
+ azure-storage-common-cpp 12.8.0 h736e048_1 conda-forge Cached
+ azure-identity-cpp 1.10.0 h113e628_0 conda-forge Cached
+ libnetcdf 4.9.2 nompi_h00e09a9_116 conda-forge Cached
+ mamba 2.0.4 hfdd0a45_0 conda-forge Cached
+ libspatialite 5.1.0 h1b4f908_11 conda-forge Cached
+ geotiff 1.7.3 h77b800c_3 conda-forge Cached
+ aws-crt-cpp 0.29.7 hed26007_5 conda-forge Cached
+ libopenvino-auto-batch-plugin 2024.4.0 h4d9b6c2_2 conda-forge Cached
+ libopenvino-auto-plugin 2024.4.0 h4d9b6c2_2 conda-forge Cached
+ libopenvino-hetero-plugin 2024.4.0 h3f63f65_2 conda-forge Cached
+ libopenvino-intel-cpu-plugin 2024.4.0 hac27bb2_2 conda-forge Cached
+ libopenvino-intel-gpu-plugin 2024.4.0 hac27bb2_2 conda-forge Cached
+ libopenvino-intel-npu-plugin 2024.4.0 hac27bb2_2 conda-forge Cached
+ libopenvino-ir-frontend 2024.4.0 h3f63f65_2 conda-forge Cached
+ libopenvino-onnx-frontend 2024.4.0 h5c8f2c3_2 conda-forge Cached
+ libopenvino-paddle-frontend 2024.4.0 h5c8f2c3_2 conda-forge Cached
+ libopenvino-pytorch-frontend 2024.4.0 h5888daf_2 conda-forge Cached
+ libopenvino-tensorflow-frontend 2024.4.0 h6481b9d_2 conda-forge Cached
+ libopenvino-tensorflow-lite-frontend 2024.4.0 h5888daf_2 conda-forge Cached
+ azure-storage-blobs-cpp 12.13.0 h3cf044e_1 conda-forge Cached
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+ libgdal-core 3.10.0 h7250d82_6 conda-forge Cached
+ aws-sdk-cpp 1.11.458 h571fd1c_3 conda-forge Cached
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+ font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge Cached
+ font-ttf-ubuntu 0.83 h77eed37_3 conda-forge Cached
+ tzdata 2024b hc8b5060_0 conda-forge Cached
+ pybind11-abi 4 hd8ed1ab_3 conda-forge Cached
+ wayland-protocols 1.37 hd8ed1ab_0 conda-forge Cached
+ fonts-conda-forge 1 0 conda-forge Cached
+ fonts-conda-ecosystem 1 0 conda-forge Cached
+ orc 2.0.3 he039a57_0 conda-forge Cached
+ python 3.10.16 he725a3c_1_cpython conda-forge Cached
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+ cairo 1.18.2 h3394656_1 conda-forge Cached
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+ harfbuzz 9.0.0 hda332d3_1 conda-forge Cached
+ libarrow-acero 18.1.0 h8bbc2ab_4_cpu conda-forge Cached
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+ qt6-main 6.7.2 hb12f9c5_4 conda-forge Cached
+ libarrow-dataset 18.1.0 h8bbc2ab_4_cpu conda-forge Cached
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+ libarrow-substrait 18.1.0 had74209_4_cpu conda-forge Cached
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+ wheel 0.45.1 pyhd8ed1ab_1 conda-forge Cached
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+ executing 2.1.0 pyhd8ed1ab_1 conda-forge Cached
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+ conda-package-streaming 0.11.0 pyhd8ed1ab_0 conda-forge Cached
+ urllib3 2.2.3 pyhd8ed1ab_1 conda-forge Cached
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+ metadata-inspector 2024.10.15 pyhd8ed1ab_0 conda-forge Cached
+ papermill 2.6.0 pyhd8ed1ab_0 conda-forge Cached
+ regionmask 0.13.0 pyhd8ed1ab_0 conda-forge Cached
+ conda-libmamba-solver 24.11.1 pyhd8ed1ab_0 conda-forge Cached
+ freva 2410.0.0 pyhd8ed1ab_1 conda-forge Cached
Summary:
Install: 458 packages
Total download: 58kB
─────────────────────────────────────────────────────────────────────────────────────────────────────────
Looking for: ['python=3.10', 'pip', 'freva', 'git-lfs', 'python-swiftclient', 'cdo', 'conda', 'ipykernel', 'cftime', 'nbconvert', 'mamba', 'cartopy', 'geopandas', 'matplotlib', 'xarray', 'pandas', 'pint', 'pint-xarray', 'papermill', 'metpy', 'nc-time-axis', 'cf_xarray', 'dask', 'regionmask', 'shapely', 'fiona', 'h5netcdf', 'netcdf4', 'zarr']
Preparing transaction: ...working...
done
Verifying transaction: ...working...
done
Executing transaction: ...working...
done
Installing pip dependencies: ...working...
Ran pip subprocess with arguments:
['/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/plugin_env/bin/python', '-m', 'pip', 'install', '-U', '-r', '/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt']
Pip subprocess output:
Collecting git+https://gitlab.dkrz.de/ch1187/plugins4freva/climpact.git (from -r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4))
Cloning https://gitlab.dkrz.de/ch1187/plugins4freva/climpact.git to /tmp/pip-req-build-k8rqzlve
Resolved https://gitlab.dkrz.de/ch1187/plugins4freva/climpact.git to commit f8f2f067bef854d44343ca55797af9a46df70b31
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Processing /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: setuptools in ./plugin_env/lib/python3.10/site-packages (from -r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 1)) (75.6.0)
Requirement already satisfied: wheel in ./plugin_env/lib/python3.10/site-packages (from -r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 2)) (0.45.1)
Requirement already satisfied: asciitree in ./plugin_env/lib/python3.10/site-packages (from -r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 3)) (0.3.3)
Requirement already satisfied: appdirs in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (1.4.4)
Requirement already satisfied: geopandas in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (1.0.1)
Requirement already satisfied: regionmask in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (0.13.0)
Requirement already satisfied: xarray in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (2024.11.0)
Requirement already satisfied: cf_xarray in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (0.10.0)
Requirement already satisfied: cftime in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (1.6.4)
Requirement already satisfied: cartopy in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (0.24.0)
Requirement already satisfied: nc-time-axis in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (1.4.1)
Requirement already satisfied: h5netcdf in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (1.4.1)
Requirement already satisfied: pint in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (0.24.4)
Requirement already satisfied: pint-xarray in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (0.4)
Requirement already satisfied: python-swiftclient in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (4.6.0)
Collecting swiftspec (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4))
Using cached swiftspec-0.0.4-py3-none-any.whl.metadata (3.1 kB)
Requirement already satisfied: zarr in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (2.18.3)
Requirement already satisfied: tqdm in ./plugin_env/lib/python3.10/site-packages (from climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (4.67.1)
Requirement already satisfied: toml in ./plugin_env/lib/python3.10/site-packages (from heat2urbanimpact==0+untagged.21.ge3902c1->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 5)) (0.10.2)
Requirement already satisfied: numpy in ./plugin_env/lib/python3.10/site-packages (from heat2urbanimpact==0+untagged.21.ge3902c1->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 5)) (2.2.0)
Requirement already satisfied: matplotlib>=3.6 in ./plugin_env/lib/python3.10/site-packages (from cartopy->climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (3.9.3)
Requirement already satisfied: shapely>=1.8 in ./plugin_env/lib/python3.10/site-packages (from cartopy->climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (2.0.6)
Requirement already satisfied: packaging>=21 in ./plugin_env/lib/python3.10/site-packages (from cartopy->climpact==0+untagged.142.gf8f2f06->-r /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/condaenv.agtwpyc0.requirements.txt (line 4)) (24.2)
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Using cached swiftspec-0.0.4-py3-none-any.whl (7.4 kB)
Building wheels for collected packages: climpact, heat2urbanimpact
Building wheel for climpact (pyproject.toml): started
Building wheel for climpact (pyproject.toml): finished with status 'done'
Created wheel for climpact: filename=climpact-0+untagged.142.gf8f2f06-py3-none-any.whl size=43482 sha256=3b4d61f420a087c8a05e1fb90d3fef2068e9e3ed1f5137ca87c8c41697347f1a
Stored in directory: /tmp/pip-ephem-wheel-cache-b61aotct/wheels/01/e4/44/0367ab5d7d4e3b588dbf7aaab707c892002e05c172991f0fdf
Building wheel for heat2urbanimpact (pyproject.toml): started
Building wheel for heat2urbanimpact (pyproject.toml): finished with status 'done'
Created wheel for heat2urbanimpact: filename=heat2urbanimpact-0+untagged.21.ge3902c1-py3-none-any.whl size=23035 sha256=226cedee79d6916a9be7e848d4859f9f591dc028efbcf01722577a1e444b299f
Stored in directory: /tmp/pip-ephem-wheel-cache-b61aotct/wheels/ad/0f/c0/e1480acbea53d0b6d773b0e11f726e8bf5c2252bef60dfa711
Successfully built climpact heat2urbanimpact
Installing collected packages: heat2urbanimpact, swiftspec, climpact
Successfully installed climpact-0+untagged.142.gf8f2f06 heat2urbanimpact-0+untagged.21.ge3902c1 swiftspec-0.0.4
done
#
# To activate this environment, use
#
# $ conda activate /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/plugin_env
#
# To deactivate an active environment, use
#
# $ conda deactivate
Retrieving notices: ...working... done
echo /home/b/b380001/freva/bin:/home/b/b380001/freva/envs/gnu-r/bin:/sw/bin:/sw/spack-workplace/spack/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin
/home/b/b380001/freva/bin:/home/b/b380001/freva/envs/gnu-r/bin:/sw/bin:/sw/spack-workplace/spack/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin
[32;1m$ export EVALUATION_SYSTEM_PLUGINS=$CI_PROJECT_DIR,wrapper[0;m
[32;1m$ freva-plugin --list[0;m
┏━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓
┃ Tool ┃ Description ┃
┡━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩
│ Animator │ Animate data on lon/lat grids │
│ Blocking_2D │ Calculates various 2D-Blocking Indices of the Northern │
│ │ Hemisphere │
│ ClimDexCalc2 │ Calculates the ET-SCI climate extreme indices (former │
│ │ ClimpactSCI) │
│ Climpact │ Process climate model data for input of impact model │
│ CWT │ Calculate Circulation Weather Type by mean sea level │
│ │ pressure. │
│ DiffPlotter │ Plots difference between two NetCDF files │
│ Heat2UrbanImpact │ Preprocessed time series of heat periods from RCM data │
│ │ for urban impact models. │
│ HWMID │ Heat wave evaluation using Heat Wave Magnitude Index │
│ │ daily │
│ IDF │ Estimate and plot Intensity-Duration-Frequency │
│ │ relationships │
│ PERCENTILE │ Calculates multiple percentiles using CDO │
│ PreProc │ Spatio-temporal Pre-Processing of Data, including │
│ │ database linking. │
│ PSI │ Calculate Precipitation Severity Index. │
│ WTRACK │ Wind tracking algorithm. │
│ ZYKPAK │ Cyclone tracking and identification package - applied to │
│ │ sea- level pressure -> psl │
└──────────────────┴───────────────────────────────────────────────────────────┘
[32;1m$ freva-plugin heat2urbanimpact region=Hamburg experiment=ssp245-gwl2k models=ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6-5-rc-nukleus-x2yn2-v1 output_units=true output_file_type=nc mask_type=none mask_method=centres plot_map=true pre_process_function=pre_proc caption="Heat2UrbanImpact production test from CI piepline https://gitlab.dkrz.de/ch1187/plugins4freva/heat2urbanimpact/-/jobs/$CI_JOB_ID" -vvv[0;m
[14:03:34] DEBUG freva - DEBUG - Loading 'animator'
DEBUG freva - DEBUG - Loading 'climpact'
DEBUG freva - DEBUG - Loading 'climdexcalc2'
DEBUG freva - DEBUG - Loading 'blocking'
DEBUG freva - DEBUG - Loading 'diffplotter'
DEBUG freva - DEBUG - Loading 'idf'
DEBUG freva - DEBUG - Loading 'percentile'
DEBUG freva - DEBUG - Loading 'preproc'
DEBUG freva - DEBUG - Loading 'psi'
DEBUG freva - DEBUG - Loading 'wtrack'
DEBUG freva - DEBUG - Loading 'zykpak'
DEBUG freva - DEBUG - Loading 'cwt'
DEBUG freva - DEBUG - Loading 'hwmid'
DEBUG freva - DEBUG - Running heat2urbanimpact with configuration:
defaultdict(<class 'list'>, {'region': 'Hamburg',
'experiment': 'ssp245-gwl2k', 'models':
['ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6-5-rc
-nukleus-x2yn2-v1'], 'output_units': 'true',
'output_file_type': 'nc', 'mask_type': 'none',
'mask_method': 'centres', 'plot_map': True,
'pre_process_function': 'pre_proc', 'length_of_event': 3,
'event': '95th percentile', 'months_of_event': 'July',
'debug': True})
DEBUG freva - DEBUG - Running heat2urbanimpact with {'shape_file':
None, 'region': 'Hamburg', 'split_by': None, 'experiment':
'ssp245-gwl2k', 'models':
['ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6-5-rc
-nukleus-x2yn2-v1'], 'event': '95th percentile',
'length_of_event': 3, 'months_of_event': 'July',
'impact_model': None, 'start': None, 'end': None,
'output_units': 'true', 'output_file_type': 'nc',
'mask_type': 'none', 'mask_method': 'centres', 'plot_map':
True, 'pre_process_module': None, 'pre_process_function':
'pre_proc', 'extra_scheduler_options': '', 'debug': True}
DEBUG freva - DEBUG - Searching dictionary: {'time': '',
'variable': ['tas', 'ta300', 'ta500', 'ta700', 'ta950'],
'experiment': 'ssp245-gwl2k', 'model':
'ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6-5-rc-
nukleus-x2yn2-v1', 'time_frequency': '1hr', 'product':
'ceu-3', 'project': 'nukleus', 'time_select': 'Intersects'}
DEBUG freva - DEBUG - {'variable': ['tas', 'ta300', 'ta500',
'ta700', 'ta950'], 'experiment': 'ssp245-gwl2k', 'model':
'ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6-5-rc-
nukleus-x2yn2-v1', 'time_frequency': '1hr', 'product':
'ceu-3', 'project': 'nukleus', 'facet.limit': -1, 'q':
'*:*'}
DEBUG freva - DEBUG - [('fq', 'variable:tas OR variable:ta300 OR
variable:ta500 OR variable:ta700 OR variable:ta950'), ('fq',
'experiment:ssp245-gwl2k'), ('fq',
'model:ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6
-5-rc-nukleus-x2yn2-v1'), ('fq', 'time_frequency:1hr'),
('fq', 'product:ceu-3'), ('fq', 'project:nukleus'),
('facet.limit', -1), ('q', '*:*')]
DEBUG freva - DEBUG -
http://regiklim-solr.dkrz.de:8983/solr/latest/select?facet=t
rue&rows=0&fq=variable%3Atas+OR+variable%3Ata300+OR+variable
%3Ata500+OR+variable%3Ata700+OR+variable%3Ata950&fq=experime
nt%3Assp245-gwl2k&fq=model%3Aec-earth-consortium-ec-earth3-v
eg-clmcom-btu-icon-2-6-5-rc-nukleus-x2yn2-v1&fq=time_frequen
cy%3A1hr&fq=product%3Aceu-3&fq=project%3Anukleus&facet.limit
=-1&q=%2A%3A%2A&facet=true&facet.sort=index&facet.mincount=1
&facet.field=ensemble&wt=json
DEBUG freva - DEBUG - {'variable': ['tas', 'ta300', 'ta500',
'ta700', 'ta950'], 'experiment': 'ssp245-gwl2k', 'model':
'ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6-5-rc-
nukleus-x2yn2-v1', 'time_frequency': '1hr', 'product':
'ceu-3', 'project': 'nukleus', 'ensemble': 'r1i1p1f1', 'q':
'*:*', 'fl': 'file', 'sort': 'file desc'}
DEBUG freva - DEBUG - [('fq', 'variable:tas OR variable:ta300 OR
variable:ta500 OR variable:ta700 OR variable:ta950'), ('fq',
'experiment:ssp245-gwl2k'), ('fq',
'model:ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6
-5-rc-nukleus-x2yn2-v1'), ('fq', 'time_frequency:1hr'),
('fq', 'product:ceu-3'), ('fq', 'project:nukleus'), ('fq',
'ensemble:r1i1p1f1'), ('q', '*:*'), ('fl', 'file'), ('sort',
'file desc')]
DEBUG freva - DEBUG - {'variable': ['tas', 'ta300', 'ta500',
'ta700', 'ta950'], 'experiment': 'ssp245-gwl2k', 'model':
'ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6-5-rc-
nukleus-x2yn2-v1', 'time_frequency': '1hr', 'product':
'ceu-3', 'project': 'nukleus', 'ensemble': 'r1i1p1f1', 'q':
'*:*', 'fl': 'file', 'sort': 'file desc'}
DEBUG freva - DEBUG - [('fq', 'variable:tas OR variable:ta300 OR
variable:ta500 OR variable:ta700 OR variable:ta950'), ('fq',
'experiment:ssp245-gwl2k'), ('fq',
'model:ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6
-5-rc-nukleus-x2yn2-v1'), ('fq', 'time_frequency:1hr'),
('fq', 'product:ceu-3'), ('fq', 'project:nukleus'), ('fq',
'ensemble:r1i1p1f1'), ('q', '*:*'), ('fl', 'file'), ('sort',
'file desc')]
DEBUG freva - DEBUG -
http://regiklim-solr.dkrz.de:8983/solr/latest/select?facet=t
rue&rows=0&fq=variable%3Atas+OR+variable%3Ata300+OR+variable
%3Ata500+OR+variable%3Ata700+OR+variable%3Ata950&fq=experime
nt%3Assp245-gwl2k&fq=model%3Aec-earth-consortium-ec-earth3-v
eg-clmcom-btu-icon-2-6-5-rc-nukleus-x2yn2-v1&fq=time_frequen
cy%3A1hr&fq=product%3Aceu-3&fq=project%3Anukleus&fq=ensemble
%3Ar1i1p1f1&q=%2A%3A%2A&fl=file&sort=file+desc&wt=json
DEBUG freva - DEBUG -
http://regiklim-solr.dkrz.de:8983/solr/latest/select?start=0
&rows=150&fq=variable%3Atas+OR+variable%3Ata300+OR+variable%
3Ata500+OR+variable%3Ata700+OR+variable%3Ata950&fq=experimen
t%3Assp245-gwl2k&fq=model%3Aec-earth-consortium-ec-earth3-ve
g-clmcom-btu-icon-2-6-5-rc-nukleus-x2yn2-v1&fq=time_frequenc
y%3A1hr&fq=product%3Aceu-3&fq=project%3Anukleus&fq=ensemble%
3Ar1i1p1f1&q=%2A%3A%2A&fl=file&sort=file+desc&wt=json
DEBUG freva - DEBUG - Loading configuration file from:
/work/ch1187/freva-regiklim/freva/evaluation_system.conf
[14:03:35] DEBUG freva - DEBUG - Configuration loaded from
/work/ch1187/freva-regiklim/freva/evaluation_system.conf
DEBUG freva - DEBUG - Calling:
/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva
/heat2urbanimpact/plugin_env/bin/python -B
/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva
/heat2urbanimpact/builder.py /tmp/tmpe1im5emg.json
ERROR 1: PROJ: proj_create_from_database: Open of /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/plugin_env/share/proj failed
traitlets-INFO - Removing existing kernelspec in /home/g/g300050/.local/share/jupyter/kernels/heat2urbanimpact
traitlets-INFO - Installed kernelspec heat2urbanimpact in /home/g/g300050/.local/share/jupyter/kernels/heat2urbanimpact
Heat2UrbanImpact-DEBUG - {'shape_file': '/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/assets/GER.shp', 'region': '129', 'split_by': '', 'experiment': 'ssp245-gwl2k', 'event': '95th percentile', 'length_of_event': 3, 'months_of_event': 'July', 'impact_model': '', 'start': '', 'end': '', 'output_file_type': 'nc', 'mask_method': 'centres', 'plot_map': True, 'pre_process_module': '', 'pre_process_function': 'pre_proc', 'debug': True, 'project': 'nukleus', 'product': 'ceu-3', 'time_frequency': '1hr', 'variable': ['tas', 'ta300', 'ta500', 'ta700', 'ta950'], 'output_dir': PosixPath('/work/ch1187/regiklim-work/g300050/regiklim-ces/output/heat2urbanimpact/6255'), 'output_units': {'true': ''}, 'mask': '', 'account': 'ch1187', 'files': {'ec-earth-consortium-ec-earth3-veg-clmcom-btu-icon-2-6-5-rc-nukleus-x2yn2-v1': {'r1i1p1f1': 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'/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_203601010000-203612312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_203701010000-203712312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_203801010000-203812312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_203901010000-203912312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_204001010000-204012312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_204101010000-204112312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_204201010000-204212312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_204301010000-204312312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_204401010000-204412312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_204501010000-204512312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_204601010000-204612312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_204701010000-204712312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_204801010000-204812312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_204901010000-204912312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_205001010000-205012312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_205101010000-205112312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_205201010000-205212312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_205301010000-205312312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_205401010000-205412312300.nc', '/work/ch1187/freva-regiklim/data/model/regional/nukleus-btu/NUKLEUS/output/CEU-3/CLMcom-BTU/EC-Earth-Consortium-EC-Earth3-Veg/ssp245-GWL2K/r1i1p1f1/CLMcom-BTU-ICON-2-6-5-rc/nukleus-x2yn2-v1/1hr/tas/v20240201/tas_CEU-3_EC-Earth-Consortium-EC-Earth3-Veg_ssp245-GWL2K_r1i1p1f1_CLMcom-BTU-ICON-2-6-5-rc_nukleus-x2yn2-v1_1hr_205501010000-205512312300.nc']}}, 'kernel_name': 'heat2urbanimpact', 'abort_on_error': True}
Heat2UrbanImpact-INFO - Reading netcdf files
pint.util-WARNING - Redefining 'degrees_north' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degrees_N' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degreesN' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degree_north' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degree_N' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degreeN' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degrees_east' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degrees_E' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degreesE' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degree_east' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degree_E' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'degreeE' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
pint.util-WARNING - Redefining 'gpm' (<class 'pint.delegates.txt_defparser.plain.UnitDefinition'>)
Traceback (most recent call last):
File "/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/builder.py", line 489, in <module>
cfg = apply(parse_config(sys.argv[1:]), td)
File "/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/builder.py", line 403, in apply
results.append(proc_func())
File "/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/builder.py", line 192, in process_run
if rd.dataset is None:
File "/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/plugin_env/lib/python3.10/functools.py", line 981, in __get__
val = self.func(instance)
File "/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/plugin_env/lib/python3.10/site-packages/climpact/run_directory.py", line 937, in dataset
if self._dataset is None:
File "/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/plugin_env/lib/python3.10/functools.py", line 981, in __get__
val = self.func(instance)
File "/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/plugin_env/lib/python3.10/site-packages/climpact/run_directory.py", line 920, in _dataset
mask = self.get_mask( # noqa: F841
File "/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4freva/heat2urbanimpact/plugin_env/lib/python3.10/site-packages/climpact/run_directory.py", line 93, in get_mask
mask = regionmask.mask_geopandas(
TypeError: mask_geopandas() got an unexpected keyword argument 'lat_name'
[14:04:25] ERROR freva - ERROR - An error occurred calling
['/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4fre
va/heat2urbanimpact/plugin_env/bin/python', '-B',
'/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4frev
a/heat2urbanimpact/builder.py', '/tmp/tmpe1im5emg.json']
ERROR freva - ERROR - Check also
/work/ch1187/regiklim-work/share/slurm_output/heat2urbanimpa
ct/Heat2UrbanImpact-1355348.local
[14:04:26] ERROR freva - ERROR - Command
'['/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4fr
eva/heat2urbanimpact/plugin_env/bin/python', '-B',
'/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4frev
a/heat2urbanimpact/builder.py', '/tmp/tmpe1im5emg.json']'
returned non-zero exit status 1.
╭─────────── Traceback (most recent call last) ────────────╮
│ /home/b/b380001/freva/lib/python3.10/site-packages/freva │
│ /cli/utils.py:511 in standard_main │
│ │
│ 508 │ ) │
│ 509 │ args = cli.parse_args(argv or sys.argv[1:]) │
│ 510 │ try: │
│ ❱ 511 │ │ cli.run_cmd(args, **cli.kwargs) │
│ 512 │ except KeyboardInterrupt: │
│ 513 │ │ print("KeyboardInterrupt, exiting", file=s │
│ 514 │ │ sys.exit(130) │
│ │
│ /home/b/b380001/freva/lib/python3.10/site-packages/freva │
│ /cli/plugin.py:199 in run_cmd │
│ │
│ 196 │ │ │ │ print(freva.plugin_info(tool_name │
│ 197 │ │ │ else: │
│ 198 │ │ │ │ with _pipe(redirect_stdout=jsonify │
│ ❱ 199 │ │ │ │ │ plugin_run = freva.run_plugin( │
│ 200 │ │ │ │ value = int(plugin_run.status == " │
│ 201 │ │ except ( │
│ 202 │ │ │ PluginNotFoundError, │
│ │
│ /home/b/b380001/freva/lib/python3.10/site-packages/freva │
│ /utils.py:90 in wrapper │
│ │
│ 87 │ │ │ │ msg + wrong_config_msg[logger.is_c │
│ 88 │ │ │ ) from None │
│ 89 │ │ except BaseException as error: │
│ ❱ 90 │ │ │ exception_handler(error) │
│ 91 │ │
│ 92 │ return wrapper │
│ 93 │
│ │
│ /home/b/b380001/freva/lib/python3.10/site-packages/freva │
│ /utils.py:124 in exception_handler │
│ │
│ 121 │ │ logger.error(msg) │
│ 122 │ if logger.level > logging.DEBUG: │
│ 123 │ │ raise exception from None │
│ ❱ 124 │ raise exception │
│ 125 │
│ 126 │
│ 127 class PluginStatus: │
│ │
│ /home/b/b380001/freva/lib/python3.10/site-packages/freva │
│ /utils.py:82 in wrapper │
│ │
│ 79 │ │ │ ), │
│ 80 │ │ } │
│ 81 │ │ try: │
│ ❱ 82 │ │ │ return func(*args, **kwargs) │
│ 83 │ │ except (ImproperlyConfigured, OperationalE │
│ 84 │ │ │ # Wrap django error in a more informat │
│ 85 │ │ │ msg = "Your freva instance doesn't see │
│ │
│ /home/b/b380001/freva/lib/python3.10/site-packages/freva │
│ /_plugin.py:557 in run_plugin │
│ │
│ 554 │ │ │ │ " in previously active system.", │
│ 555 │ │ │ │ UserWarning, │
│ 556 │ │ │ ) │
│ ❱ 557 │ │ tool_id, result = pm.run_tool( │
│ 558 │ │ │ tool_name, │
│ 559 │ │ │ config_dict=tool_dict, │
│ 560 │ │ │ caption=caption, │
│ │
│ /home/b/b380001/freva/lib/python3.10/site-packages/evalu │
│ ation_system/api/plugin_manager.py:841 in run_tool │
│ │
│ 838 │ │ plugin_state.status = History.processStat │
│ 839 │ │ # we want that the rowid to be visible to │
│ 840 │ │ # TODO: not sure if this is really option │
│ ❱ 841 │ │ result: Optional[utils.metadict] = p._run │
│ 842 │ │ │ config_dict=complete_conf, │
│ 843 │ │ │ unique_output=unique_output, │
│ 844 │ │ │ out_file=out_file, │
│ │
│ /home/b/b380001/freva/lib/python3.10/site-packages/evalu │
│ ation_system/api/plugin.py:438 in _run_tool │
│ │
│ 435 │ │ │ config_dict.pop(key, "") │
│ 436 │ │ with self._set_environment(rowid, is_inte │
│ 437 │ │ │ try: │
│ ❱ 438 │ │ │ │ result = self.run_tool(config_dic │
│ 439 │ │ │ except NotImplementedError: │
│ 440 │ │ │ │ result = deprecated_method("Plugi │
│ "run_tool")(self.runTool)(config_dict=config_dict │
│ 441 │ │ │ return result │
│ │
│ /scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4f │
│ reva/heat2urbanimpact/wrapper.py:364 in run_tool │
│ │
│ 361 │ │ │ with open(tf.name, "w") as f: │
│ 362 │ │ │ │ json.dump(config_dict, f, indent=3 │
│ 363 │ │ │ cmd = "{} -B {} {}".format(python_env, │
│ ❱ 364 │ │ │ _ = self.call(cmd) │
│ 365 │ │ for path in ("dask-worker-space", "__pycac │
│ 366 │ │ │ rmpath = Path(config_dict["output_dir" │
│ 367 │ │ │ if rmpath.is_dir(): │
│ │
│ /home/b/b380001/freva/lib/python3.10/site-packages/evalu │
│ ation_system/api/plugin.py:1269 in call │
│ │
│ 1266 │ │ │ res = self._execute(cmd, check=check, │
│ 1267 │ │ except sub.CalledProcessError as cmd_erro │
│ 1268 │ │ │ with hide_exception(): │
│ ❱ 1269 │ │ │ │ raise cmd_error │
│ 1270 │ │ return res │
│ 1271 │ │
│ 1272 │ def _split_path(self, path: str) -> list[str] │
│ │
│ /home/b/b380001/freva/lib/python3.10/site-packages/evalu │
│ ation_system/api/plugin.py:1266 in call │
│ │
│ 1263 │ │ │ cmd = cmd_string │
│ 1264 │ │ log.debug("Calling: %s", " ".join(cmd)) │
│ 1265 │ │ try: │
│ ❱ 1266 │ │ │ res = self._execute(cmd, check=check, │
│ 1267 │ │ except sub.CalledProcessError as cmd_erro │
│ 1268 │ │ │ with hide_exception(): │
│ 1269 │ │ │ │ raise cmd_error │
│ │
│ /home/b/b380001/freva/lib/python3.10/site-packages/evalu │
│ ation_system/api/plugin.py:334 in _execute │
│ │
│ 331 │ │ │ if return_code and check: │
│ 332 │ │ │ │ log.error("An error occurred call │
│ 333 │ │ │ │ log.error("Check also %s", self.p │
│ ❱ 334 │ │ │ │ raise sub.CalledProcessError( │
│ 335 │ │ │ │ │ return_code, │
│ 336 │ │ │ │ │ cmd, │
│ 337 │ │ │ │ ) │
╰──────────────────────────────────────────────────────────╯
CalledProcessError: Command
'['/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4fr
eva/heat2urbanimpact/plugin_env/bin/python', '-B',
'/scratch/hpc-ci/g300050/static/00536453/ch1187/plugins4frev
a/heat2urbanimpact/builder.py', '/tmp/tmpe1im5emg.json']'
returned non-zero exit status 1.
[32;1m$ mkdir -p build/prod_test[0;m
[32;1m$ REGIKLIM_JOB_ID=$(ls -t /work/$ACCOUNT/regiklim-work/$GITLAB_USER_LOGIN/regiklim-ces/output/heat2urbanimpact/ | head -n 1)[0;m
[32;1m$ cd /work/$ACCOUNT/regiklim-work/$GITLAB_USER_LOGIN/regiklim-ces/output/heat2urbanimpact/$REGIKLIM_JOB_ID[0;m
[32;1m$ echo "<!DOCTYPE html><html><head>" >> index.html[0;m
[32;1m$ echo "<meta http-equiv=\"refresh\" content=\"0; url=https://www-regiklim.dkrz.de/history/$REGIKLIM_JOB_ID/results/\">" >> index.html[0;m
[32;1m$ echo "<title>Redirecting...</title>" >> index.html[0;m
[32;1m$ echo "</head><body>" >> index.html[0;m
[32;1m$ echo "<p>If you are not redirected, <a href=\"https://www-regiklim.dkrz.de/history/$REGIKLIM_JOB_ID/results/\">click here</a>.</p>" >> index.html[0;m
[32;1m$ echo "</body></html>" >> index.html[0;m
[32;1m$ ls -la[0;m
total 9
drwxr-sr-x 2 g300050 ch1187 4096 Dec 11 14:04 .
drwxr-sr-x 6 g300050 ch1187 4096 Dec 11 14:03 ..
-rw-r--r-- 1 g300050 ch1187 294 Dec 11 14:04 index.html
[32;1m$ cp -r * $CI_PROJECT_DIR/build/prod_test[0;m
[32;1mSlurm job ci-536453_1733921124 state: COMPLETED[0;m
section_end:1733922320:step_script
[0Ksection_start:1733922320:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache default-non_protected...[0;m
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=2979847 revision[0;m=374d34fd version[0;m=17.6.0
.cache/pip: found 107 matching artifact files and directories[0;m
No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally.[0;m
[32;1mCreated cache[0;m
section_end:1733922329:archive_cache
[0Ksection_start:1733922329:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=2979941 revision[0;m=374d34fd version[0;m=17.6.0
build/prod_test: found 2 matching artifact files and directories[0;m
Uploading artifacts as "archive" to coordinator... 201 Created[0;m id[0;m=536453 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1733922331:upload_artifacts_on_success
[0Ksection_start:1733922331:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1733922331:cleanup_file_variables
[0K[32;1mJob succeeded[0;m